Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46937 * 2 1 4 4 C 1.53006 * 109.47040 * 184.23725 * 3 2 1 5 5 H 1.08999 * 109.47148 * 304.18440 * 4 3 2 6 6 C 1.52994 * 109.47283 * 184.18316 * 4 3 2 7 7 N 1.46903 * 109.47357 * 174.55358 * 6 4 3 8 8 C 1.46896 * 110.99978 * 183.37136 * 7 6 4 9 9 C 1.53008 * 109.46910 * 185.26124 * 8 7 6 10 10 C 1.50703 * 115.54910 * 62.20813 * 9 8 7 11 11 H 1.07993 * 120.00101 * 266.49736 * 10 9 8 12 12 C 1.37886 * 119.99921 * 86.49162 * 10 9 8 13 13 N 1.31504 * 119.99745 * 178.60689 * 12 10 9 14 14 Si 1.86805 * 119.99774 * 358.60442 * 12 10 9 15 15 H 1.48500 * 109.46651 * 91.22629 * 14 12 10 16 16 H 1.48501 * 109.46690 * 211.22277 * 14 12 10 17 17 H 1.48495 * 109.47156 * 331.22547 * 14 12 10 18 18 C 1.52999 * 117.49820 * 276.53884 * 9 8 7 19 19 C 1.52991 * 117.49840 * 207.87744 * 9 8 7 20 20 O 1.42896 * 109.46891 * 64.17977 * 4 3 2 21 21 C 1.42898 * 114.00394 * 215.64910 * 20 4 3 22 22 C 1.52994 * 109.47644 * 174.90035 * 21 20 4 23 23 H 1.09001 * 109.46836 * 299.99581 * 1 2 3 24 24 H 1.09001 * 109.47291 * 59.99803 * 1 2 3 25 25 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46836 * 240.00419 * 2 1 3 27 27 H 1.09000 * 109.47056 * 120.00944 * 2 1 3 28 28 H 1.09001 * 109.46852 * 64.24621 * 3 2 1 29 29 H 1.08994 * 109.47534 * 304.23796 * 3 2 1 30 30 H 1.09007 * 109.47090 * 294.54679 * 6 4 3 31 31 H 1.09002 * 109.47591 * 54.54937 * 6 4 3 32 32 H 1.00906 * 110.99374 * 307.32098 * 7 6 4 33 33 H 1.08998 * 109.47218 * 305.25558 * 8 7 6 34 34 H 1.08992 * 109.47494 * 65.26142 * 8 7 6 35 35 H 0.97003 * 119.99621 * 180.02562 * 13 12 10 36 36 H 1.09001 * 117.49878 * 0.02562 * 18 9 8 37 37 H 1.08996 * 117.49507 * 145.02399 * 18 9 8 38 38 H 1.09006 * 117.50182 * 214.97523 * 19 9 8 39 39 H 1.09008 * 117.49989 * 359.97438 * 19 9 8 40 40 H 1.09008 * 109.46996 * 54.90255 * 21 20 4 41 41 H 1.09004 * 109.47090 * 294.90343 * 21 20 4 42 42 H 1.09003 * 109.47375 * 59.99739 * 22 21 20 43 43 H 1.09002 * 109.47657 * 180.02562 * 22 21 20 44 44 H 1.09004 * 109.47129 * 300.00284 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5663 1.4438 -0.1066 5 1 3.9875 0.8460 0.7017 6 6 4.0837 2.8798 -0.0018 7 7 5.5524 2.8704 0.0270 8 6 6.0841 4.2277 0.2078 9 6 7.6102 4.1960 0.1016 10 6 8.1600 3.7451 -1.2271 11 1 8.4128 2.7068 -1.3826 12 6 8.3403 4.6584 -2.2443 13 7 8.8457 4.2701 -3.3946 14 14 7.8664 6.4471 -1.9883 15 1 9.0382 7.2009 -1.4745 16 1 7.4289 7.0331 -3.2808 17 1 6.7556 6.5293 -1.0062 18 6 8.3979 3.8172 1.3574 19 6 8.3937 5.2663 0.8640 20 8 3.9565 0.8875 -1.3637 21 6 5.1577 0.1153 -1.3099 22 6 5.4093 -0.5322 -2.6731 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.7401 1.9338 0.9256 29 1 1.6160 1.9778 -0.8495 30 1 3.7409 3.4533 -0.8631 31 1 3.7053 3.3365 0.9128 32 1 5.8959 2.2489 0.7440 33 1 5.6798 4.8822 -0.5644 34 1 5.7960 4.6031 1.1897 35 1 8.9728 4.9127 -4.1100 36 1 7.8290 3.5903 2.2590 37 1 9.3141 3.2424 1.2224 38 1 9.3073 5.6441 0.4047 39 1 7.8221 5.9934 1.4408 40 1 5.0567 -0.6615 -0.5519 41 1 5.9957 0.7643 -1.0557 42 1 5.5103 0.2445 -3.4312 43 1 6.3253 -1.1215 -2.6320 44 1 4.5712 -1.1812 -2.9273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707843987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -38.767354 kcal Electronic energy + Delta-G solvation = -19922.469085 eV Core-core repulsion = 17068.143562 eV Total energy + Delta-G solvation = -2854.325523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.54972 -37.17550 -34.84890 -34.13860 -31.92389 -31.09770 -29.17960 -26.64586 -25.32698 -23.44237 -22.24534 -21.69981 -21.18313 -20.87218 -18.82033 -16.83235 -16.26047 -15.38748 -15.20560 -14.76457 -14.68809 -14.17532 -13.83121 -13.49792 -13.35812 -13.08076 -12.72623 -12.60796 -12.37398 -12.07499 -11.76357 -11.71705 -11.51838 -11.24924 -11.03676 -10.88518 -10.72434 -10.62103 -10.50890 -10.39581 -10.35220 -10.01949 -9.53573 -8.99936 -8.93808 -8.44777 -8.39490 -7.59830 -5.95419 -3.93897 3.36533 3.45674 3.49039 4.07086 4.46565 4.54097 4.89674 4.99783 5.04196 5.21366 5.29314 5.32862 5.39330 5.54859 5.58505 5.65817 5.71870 5.78757 5.81114 5.87089 5.88374 5.96325 6.03460 6.07348 6.15005 6.19699 6.21919 6.25520 6.33036 6.37249 6.47173 6.54836 6.60000 6.61531 6.76445 7.11100 7.22846 7.70209 7.77281 7.86215 8.06877 8.67236 9.09495 9.68560 11.17372 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.005555 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.156452 B = 5039.303955 C = 5423.641345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.097 3.903 5 H 0.053 0.947 6 C 0.038 3.962 7 N -0.659 5.659 8 C 0.100 3.900 9 C 0.010 3.990 10 C -0.458 4.458 11 H 0.077 0.923 12 C 0.075 3.925 13 N -0.903 5.903 14 Si 0.878 3.122 15 H -0.282 1.282 16 H -0.296 1.296 17 H -0.262 1.262 18 C -0.184 4.184 19 C -0.204 4.204 20 O -0.372 6.372 21 C 0.058 3.942 22 C -0.147 4.147 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.328 0.672 33 H 0.068 0.932 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.381 -6.615 8.278 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.155 4.155 4 C 0.038 3.962 5 H 0.071 0.929 6 C -0.092 4.092 7 N -0.289 5.289 8 C -0.029 4.029 9 C 0.008 3.992 10 C -0.495 4.495 11 H 0.095 0.905 12 C -0.126 4.126 13 N -0.541 5.541 14 Si 0.707 3.293 15 H -0.209 1.209 16 H -0.223 1.223 17 H -0.187 1.187 18 C -0.222 4.222 19 C -0.242 4.242 20 O -0.291 6.291 21 C -0.019 4.019 22 C -0.204 4.204 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.372 -6.507 7.220 15.733 hybrid contribution -0.218 1.281 1.255 1.807 sum -12.590 -5.226 8.475 16.051 Atomic orbital electron populations 1.21770 0.96152 1.01298 1.01608 1.21467 0.95401 0.96816 1.02263 1.21708 0.94120 0.97435 1.02286 1.22034 0.93899 0.93345 0.86917 0.92862 1.22544 0.89734 0.96839 1.00097 1.60199 1.05092 1.10399 1.53208 1.21730 0.95775 0.88889 0.96539 1.19442 0.89016 0.97652 0.93051 1.20101 1.40357 0.96392 0.92680 0.90468 1.24909 0.94484 0.98311 0.94926 1.69886 1.45335 1.34756 1.04146 0.86897 0.79424 0.86024 0.76958 1.20879 1.22347 1.18660 1.22794 1.03317 0.97775 0.98295 1.22979 1.03642 0.91611 1.05939 1.87845 1.42498 1.68799 1.29961 1.22589 0.88647 0.93562 0.97056 1.21687 1.00732 1.00614 0.97362 0.93069 0.92716 0.93019 0.91125 0.92595 0.91252 0.91015 0.90508 0.95858 0.85462 0.91394 0.98210 0.92906 0.91571 0.89621 0.89437 0.91350 0.95203 0.90193 0.91464 0.91585 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.28 5.87 -26.73 -0.16 -1.44 16 3 C -0.12 -1.36 4.93 -26.73 -0.13 -1.49 16 4 C 0.10 1.36 2.37 -26.73 -0.06 1.30 16 5 H 0.05 0.70 7.63 -51.93 -0.40 0.30 16 6 C 0.04 0.60 5.35 -3.83 -0.02 0.58 16 7 N -0.66 -12.36 4.86 -113.78 -0.55 -12.91 16 8 C 0.10 2.07 5.17 -3.82 -0.02 2.05 16 9 C 0.01 0.22 1.01 -155.66 -0.16 0.06 16 10 C -0.46 -12.67 9.27 -34.44 -0.32 -12.98 16 11 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 12 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 14 Si 0.88 22.10 24.92 -169.99 -4.24 17.87 16 15 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 17 H -0.26 -6.24 5.66 56.52 0.32 -5.92 16 18 C -0.18 -3.71 9.96 -26.69 -0.27 -3.97 16 19 C -0.20 -4.36 7.64 -26.70 -0.20 -4.56 16 20 O -0.37 -6.16 9.39 -35.23 -0.33 -6.49 16 21 C 0.06 0.92 6.35 37.15 0.24 1.15 16 22 C -0.15 -2.20 10.28 37.15 0.38 -1.82 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.83 7.69 -51.93 -0.40 0.43 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.33 5.68 8.68 -39.29 -0.34 5.34 16 33 H 0.07 1.54 6.49 -51.93 -0.34 1.21 16 34 H 0.00 0.00 8.11 -51.93 -0.42 -0.42 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.09 1.98 7.31 -51.93 -0.38 1.60 16 39 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 40 H 0.03 0.41 7.98 -51.92 -0.41 0.00 16 41 H 0.08 1.48 6.79 -51.93 -0.35 1.12 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -29.94 347.61 -8.16 -38.09 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.60 Total: 5.26 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -0.45 Total: -20.04 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.22 Total: -39.92 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.33 Total: -6.49 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.24 Total: 17.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.94 -8.16 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707843987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.673 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds