Wall clock time and date at job start Mon Mar 30 2020 07:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47304 * 2 1 4 4 H 1.09005 * 109.53630 * 305.00105 * 3 2 1 5 5 C 1.50754 * 109.54173 * 65.17363 * 3 2 1 6 6 C 1.54270 * 112.55883 * 212.82596 * 5 3 2 7 7 C 1.53817 * 112.02790 * 318.61133 * 6 5 3 8 8 C 1.50816 * 111.61785 * 318.99988 * 7 6 5 9 9 N 1.47634 * 108.03613 * 95.07030 * 8 7 6 10 10 C 1.46898 * 110.99920 * 150.30477 * 9 8 7 11 11 C 1.52997 * 109.46859 * 204.74219 * 10 9 8 12 12 O 1.42908 * 109.47076 * 63.79415 * 11 10 9 13 13 C 1.42900 * 113.99640 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46428 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00288 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99804 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99995 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00099 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47085 * 60.00163 * 18 16 14 20 20 H 1.48507 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47338 * 299.99950 * 18 16 14 22 22 C 1.39780 * 114.76787 * 277.16962 * 9 8 7 23 23 H 1.08994 * 109.47133 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47005 * 300.00429 * 1 2 3 25 25 H 1.08997 * 109.47188 * 60.00192 * 1 2 3 26 26 H 1.08993 * 109.47113 * 239.99723 * 2 1 3 27 27 H 1.08997 * 109.47188 * 119.99807 * 2 1 3 28 28 H 1.08994 * 108.85534 * 333.76964 * 5 3 2 29 29 H 1.08992 * 108.84996 * 92.16089 * 5 3 2 30 30 H 1.09006 * 108.98555 * 197.93364 * 6 5 3 31 31 H 1.08995 * 108.84662 * 79.20575 * 6 5 3 32 32 H 1.09003 * 109.05165 * 198.45025 * 7 6 5 33 33 H 1.09003 * 109.04977 * 79.55205 * 7 6 5 34 34 H 1.08991 * 109.75319 * 335.43125 * 8 7 6 35 35 H 1.09005 * 109.79108 * 214.72335 * 8 7 6 36 36 H 1.09003 * 109.47442 * 324.74306 * 10 9 8 37 37 H 1.09003 * 109.46956 * 84.74735 * 10 9 8 38 38 H 1.09000 * 109.47418 * 183.79177 * 11 10 9 39 39 H 1.09002 * 109.47552 * 303.79595 * 11 10 9 40 40 H 1.09000 * 109.47237 * 299.99689 * 13 12 11 41 41 H 1.08999 * 109.47417 * 60.00147 * 13 12 11 42 42 H 0.97004 * 119.99839 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.02022 * 301.68822 * 22 9 8 44 44 H 1.08998 * 108.96023 * 182.81869 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6061 1.9826 -0.8415 5 6 1.6458 2.1168 1.2894 6 6 1.3648 3.6228 1.1079 7 6 2.3878 4.2921 0.1744 8 6 3.7871 3.7932 0.4347 9 7 4.0653 2.6968 -0.5141 10 6 5.4973 2.6288 -0.8347 11 6 5.6830 1.9649 -2.2006 12 8 5.0829 2.7780 -3.2110 13 6 5.2003 2.2449 -4.5316 14 6 4.5369 3.1788 -5.5109 15 1 4.0719 4.0880 -5.1599 16 6 4.5228 2.8717 -6.8550 17 7 5.0887 1.7641 -7.2825 18 14 3.7000 4.0288 -8.0688 19 1 4.3603 5.3577 -8.0114 20 1 3.8220 3.4750 -9.4414 21 1 2.2641 4.1740 -7.7190 22 6 3.5796 1.4460 -0.1224 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.7504 1.6335 1.6802 29 1 2.4530 1.9952 2.0116 30 1 1.4017 4.1103 2.0821 31 1 0.3669 3.7466 0.6874 32 1 2.3598 5.3705 0.3307 33 1 2.1199 4.0767 -0.8599 34 1 3.8621 3.4233 1.4571 35 1 4.5017 4.6022 0.2824 36 1 5.9120 3.6364 -0.8611 37 1 6.0126 2.0435 -0.0732 38 1 6.7471 1.8533 -2.4086 39 1 5.2090 0.9834 -2.1950 40 1 6.2543 2.1388 -4.7883 41 1 4.7159 1.2694 -4.5741 42 1 5.0791 1.5483 -8.2282 43 1 4.0133 1.1827 0.8422 44 1 3.8790 0.7027 -0.8612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703643977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:29 Heat of formation + Delta-G solvation = -82.318595 kcal Electronic energy + Delta-G solvation = -19993.425157 eV Core-core repulsion = 17137.211110 eV Total energy + Delta-G solvation = -2856.214047 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73738 -38.48220 -36.45699 -34.96760 -34.57728 -31.02599 -30.77424 -28.95120 -26.81560 -25.97663 -24.48785 -23.77941 -22.07023 -21.47056 -20.06669 -18.60943 -17.48273 -17.35205 -16.63004 -16.20932 -16.09522 -15.96452 -15.45274 -15.29869 -14.74366 -14.71183 -14.23230 -13.76409 -13.65476 -13.31375 -13.07207 -12.93416 -12.84481 -12.67842 -12.56888 -12.47690 -12.32653 -12.08014 -11.80428 -11.55447 -11.46331 -11.31436 -11.22632 -11.05023 -11.01669 -10.83160 -10.15783 -8.95648 -8.30872 -6.42928 1.39119 1.44420 1.52721 2.35523 2.96565 3.02518 3.27046 3.76775 3.86031 3.98346 4.16347 4.22680 4.29049 4.31404 4.36377 4.40460 4.52156 4.57455 4.62864 4.66574 4.68100 4.78579 4.82367 4.85892 4.93185 4.98805 5.00501 5.02452 5.17536 5.19353 5.20840 5.23153 5.36305 5.40197 5.52104 5.56157 5.59011 5.64538 5.98742 6.29158 6.56802 6.66098 6.88461 7.29330 8.81423 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.004922 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.484745 B = 5687.560433 C = 5943.454609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.083 4.083 4 H 0.054 0.946 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.119 4.119 8 C 0.073 3.927 9 N -0.568 5.568 10 C 0.075 3.925 11 C 0.058 3.942 12 O -0.393 6.393 13 C 0.211 3.789 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.932 5.932 18 Si 0.982 3.018 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.267 1.267 22 C 0.084 3.916 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.031 0.969 40 H -0.017 1.017 41 H -0.022 1.022 42 H 0.270 0.730 43 H 0.027 0.973 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 -0.061 19.802 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.102 4.102 4 H 0.073 0.927 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.053 4.053 9 N -0.292 5.292 10 C -0.052 4.052 11 C -0.020 4.020 12 O -0.312 6.312 13 C 0.136 3.864 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.192 1.192 22 C -0.045 4.045 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.000 1.000 41 H -0.004 1.004 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.338 0.111 19.313 20.326 hybrid contribution 0.488 -0.348 -0.512 0.788 sum -5.850 -0.236 18.800 19.691 Atomic orbital electron populations 1.21803 0.94969 1.01964 1.01906 1.21518 0.96658 0.95462 1.01709 1.21020 0.93981 0.96397 0.98756 0.92712 1.21515 1.01915 0.95192 0.96284 1.21892 0.98383 0.95045 0.99584 1.21403 0.94590 0.99821 0.99921 1.21822 0.97475 0.92673 0.93306 1.58461 1.15597 1.06908 1.48236 1.22062 0.88180 1.01636 0.93361 1.22619 0.95937 0.93946 0.89459 1.87895 1.78917 1.48243 1.16171 1.19755 0.93816 0.93204 0.79669 1.21339 1.37134 1.07596 0.92188 0.92236 1.25962 0.95849 0.97434 0.99958 1.70075 1.45075 1.25688 1.16290 0.85252 0.78953 0.78487 0.76821 1.18891 1.19824 1.19178 1.20997 0.95629 0.90170 0.97734 0.91983 0.91311 0.93881 0.93469 0.90890 0.90517 0.92226 0.90826 0.92472 0.91169 0.93486 0.92848 0.91011 0.90132 0.91226 0.93711 0.95059 0.99964 1.00411 0.92085 0.95546 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.71 71.98 0.70 -2.16 16 2 C -0.12 -2.53 5.31 30.60 0.16 -2.37 16 3 C -0.08 -2.05 1.91 -11.03 -0.02 -2.07 16 4 H 0.05 1.71 7.11 -2.38 -0.02 1.69 16 5 C -0.11 -2.18 4.77 30.30 0.14 -2.03 16 6 C -0.11 -2.18 5.91 31.30 0.19 -1.99 16 7 C -0.12 -2.91 5.41 30.16 0.16 -2.74 16 8 C 0.07 1.80 5.37 85.45 0.46 2.26 16 9 N -0.57 -17.30 3.81 -913.23 -3.48 -20.78 16 10 C 0.07 2.27 5.42 86.30 0.47 2.74 16 11 C 0.06 2.28 6.10 71.98 0.44 2.72 16 12 O -0.39 -20.30 10.26 -148.98 -1.53 -21.83 16 13 C 0.21 12.45 5.69 71.24 0.41 12.86 16 14 C -0.54 -33.80 9.43 25.60 0.24 -33.55 16 15 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 16 C 0.01 0.37 5.46 84.65 0.46 0.83 16 17 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 18 Si 0.98 45.66 29.54 68.60 2.03 47.69 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 C 0.08 2.32 4.15 88.07 0.37 2.68 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.12 6.26 -2.38 -0.01 1.10 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 1.18 8.06 -2.39 -0.02 1.16 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.28 5.77 -2.39 -0.01 1.27 16 29 H 0.06 1.09 6.59 -2.39 -0.02 1.08 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.15 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.49 7.26 -2.39 -0.02 1.47 16 34 H 0.05 1.11 6.67 -2.39 -0.02 1.10 16 35 H 0.07 1.72 7.38 -2.38 -0.02 1.70 16 36 H 0.08 2.40 7.41 -2.39 -0.02 2.38 16 37 H 0.07 1.70 7.98 -2.39 -0.02 1.68 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.03 1.24 6.62 -2.39 -0.02 1.23 16 40 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 41 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.03 0.64 7.55 -2.39 -0.02 0.62 16 44 H 0.05 1.55 6.20 -2.39 -0.01 1.54 16 Total: -1.00 -68.62 333.10 2.42 -66.21 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.94 Total: 8.87 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 4.17 Total: -22.84 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -3.19 Total: -78.09 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -1.53 Total: -21.83 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -68.62 2.42 -66.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703643977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.111 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds