Wall clock time and date at job start Mon Mar 30 2020 07:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99751 * 2 1 4 4 C 1.53777 * 113.61129 * 249.13211 * 3 2 1 5 5 C 1.54048 * 86.98917 * 270.83869 * 4 3 2 6 6 C 1.53006 * 113.61976 * 220.02561 * 5 4 3 7 7 N 1.46905 * 109.46822 * 272.49212 * 6 5 4 8 8 C 1.46897 * 110.99899 * 190.00124 * 7 6 5 9 9 C 1.50694 * 109.47172 * 155.76668 * 8 7 6 10 10 H 1.07995 * 120.00212 * 2.85438 * 9 8 7 11 11 C 1.37881 * 120.00217 * 182.85459 * 9 8 7 12 12 N 1.31512 * 119.99807 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00121 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47200 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47153 * 119.99831 * 13 11 9 16 16 H 1.48500 * 109.46812 * 239.99438 * 13 11 9 17 17 C 1.46895 * 110.99708 * 66.04916 * 7 6 5 18 18 C 1.53002 * 109.46909 * 197.12116 * 17 7 6 19 19 C 1.52996 * 109.47209 * 60.97831 * 18 17 7 20 20 C 1.53002 * 109.47237 * 180.98361 * 18 17 7 21 21 C 1.53785 * 113.61439 * 151.52591 * 3 2 1 22 22 H 1.09004 * 109.46882 * 60.00620 * 1 2 3 23 23 H 1.08993 * 109.47538 * 300.00076 * 1 2 3 24 24 H 1.09001 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.08993 * 112.84758 * 20.33337 * 3 2 1 26 26 H 1.08997 * 113.62012 * 25.43329 * 4 3 2 27 27 H 1.09001 * 113.61436 * 156.33517 * 4 3 2 28 28 H 1.09003 * 113.68787 * 89.12884 * 5 4 3 29 29 H 1.08994 * 109.47021 * 32.49547 * 6 5 4 30 30 H 1.08998 * 109.46877 * 152.49753 * 6 5 4 31 31 H 1.09000 * 109.47304 * 275.77215 * 8 7 6 32 32 H 1.09007 * 109.46930 * 35.76659 * 8 7 6 33 33 H 0.97003 * 120.00217 * 180.02562 * 12 11 9 34 34 H 1.08999 * 109.47539 * 317.11304 * 17 7 6 35 35 H 1.08992 * 109.47739 * 77.12365 * 17 7 6 36 36 H 1.09002 * 109.47127 * 300.98327 * 18 17 7 37 37 H 1.08993 * 109.47297 * 300.00115 * 19 18 17 38 38 H 1.08999 * 109.47153 * 60.00371 * 19 18 17 39 39 H 1.09006 * 109.47485 * 180.02562 * 19 18 17 40 40 H 1.08991 * 109.47491 * 59.99831 * 20 18 17 41 41 H 1.09006 * 109.46991 * 180.02562 * 20 18 17 42 42 H 1.08999 * 109.46919 * 299.99503 * 20 18 17 43 43 H 1.08995 * 113.61119 * 203.66162 * 21 3 2 44 44 H 1.08997 * 113.61328 * 334.57287 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 2.7192 1.6641 -1.3166 5 6 3.9895 1.0405 -0.7078 6 6 5.2669 1.8221 -1.0215 7 7 5.8230 1.3586 -2.2998 8 6 7.1661 1.9109 -2.5208 9 6 7.9300 1.0136 -3.4600 10 1 7.4493 0.1472 -3.8897 11 6 9.2427 1.2986 -3.7708 12 7 9.8280 2.3539 -3.2480 13 14 10.1894 0.1867 -4.9356 14 1 9.3110 -0.9237 -5.3834 15 1 10.6367 0.9709 -6.1146 16 1 11.3735 -0.3714 -4.2343 17 6 4.9269 1.6914 -3.4152 18 6 5.2989 0.8490 -4.6371 19 6 5.1345 -0.6349 -4.3027 20 6 4.3814 1.2131 -5.8061 21 6 3.3922 1.3646 0.6718 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.3218 2.0752 0.3490 26 1 2.3359 1.1216 -2.1808 27 1 2.7999 2.7370 -1.4909 28 1 4.0886 -0.0277 -0.9008 29 1 5.0350 2.8849 -1.0901 30 1 5.9962 1.6598 -0.2279 31 1 7.0824 2.9064 -2.9569 32 1 7.6939 1.9744 -1.5691 33 1 10.7515 2.5547 -3.4669 34 1 3.8965 1.4807 -3.1289 35 1 5.0273 2.7490 -3.6590 36 1 6.3347 1.0466 -4.9129 37 1 5.7881 -0.8943 -3.4699 38 1 4.0987 -0.8326 -4.0268 39 1 5.3999 -1.2352 -5.1730 40 1 4.4986 2.2702 -6.0444 41 1 4.6462 0.6126 -6.6765 42 1 3.3456 1.0154 -5.5303 43 1 3.6566 2.3557 1.0401 44 1 3.5519 0.5803 1.4117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704216184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:30 Heat of formation + Delta-G solvation = -46.298675 kcal Electronic energy + Delta-G solvation = -20237.851445 eV Core-core repulsion = 17383.199339 eV Total energy + Delta-G solvation = -2854.652106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77377 -38.87967 -36.80602 -35.13012 -34.32696 -29.95683 -28.39587 -27.80205 -27.44806 -26.49928 -25.89786 -23.67155 -22.11445 -20.61451 -20.24557 -18.45646 -17.40864 -16.98975 -16.51989 -16.30764 -16.07392 -15.66050 -15.46483 -14.90651 -14.45890 -14.19310 -14.12245 -13.88252 -13.59437 -13.29576 -13.13960 -12.94301 -12.76642 -12.62656 -12.56616 -12.35391 -12.24659 -11.99540 -11.71437 -11.59518 -11.53157 -11.36243 -11.10115 -10.92685 -10.77996 -10.49106 -10.28817 -8.89270 -8.11999 -6.17230 1.40902 1.42318 1.55180 2.44013 2.80483 3.18458 3.34367 3.71117 3.73579 3.93100 4.05191 4.21867 4.32274 4.41628 4.54407 4.55704 4.59840 4.61888 4.77056 4.81292 4.83772 4.84562 4.88425 4.91407 4.93654 4.95203 5.07648 5.14695 5.17199 5.19251 5.24928 5.33238 5.36306 5.46644 5.54192 5.68579 5.84526 5.88974 6.19328 6.37766 6.53293 6.75961 6.98380 7.49254 8.98813 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.005348 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.299737 B = 5233.925614 C = 5767.532310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.071 3.929 4 C -0.152 4.152 5 C -0.093 4.093 6 C 0.066 3.934 7 N -0.536 5.536 8 C 0.207 3.793 9 C -0.502 4.502 10 H 0.084 0.916 11 C -0.004 4.004 12 N -0.941 5.941 13 Si 0.957 3.043 14 H -0.260 1.260 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.073 3.927 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.136 4.136 21 C -0.131 4.131 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.023 0.977 30 H 0.054 0.946 31 H -0.042 1.042 32 H -0.005 1.005 33 H 0.260 0.740 34 H 0.089 0.911 35 H 0.001 0.999 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.757 -2.116 3.719 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.013 3.987 4 C -0.189 4.189 5 C -0.111 4.111 6 C -0.063 4.063 7 N -0.259 5.259 8 C 0.080 3.920 9 C -0.541 4.541 10 H 0.102 0.898 11 C -0.200 4.200 12 N -0.583 5.583 13 Si 0.783 3.217 14 H -0.184 1.184 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.055 4.055 18 C -0.130 4.130 19 C -0.177 4.177 20 C -0.194 4.194 21 C -0.169 4.169 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.072 0.928 31 H -0.024 1.024 32 H 0.014 0.986 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.019 0.981 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.457 -2.713 3.748 19.028 hybrid contribution 1.021 0.967 -0.505 1.494 sum -17.436 -1.746 3.243 17.820 Atomic orbital electron populations 1.22980 0.79528 1.03696 1.00874 1.87877 1.21407 1.27373 1.94661 1.23044 0.94406 0.85120 0.96172 1.23637 0.96328 1.01083 0.97891 1.22431 0.92261 0.99554 0.96902 1.22115 0.96381 0.95833 0.91933 1.62056 1.02580 1.59538 1.01767 1.19453 0.85861 0.91845 0.94800 1.21820 0.96015 1.10786 1.25444 0.89802 1.25875 0.98877 0.96846 0.98442 1.70109 1.13063 1.28743 1.46353 0.85502 0.78550 0.79130 0.78552 1.18397 1.20813 1.20889 1.22175 0.96760 0.95190 0.91349 1.21385 1.01032 0.95962 0.94579 1.21529 1.00765 0.94962 1.00444 1.21752 0.99414 1.00696 0.97508 1.23223 0.94359 1.02994 0.96295 0.93355 0.92710 0.88768 0.88835 0.91231 0.88957 0.90206 0.95927 0.92774 1.02417 0.98644 0.93158 0.89339 0.98083 0.91284 0.93524 0.92802 0.93785 0.93584 0.92339 0.91783 0.87804 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.85 113.37 1.23 1.62 16 2 O -0.39 -9.27 10.63 -148.98 -1.58 -10.85 16 3 C 0.07 1.50 4.36 31.12 0.14 1.63 16 4 C -0.15 -3.70 5.56 31.21 0.17 -3.53 16 5 C -0.09 -2.74 3.45 -10.17 -0.04 -2.77 16 6 C 0.07 2.40 4.84 86.30 0.42 2.82 16 7 N -0.54 -23.30 3.71 -900.81 -3.34 -26.64 16 8 C 0.21 11.19 4.78 85.56 0.41 11.60 16 9 C -0.50 -28.29 7.22 25.60 0.18 -28.10 16 10 H 0.08 4.56 4.55 -2.91 -0.01 4.54 16 11 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 12 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 13 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 17 C 0.07 2.80 4.20 86.30 0.36 3.17 16 18 C -0.11 -4.21 2.40 -10.79 -0.03 -4.24 16 19 C -0.12 -4.28 8.39 71.98 0.60 -3.68 16 20 C -0.14 -4.08 9.19 71.98 0.66 -3.42 16 21 C -0.13 -3.06 7.47 31.12 0.23 -2.83 16 22 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 23 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.52 7.88 -2.39 -0.02 1.50 16 26 H 0.07 1.75 7.30 -2.39 -0.02 1.74 16 27 H 0.09 2.11 7.90 -2.39 -0.02 2.09 16 28 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.02 0.81 7.83 -2.39 -0.02 0.79 16 30 H 0.05 2.10 7.80 -2.39 -0.02 2.08 16 31 H -0.04 -2.48 7.68 -2.39 -0.02 -2.49 16 32 H 0.00 -0.27 7.65 -2.38 -0.02 -0.29 16 33 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.09 2.91 4.37 -2.39 -0.01 2.90 16 35 H 0.00 0.04 7.74 -2.39 -0.02 0.02 16 36 H 0.07 3.21 5.13 -2.39 -0.01 3.20 16 37 H 0.05 1.92 6.72 -2.39 -0.02 1.90 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -65.21 337.03 3.14 -62.07 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.94 Total: 13.19 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 4.81 Total: -27.47 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.06 Total: -84.09 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.58 Total: -10.85 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.21 3.14 -62.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704216184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.776 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds