Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46937 * 2 1 4 4 C 1.53006 * 109.47040 * 184.23725 * 3 2 1 5 5 H 1.08999 * 109.47148 * 304.18440 * 4 3 2 6 6 C 1.52994 * 109.47283 * 184.18316 * 4 3 2 7 7 N 1.46903 * 109.47357 * 174.55358 * 6 4 3 8 8 C 1.46896 * 110.99978 * 183.37136 * 7 6 4 9 9 C 1.53008 * 109.46910 * 185.26124 * 8 7 6 10 10 C 1.50703 * 115.54910 * 62.20813 * 9 8 7 11 11 H 1.07993 * 120.00101 * 266.49736 * 10 9 8 12 12 C 1.37886 * 119.99921 * 86.49162 * 10 9 8 13 13 N 1.31504 * 119.99745 * 178.60689 * 12 10 9 14 14 Si 1.86805 * 119.99774 * 358.60442 * 12 10 9 15 15 H 1.48500 * 109.46651 * 91.22629 * 14 12 10 16 16 H 1.48501 * 109.46690 * 211.22277 * 14 12 10 17 17 H 1.48495 * 109.47156 * 331.22547 * 14 12 10 18 18 C 1.52999 * 117.49820 * 276.53884 * 9 8 7 19 19 C 1.52991 * 117.49840 * 207.87744 * 9 8 7 20 20 O 1.42896 * 109.46891 * 64.17977 * 4 3 2 21 21 C 1.42898 * 114.00394 * 215.64910 * 20 4 3 22 22 C 1.52994 * 109.47644 * 174.90035 * 21 20 4 23 23 H 1.09001 * 109.46836 * 299.99581 * 1 2 3 24 24 H 1.09001 * 109.47291 * 59.99803 * 1 2 3 25 25 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46836 * 240.00419 * 2 1 3 27 27 H 1.09000 * 109.47056 * 120.00944 * 2 1 3 28 28 H 1.09001 * 109.46852 * 64.24621 * 3 2 1 29 29 H 1.08994 * 109.47534 * 304.23796 * 3 2 1 30 30 H 1.09007 * 109.47090 * 294.54679 * 6 4 3 31 31 H 1.09002 * 109.47591 * 54.54937 * 6 4 3 32 32 H 1.00906 * 110.99374 * 307.32098 * 7 6 4 33 33 H 1.08998 * 109.47218 * 305.25558 * 8 7 6 34 34 H 1.08992 * 109.47494 * 65.26142 * 8 7 6 35 35 H 0.97003 * 119.99621 * 180.02562 * 13 12 10 36 36 H 1.09001 * 117.49878 * 0.02562 * 18 9 8 37 37 H 1.08996 * 117.49507 * 145.02399 * 18 9 8 38 38 H 1.09006 * 117.50182 * 214.97523 * 19 9 8 39 39 H 1.09008 * 117.49989 * 359.97438 * 19 9 8 40 40 H 1.09008 * 109.46996 * 54.90255 * 21 20 4 41 41 H 1.09004 * 109.47090 * 294.90343 * 21 20 4 42 42 H 1.09003 * 109.47375 * 59.99739 * 22 21 20 43 43 H 1.09002 * 109.47657 * 180.02562 * 22 21 20 44 44 H 1.09004 * 109.47129 * 300.00284 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5663 1.4438 -0.1066 5 1 3.9875 0.8460 0.7017 6 6 4.0837 2.8798 -0.0018 7 7 5.5524 2.8704 0.0270 8 6 6.0841 4.2277 0.2078 9 6 7.6102 4.1960 0.1016 10 6 8.1600 3.7451 -1.2271 11 1 8.4128 2.7068 -1.3826 12 6 8.3403 4.6584 -2.2443 13 7 8.8457 4.2701 -3.3946 14 14 7.8664 6.4471 -1.9883 15 1 9.0382 7.2009 -1.4745 16 1 7.4289 7.0331 -3.2808 17 1 6.7556 6.5293 -1.0062 18 6 8.3979 3.8172 1.3574 19 6 8.3937 5.2663 0.8640 20 8 3.9565 0.8875 -1.3637 21 6 5.1577 0.1153 -1.3099 22 6 5.4093 -0.5322 -2.6731 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.7401 1.9338 0.9256 29 1 1.6160 1.9778 -0.8495 30 1 3.7409 3.4533 -0.8631 31 1 3.7053 3.3365 0.9128 32 1 5.8959 2.2489 0.7440 33 1 5.6798 4.8822 -0.5644 34 1 5.7960 4.6031 1.1897 35 1 8.9728 4.9127 -4.1100 36 1 7.8290 3.5903 2.2590 37 1 9.3141 3.2424 1.2224 38 1 9.3073 5.6441 0.4047 39 1 7.8221 5.9934 1.4408 40 1 5.0567 -0.6615 -0.5519 41 1 5.9957 0.7643 -1.0557 42 1 5.5103 0.2445 -3.4312 43 1 6.3253 -1.1215 -2.6320 44 1 4.5712 -1.1812 -2.9273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707843987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = -57.615476 kcal Electronic energy + Delta-G solvation = -19923.286401 eV Core-core repulsion = 17068.143562 eV Total energy + Delta-G solvation = -2855.142839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80184 -38.81880 -35.98448 -35.38925 -34.10020 -32.26985 -30.36178 -28.18866 -27.08016 -24.81517 -23.53010 -23.26593 -22.38897 -21.83624 -20.69886 -18.33960 -17.89142 -17.01542 -16.57770 -16.19691 -15.76338 -15.56558 -15.33468 -14.87289 -14.81486 -14.60337 -14.21476 -13.87753 -13.71724 -13.36187 -13.12739 -13.00287 -12.77929 -12.73983 -12.39743 -12.22234 -12.15258 -11.98122 -11.93533 -11.64745 -11.64259 -11.43593 -11.38770 -10.87325 -10.54213 -10.30567 -10.14639 -9.00209 -8.18254 -6.19594 1.35960 1.38951 1.50091 2.43072 2.92480 3.05298 3.17962 3.48409 3.91203 4.12935 4.14572 4.24027 4.28653 4.31052 4.37809 4.43187 4.52071 4.52668 4.53884 4.61958 4.72132 4.75136 4.78069 4.87166 4.87477 4.94557 5.00145 5.03181 5.11345 5.13761 5.28246 5.29717 5.34970 5.41181 5.44334 5.51855 5.55471 5.80327 6.29141 6.44780 6.52395 6.70792 6.86241 7.46081 8.98443 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.005555 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.156452 B = 5039.303955 C = 5423.641345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.112 4.112 4 C 0.095 3.905 5 H 0.067 0.933 6 C 0.040 3.960 7 N -0.679 5.679 8 C 0.109 3.891 9 C -0.019 4.019 10 C -0.448 4.448 11 H 0.029 0.971 12 C 0.014 3.986 13 N -0.956 5.956 14 Si 0.936 3.064 15 H -0.273 1.273 16 H -0.305 1.305 17 H -0.236 1.236 18 C -0.162 4.162 19 C -0.200 4.200 20 O -0.392 6.392 21 C 0.060 3.940 22 C -0.145 4.145 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.337 0.663 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.259 0.741 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.228 -6.231 11.285 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.150 4.150 4 C 0.037 3.963 5 H 0.085 0.915 6 C -0.089 4.089 7 N -0.310 5.310 8 C -0.020 4.020 9 C -0.021 4.021 10 C -0.486 4.486 11 H 0.048 0.952 12 C -0.182 4.182 13 N -0.598 5.598 14 Si 0.762 3.238 15 H -0.199 1.199 16 H -0.233 1.233 17 H -0.159 1.159 18 C -0.199 4.199 19 C -0.238 4.238 20 O -0.311 6.311 21 C -0.016 4.016 22 C -0.202 4.202 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.231 -6.130 10.265 18.587 hybrid contribution 0.390 1.038 0.337 1.159 sum -13.841 -5.092 10.602 18.164 Atomic orbital electron populations 1.21748 0.94894 1.02001 1.01943 1.21433 0.96482 0.95861 1.01899 1.21701 0.92037 0.98352 1.02888 1.22211 0.95546 0.92187 0.86325 0.91456 1.22559 0.88032 0.98069 1.00244 1.60090 1.07005 1.09752 1.54179 1.21482 0.93681 0.89662 0.97205 1.19354 0.90698 1.00305 0.91698 1.20255 1.39000 0.94136 0.95192 0.95237 1.25728 0.94908 1.02913 0.94605 1.70053 1.48052 1.36251 1.05444 0.85943 0.80125 0.80640 0.77044 1.19873 1.23293 1.15905 1.22817 1.02413 0.96694 0.97944 1.23013 1.02737 0.92611 1.05436 1.87836 1.42392 1.69112 1.31809 1.22529 0.87539 0.93564 0.98005 1.21680 1.02165 1.00087 0.96256 0.91966 0.93156 0.92187 0.92839 0.91606 0.89123 0.92073 0.92799 0.93261 0.84441 0.93807 0.95184 0.93190 0.87830 0.90690 0.91160 0.88334 0.92567 0.93363 0.94459 0.90441 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -2.23 5.87 30.59 0.18 -2.05 16 3 C -0.11 -2.33 4.93 30.59 0.15 -2.18 16 4 C 0.10 2.52 2.37 30.59 0.07 2.59 16 5 H 0.07 1.59 7.63 -2.39 -0.02 1.57 16 6 C 0.04 1.22 5.35 86.30 0.46 1.68 16 7 N -0.68 -24.66 4.86 -513.89 -2.50 -27.16 16 8 C 0.11 4.29 5.17 86.31 0.45 4.73 16 9 C -0.02 -0.86 1.01 -52.93 -0.05 -0.91 16 10 C -0.45 -25.47 9.27 25.60 0.24 -25.24 16 11 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 12 C 0.01 0.82 5.47 84.66 0.46 1.29 16 13 N -0.96 -61.59 13.96 21.45 0.30 -61.29 16 14 Si 0.94 45.87 24.92 68.60 1.71 47.58 16 15 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 17 H -0.24 -10.47 5.66 99.48 0.56 -9.91 16 18 C -0.16 -6.04 9.96 30.62 0.30 -5.73 16 19 C -0.20 -7.96 7.64 30.62 0.23 -7.73 16 20 O -0.39 -12.88 9.39 -148.98 -1.40 -14.28 16 21 C 0.06 1.91 6.35 71.98 0.46 2.36 16 22 C -0.14 -4.41 10.28 71.98 0.74 -3.67 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 1.19 7.69 -2.39 -0.02 1.17 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.34 11.06 8.68 -89.69 -0.78 10.28 16 33 H 0.04 1.92 6.49 -2.39 -0.02 1.90 16 34 H 0.03 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 36 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.07 3.04 7.31 -2.38 -0.02 3.02 16 39 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 40 H 0.06 1.47 7.98 -2.38 -0.02 1.45 16 41 H 0.05 1.83 6.79 -2.38 -0.02 1.82 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 44 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -67.57 347.61 2.53 -65.04 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.01 Total: 26.54 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 4.41 Total: -36.44 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -2.20 Total: -88.44 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.40 Total: -14.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.71 Total: 47.58 kcal Total: -67.57 2.53 -65.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707843987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.428 kcal (2) G-P(sol) polarization free energy of solvation -67.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds