Wall clock time and date at job start Mon Mar 30 2020 07:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 H 1.08996 * 108.98953 * 56.04722 * 3 2 1 5 5 C 1.54509 * 109.05831 * 297.08735 * 3 2 1 6 6 C 1.50455 * 108.85484 * 162.26299 * 5 3 2 7 7 C 1.54293 * 113.03382 * 92.15540 * 6 5 3 8 8 C 1.54069 * 112.28784 * 318.30295 * 7 6 5 9 9 N 1.44271 * 111.98558 * 318.91765 * 8 7 6 10 10 C 1.46903 * 111.00195 * 219.31149 * 9 8 7 11 11 C 1.53003 * 109.46656 * 301.03427 * 10 9 8 12 12 O 1.42894 * 109.47215 * 67.03090 * 11 10 9 13 13 C 1.42906 * 113.99817 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47011 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00047 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99796 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99902 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46912 * 90.00330 * 18 16 14 20 20 H 1.48502 * 109.47240 * 210.00136 * 18 16 14 21 21 H 1.48496 * 109.47186 * 330.00288 * 18 16 14 22 22 C 1.45869 * 109.05261 * 175.00285 * 3 2 1 23 23 H 1.08998 * 109.47363 * 59.99706 * 1 2 3 24 24 H 1.08998 * 109.46618 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46781 * 299.99835 * 1 2 3 26 26 H 1.09006 * 109.46882 * 240.00438 * 2 1 3 27 27 H 1.08998 * 109.47363 * 120.00293 * 2 1 3 28 28 H 1.09003 * 109.57530 * 282.07809 * 5 3 2 29 29 H 1.09006 * 109.56920 * 42.32751 * 5 3 2 30 30 H 1.08992 * 108.77325 * 213.07305 * 6 5 3 31 31 H 1.08997 * 108.76992 * 331.35989 * 6 5 3 32 32 H 1.09004 * 108.91950 * 79.02505 * 7 6 5 33 33 H 1.08999 * 108.92133 * 197.67590 * 7 6 5 34 34 H 1.09002 * 108.98178 * 198.27175 * 8 7 6 35 35 H 1.09004 * 108.97794 * 79.55946 * 8 7 6 36 36 H 1.08999 * 109.46959 * 61.02649 * 10 9 8 37 37 H 1.08996 * 109.47429 * 181.03535 * 10 9 8 38 38 H 1.08997 * 109.46703 * 187.03345 * 11 10 9 39 39 H 1.09004 * 109.47039 * 307.03167 * 11 10 9 40 40 H 1.08999 * 109.46791 * 299.99819 * 13 12 11 41 41 H 1.08998 * 109.47329 * 60.00165 * 13 12 11 42 42 H 0.97007 * 119.99335 * 179.97438 * 17 16 14 43 43 H 1.09000 * 108.79179 * 60.98707 * 22 3 2 44 44 H 1.08995 * 108.70598 * 302.69091 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6155 1.9688 0.8549 5 6 1.5812 2.1399 -1.3002 6 6 1.6901 3.6293 -1.1176 7 6 3.0469 4.1971 -1.5838 8 6 4.2292 3.3011 -1.1678 9 7 4.0751 2.7915 0.1731 10 6 5.3598 2.7867 0.8854 11 6 6.3634 1.9207 0.1212 12 8 6.6732 2.5409 -1.1283 13 6 7.6070 1.8087 -1.9248 14 6 7.8596 2.5508 -3.2119 15 1 7.3571 3.4875 -3.4028 16 6 8.7315 2.0333 -4.1462 17 7 8.9524 2.6811 -5.2693 18 14 9.6001 0.4128 -3.8164 19 1 8.7727 -0.7066 -4.3338 20 1 10.9190 0.4101 -4.4989 21 1 9.7992 0.2465 -2.3542 22 6 3.4937 1.4336 0.1201 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.2179 1.8258 -2.1273 29 1 0.5466 1.8708 -1.5133 30 1 0.8944 4.1114 -1.6855 31 1 1.5580 3.8638 -0.0614 32 1 3.0375 4.2881 -2.6700 33 1 3.1846 5.1865 -1.1477 34 1 5.1503 3.8814 -1.2227 35 1 4.2989 2.4620 -1.8601 36 1 5.7396 3.8059 0.9565 37 1 5.2184 2.3808 1.8871 38 1 7.2744 1.8149 0.7102 39 1 5.9308 0.9365 -0.0590 40 1 8.5439 1.7002 -1.3784 41 1 7.1998 0.8225 -2.1475 42 1 9.5661 2.3171 -5.9264 43 1 3.9135 0.9050 -0.7357 44 1 3.7660 0.8994 1.0303 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703643976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:27 Heat of formation + Delta-G solvation = -79.173172 kcal Electronic energy + Delta-G solvation = -20327.232551 eV Core-core repulsion = 17471.154900 eV Total energy + Delta-G solvation = -2856.077651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83691 -38.66226 -36.38358 -34.92377 -34.54234 -31.19261 -30.79794 -29.51493 -26.98546 -25.56527 -24.21660 -23.92573 -22.29363 -20.92323 -20.34898 -19.04226 -17.59372 -17.36950 -16.60335 -16.43906 -16.19817 -15.66397 -15.48922 -14.95573 -14.72903 -14.64822 -14.55139 -14.02406 -13.63201 -13.46856 -13.13726 -13.00379 -12.94004 -12.62551 -12.57089 -12.40572 -12.10827 -11.90002 -11.87475 -11.60149 -11.51164 -11.31790 -11.29135 -11.20922 -10.96593 -10.82456 -10.38871 -9.20242 -8.41159 -6.48806 1.28075 1.30652 1.41451 2.24464 2.90366 2.91480 3.11480 3.75428 3.97177 4.03805 4.13842 4.24648 4.27608 4.31219 4.35624 4.42952 4.46113 4.52983 4.57734 4.63285 4.67957 4.84914 4.88195 4.92067 4.92752 4.95659 5.04979 5.10478 5.14071 5.23437 5.26873 5.34445 5.39327 5.44065 5.45209 5.51032 5.61012 5.62520 5.88202 6.22823 6.23033 6.54887 6.68752 7.15569 8.75834 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.005162 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.670077 B = 5422.519536 C = 5536.709170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.076 4.076 4 H 0.082 0.918 5 C -0.114 4.114 6 C -0.100 4.100 7 C -0.111 4.111 8 C 0.071 3.929 9 N -0.518 5.518 10 C 0.063 3.937 11 C 0.012 3.988 12 O -0.393 6.393 13 C 0.179 3.821 14 C -0.541 4.541 15 H 0.031 0.969 16 C 0.015 3.985 17 N -0.940 5.940 18 Si 0.952 3.048 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.248 1.248 22 C 0.058 3.942 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.013 0.987 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.009 0.991 41 H 0.001 0.999 42 H 0.273 0.727 43 H 0.013 0.987 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.191 -5.503 14.463 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.094 4.094 4 H 0.100 0.900 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.149 4.149 8 C -0.058 4.058 9 N -0.240 5.240 10 C -0.065 4.065 11 C -0.066 4.066 12 O -0.312 6.312 13 C 0.103 3.897 14 C -0.579 4.579 15 H 0.050 0.950 16 C -0.183 4.183 17 N -0.580 5.580 18 Si 0.774 3.226 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.172 1.172 22 C -0.069 4.069 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.019 0.981 42 H 0.082 0.918 43 H 0.031 0.969 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.497 -4.993 14.504 21.805 hybrid contribution 1.568 -1.060 -1.085 2.182 sum -13.929 -6.053 13.419 20.267 Atomic orbital electron populations 1.21800 0.94667 1.01876 1.02237 1.21567 0.96988 0.95315 1.01757 1.20152 0.94210 0.96590 0.98482 0.89964 1.21486 1.01293 0.95434 0.96872 1.21116 0.95291 0.95482 1.01834 1.21973 0.94945 0.98794 0.99180 1.21760 0.97572 0.97819 0.88671 1.61856 1.23624 1.22078 1.16392 1.22510 0.86311 1.00431 0.97234 1.23451 0.99568 0.97243 0.86366 1.88003 1.63530 1.49312 1.30397 1.20272 0.88049 0.91464 0.89875 1.21108 1.26737 1.08227 1.01802 0.95035 1.25793 0.96657 1.01804 0.94035 1.70031 1.37242 1.41328 1.09363 0.85657 0.78460 0.78574 0.79950 1.18639 1.19595 1.17191 1.21121 0.96297 0.89018 1.00509 0.92469 0.92307 0.92064 0.93214 0.91286 0.94562 0.90149 0.92133 0.91317 0.93630 0.92180 0.92630 0.96842 0.90467 0.86417 0.92706 0.93920 0.97372 0.98118 0.91790 0.96870 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.67 71.98 0.70 -1.50 16 2 C -0.12 -2.12 5.34 30.60 0.16 -1.96 16 3 C -0.08 -1.61 1.94 -12.47 -0.02 -1.63 16 4 H 0.08 1.65 7.59 -2.39 -0.02 1.63 16 5 C -0.11 -2.65 4.89 30.28 0.15 -2.50 16 6 C -0.10 -2.39 5.42 30.21 0.16 -2.23 16 7 C -0.11 -3.34 6.15 31.39 0.19 -3.15 16 8 C 0.07 2.50 3.62 87.16 0.32 2.82 16 9 N -0.52 -14.90 4.45 -911.80 -4.06 -18.95 16 10 C 0.06 1.73 5.66 86.30 0.49 2.22 16 11 C 0.01 0.40 5.82 71.98 0.42 0.82 16 12 O -0.39 -18.00 7.02 -148.98 -1.05 -19.05 16 13 C 0.18 9.10 4.76 71.24 0.34 9.44 16 14 C -0.54 -33.17 9.99 25.60 0.26 -32.91 16 15 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 16 C 0.02 0.91 5.47 84.65 0.46 1.38 16 17 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 18 Si 0.95 43.95 27.47 68.60 1.88 45.83 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 22 C 0.06 1.47 3.07 83.94 0.26 1.73 16 23 H 0.06 0.86 6.16 -2.39 -0.01 0.85 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 28 H 0.04 1.03 7.15 -2.39 -0.02 1.01 16 29 H 0.08 1.57 5.85 -2.38 -0.01 1.56 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.58 7.38 -2.39 -0.02 1.57 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 2.34 5.85 -2.39 -0.01 2.32 16 35 H 0.01 0.55 6.33 -2.38 -0.02 0.53 16 36 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 37 H 0.12 2.37 7.97 -2.39 -0.02 2.35 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.39 6.75 -2.39 -0.02 1.38 16 40 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 41 H 0.00 0.06 7.57 -2.39 -0.02 0.04 16 42 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 43 H 0.01 0.40 6.72 -2.39 -0.02 0.39 16 44 H 0.08 1.70 7.63 -2.39 -0.02 1.69 16 Total: -1.00 -67.93 325.12 1.84 -66.09 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.88 Total: 12.79 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.88 Total: -27.46 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -3.76 Total: -78.20 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.05 Total: -19.05 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Total: -67.93 1.84 -66.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703643976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.083 kcal (2) G-P(sol) polarization free energy of solvation -67.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds