Wall clock time and date at job start Mon Mar 30 2020 07:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47304 * 2 1 4 4 H 1.09005 * 109.53630 * 305.00105 * 3 2 1 5 5 C 1.50754 * 109.54173 * 65.17363 * 3 2 1 6 6 C 1.54270 * 112.55883 * 212.82596 * 5 3 2 7 7 C 1.53817 * 112.02790 * 318.61133 * 6 5 3 8 8 C 1.50816 * 111.61785 * 318.99988 * 7 6 5 9 9 N 1.47634 * 108.03613 * 95.07030 * 8 7 6 10 10 C 1.46898 * 110.99920 * 150.30477 * 9 8 7 11 11 C 1.52997 * 109.46859 * 204.74219 * 10 9 8 12 12 O 1.42908 * 109.47076 * 63.79415 * 11 10 9 13 13 C 1.42900 * 113.99640 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46428 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00288 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99804 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99995 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00099 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47085 * 60.00163 * 18 16 14 20 20 H 1.48507 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47338 * 299.99950 * 18 16 14 22 22 C 1.39780 * 114.76787 * 277.16962 * 9 8 7 23 23 H 1.08994 * 109.47133 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47005 * 300.00429 * 1 2 3 25 25 H 1.08997 * 109.47188 * 60.00192 * 1 2 3 26 26 H 1.08993 * 109.47113 * 239.99723 * 2 1 3 27 27 H 1.08997 * 109.47188 * 119.99807 * 2 1 3 28 28 H 1.08994 * 108.85534 * 333.76964 * 5 3 2 29 29 H 1.08992 * 108.84996 * 92.16089 * 5 3 2 30 30 H 1.09006 * 108.98555 * 197.93364 * 6 5 3 31 31 H 1.08995 * 108.84662 * 79.20575 * 6 5 3 32 32 H 1.09003 * 109.05165 * 198.45025 * 7 6 5 33 33 H 1.09003 * 109.04977 * 79.55205 * 7 6 5 34 34 H 1.08991 * 109.75319 * 335.43125 * 8 7 6 35 35 H 1.09005 * 109.79108 * 214.72335 * 8 7 6 36 36 H 1.09003 * 109.47442 * 324.74306 * 10 9 8 37 37 H 1.09003 * 109.46956 * 84.74735 * 10 9 8 38 38 H 1.09000 * 109.47418 * 183.79177 * 11 10 9 39 39 H 1.09002 * 109.47552 * 303.79595 * 11 10 9 40 40 H 1.09000 * 109.47237 * 299.99689 * 13 12 11 41 41 H 1.08999 * 109.47417 * 60.00147 * 13 12 11 42 42 H 0.97004 * 119.99839 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.02022 * 301.68822 * 22 9 8 44 44 H 1.08998 * 108.96023 * 182.81869 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6061 1.9826 -0.8415 5 6 1.6458 2.1168 1.2894 6 6 1.3648 3.6228 1.1079 7 6 2.3878 4.2921 0.1744 8 6 3.7871 3.7932 0.4347 9 7 4.0653 2.6968 -0.5141 10 6 5.4973 2.6288 -0.8347 11 6 5.6830 1.9649 -2.2006 12 8 5.0829 2.7780 -3.2110 13 6 5.2003 2.2449 -4.5316 14 6 4.5369 3.1788 -5.5109 15 1 4.0719 4.0880 -5.1599 16 6 4.5228 2.8717 -6.8550 17 7 5.0887 1.7641 -7.2825 18 14 3.7000 4.0288 -8.0688 19 1 4.3603 5.3577 -8.0114 20 1 3.8220 3.4750 -9.4414 21 1 2.2641 4.1740 -7.7190 22 6 3.5796 1.4460 -0.1224 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7504 1.6335 1.6802 29 1 2.4530 1.9952 2.0116 30 1 1.4017 4.1103 2.0821 31 1 0.3669 3.7466 0.6874 32 1 2.3598 5.3705 0.3307 33 1 2.1199 4.0767 -0.8599 34 1 3.8621 3.4233 1.4571 35 1 4.5017 4.6022 0.2824 36 1 5.9120 3.6364 -0.8611 37 1 6.0126 2.0435 -0.0732 38 1 6.7471 1.8533 -2.4086 39 1 5.2090 0.9834 -2.1950 40 1 6.2543 2.1388 -4.7883 41 1 4.7159 1.2694 -4.5741 42 1 5.0791 1.5483 -8.2282 43 1 4.0133 1.1827 0.8422 44 1 3.8790 0.7027 -0.8612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703643977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:30 Heat of formation + Delta-G solvation = -63.273943 kcal Electronic energy + Delta-G solvation = -19992.599319 eV Core-core repulsion = 17137.211110 eV Total energy + Delta-G solvation = -2855.388209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64739 -36.72338 -35.23322 -33.70340 -32.58494 -29.94671 -29.39393 -26.92443 -25.62109 -24.98863 -22.70067 -22.17924 -20.91686 -20.34223 -19.11081 -16.34104 -16.17126 -15.67478 -15.29155 -14.96498 -14.64206 -14.45196 -14.13926 -14.08001 -13.53532 -13.21028 -13.01989 -12.42596 -12.26235 -12.05247 -11.76684 -11.70954 -11.48876 -11.18773 -11.05677 -10.87226 -10.76476 -10.73530 -10.50572 -10.35751 -10.24758 -10.10015 -10.05908 -9.87920 -9.01299 -8.70672 -8.04604 -7.81823 -6.03578 -4.04234 3.36927 3.39057 3.43469 4.09761 4.41559 4.74409 4.81491 4.91270 4.98821 5.14450 5.16255 5.28222 5.32761 5.34091 5.48164 5.53488 5.61292 5.64164 5.69000 5.77064 5.80407 5.89196 5.93421 5.95456 6.03020 6.10889 6.12013 6.14900 6.22986 6.28494 6.30963 6.37593 6.44181 6.58136 6.65581 7.20240 7.43693 7.53298 7.75522 7.88261 8.25709 8.72209 9.10838 9.60326 11.08120 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.004922 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.484745 B = 5687.560433 C = 5943.454609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.087 4.087 4 H 0.086 0.914 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.121 4.121 8 C 0.071 3.929 9 N -0.541 5.541 10 C 0.066 3.934 11 C 0.067 3.933 12 O -0.379 6.379 13 C 0.195 3.805 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.083 3.917 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.263 0.737 43 H 0.009 0.991 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -0.824 18.381 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.106 4.106 4 H 0.104 0.896 5 C -0.154 4.154 6 C -0.153 4.153 7 C -0.159 4.159 8 C -0.056 4.056 9 N -0.265 5.265 10 C -0.061 4.061 11 C -0.011 4.011 12 O -0.298 6.298 13 C 0.120 3.880 14 C -0.547 4.547 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.046 4.046 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.589 -0.646 17.864 18.729 hybrid contribution 0.211 -0.054 -0.109 0.243 sum -5.379 -0.700 17.755 18.565 Atomic orbital electron populations 1.21824 0.95982 1.01220 1.01912 1.21531 0.95779 0.96399 1.01799 1.21080 0.95064 0.95680 0.98736 0.89551 1.21560 1.01033 0.95280 0.97528 1.21913 0.99150 0.95078 0.99131 1.21432 0.94117 0.98798 1.01545 1.21786 0.97386 0.93441 0.92972 1.58517 1.15727 1.05719 1.46518 1.22143 0.87299 1.01419 0.95208 1.22260 0.95874 0.94053 0.88901 1.87937 1.78091 1.47098 1.16673 1.20148 0.95511 0.94453 0.77852 1.21028 1.35730 1.07145 0.90827 0.91629 1.24940 0.95766 0.95681 0.98161 1.69964 1.44635 1.24101 1.15360 0.86422 0.79963 0.80727 0.79498 1.20073 1.21240 1.20048 1.21000 0.94659 0.91205 0.97762 0.93079 0.92720 0.92492 0.91665 0.92537 0.92004 0.92988 0.92924 0.92423 0.92332 0.89865 0.94782 0.91175 0.90381 0.94392 0.94586 0.94786 0.98154 0.98013 0.92739 0.97284 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.71 37.16 0.36 -1.18 16 2 C -0.12 -1.32 5.31 -26.73 -0.14 -1.46 16 3 C -0.09 -1.09 1.91 -90.99 -0.17 -1.27 16 4 H 0.09 1.29 7.11 -51.93 -0.37 0.92 16 5 C -0.12 -1.26 4.77 -27.19 -0.13 -1.39 16 6 C -0.12 -1.24 5.91 -25.64 -0.15 -1.39 16 7 C -0.12 -1.52 5.41 -27.40 -0.15 -1.67 16 8 C 0.07 0.92 5.37 -4.52 -0.02 0.90 16 9 N -0.54 -8.34 3.81 -240.00 -0.91 -9.25 16 10 C 0.07 1.03 5.42 -3.83 -0.02 1.01 16 11 C 0.07 1.30 6.10 37.16 0.23 1.52 16 12 O -0.38 -9.44 10.26 -35.23 -0.36 -9.80 16 13 C 0.19 5.51 5.69 36.01 0.20 5.71 16 14 C -0.51 -15.37 9.43 -34.44 -0.32 -15.69 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 18 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.08 1.17 4.15 -6.74 -0.03 1.14 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.50 6.26 -51.93 -0.32 0.18 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.61 5.77 -51.93 -0.30 0.31 16 29 H 0.05 0.57 6.59 -51.93 -0.34 0.22 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.28 7.26 -51.93 -0.38 0.90 16 34 H 0.03 0.41 6.67 -51.93 -0.35 0.06 16 35 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 36 H 0.08 1.20 7.41 -51.93 -0.38 0.81 16 37 H 0.04 0.50 7.98 -51.93 -0.41 0.09 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.65 6.62 -51.93 -0.34 0.30 16 40 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 41 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.01 0.12 7.55 -51.93 -0.39 -0.27 16 44 H 0.07 1.10 6.20 -51.93 -0.32 0.78 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -31.33 333.10 -9.05 -40.38 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -8.07 Total: -4.64 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.45 Total: -12.23 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.18 Total: -36.01 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.36 Total: -9.80 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.33 -9.05 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703643977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.889 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds