Wall clock time and date at job start Mon Mar 30 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46917 * 2 1 4 4 C 1.52998 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46763 * 54.99883 * 4 3 2 6 6 C 1.53001 * 109.47114 * 174.99802 * 4 3 2 7 7 N 1.46904 * 109.46870 * 179.82212 * 6 4 3 8 8 C 1.46906 * 110.99535 * 88.03995 * 7 6 4 9 9 C 1.53002 * 109.46420 * 184.72529 * 8 7 6 10 10 C 1.50702 * 115.55218 * 304.50093 * 9 8 7 11 11 H 1.07999 * 119.99748 * 144.66926 * 10 9 8 12 12 C 1.37876 * 119.99778 * 324.66070 * 10 9 8 13 13 N 1.31517 * 120.00184 * 356.80422 * 12 10 9 14 14 Si 1.86806 * 119.99875 * 176.79671 * 12 10 9 15 15 H 1.48493 * 109.46993 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46678 * 120.00537 * 14 12 10 17 17 H 1.48500 * 109.46874 * 240.00441 * 14 12 10 18 18 C 1.53001 * 117.49401 * 158.83674 * 9 8 7 19 19 C 1.52994 * 117.49938 * 90.17553 * 9 8 7 20 20 O 1.42900 * 109.47374 * 295.00211 * 4 3 2 21 21 C 1.42895 * 114.00007 * 143.43814 * 20 4 3 22 22 C 1.53010 * 109.47174 * 185.31167 * 21 20 4 23 23 H 1.08995 * 109.47180 * 60.00557 * 1 2 3 24 24 H 1.09008 * 109.46551 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47412 * 299.99835 * 1 2 3 26 26 H 1.09001 * 109.47601 * 119.99390 * 2 1 3 27 27 H 1.08995 * 109.47412 * 240.00165 * 2 1 3 28 28 H 1.08995 * 109.47149 * 300.00061 * 3 2 1 29 29 H 1.08995 * 109.46945 * 59.99879 * 3 2 1 30 30 H 1.08999 * 109.47044 * 299.82540 * 6 4 3 31 31 H 1.08998 * 109.46604 * 59.82916 * 6 4 3 32 32 H 1.00898 * 110.99751 * 211.98819 * 7 6 4 33 33 H 1.08998 * 109.47366 * 304.72033 * 8 7 6 34 34 H 1.08993 * 109.47372 * 64.72847 * 8 7 6 35 35 H 0.97004 * 119.99744 * 185.00969 * 13 12 10 36 36 H 1.09002 * 117.50099 * 359.97438 * 18 9 8 37 37 H 1.09002 * 117.50233 * 145.02099 * 18 9 8 38 38 H 1.09004 * 117.50207 * 214.97478 * 19 9 8 39 39 H 1.09004 * 117.49915 * 359.97438 * 19 9 8 40 40 H 1.08995 * 109.47643 * 305.31167 * 21 20 4 41 41 H 1.08998 * 109.47364 * 65.31239 * 21 20 4 42 42 H 1.08998 * 109.46916 * 59.99798 * 22 21 20 43 43 H 1.08997 * 109.47082 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.46835 * 300.00494 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9336 0.8531 -0.8409 6 6 4.0799 2.8797 -0.1251 7 7 5.5490 2.8801 -0.1202 8 6 6.0799 2.7124 -1.4797 9 6 7.6047 2.5996 -1.4212 10 6 8.3147 3.7373 -0.7337 11 1 9.2026 3.5454 -0.1496 12 6 7.8308 5.0230 -0.8505 13 7 6.7868 5.2661 -1.6125 14 14 8.6579 6.4199 0.0739 15 1 9.8027 5.8869 0.8551 16 1 9.1490 7.4322 -0.8953 17 1 7.6797 7.0509 0.9959 18 6 8.3102 1.9409 -2.6082 19 6 8.2043 1.2000 -1.2729 20 8 4.0459 0.8735 1.2219 21 6 5.2283 0.0849 1.0737 22 6 5.5698 -0.5784 2.4096 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.7195 3.3128 -1.0582 31 1 3.7137 3.4699 0.7148 32 1 5.9089 3.7201 0.3074 33 1 5.6654 1.8068 -1.9225 34 1 5.8023 3.5738 -2.0870 35 1 6.4907 6.1791 -1.7526 36 1 7.6882 1.5874 -3.4306 37 1 9.2882 2.3299 -2.8916 38 1 9.1127 1.1019 -0.6784 39 1 7.5126 0.3594 -1.2166 40 1 5.0604 -0.6834 0.3191 41 1 6.0549 0.7242 0.7637 42 1 4.7432 -1.2177 2.7196 43 1 6.4714 -1.1802 2.2964 44 1 5.7376 0.1899 3.1642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707843989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:33 Heat of formation + Delta-G solvation = -43.059034 kcal Electronic energy + Delta-G solvation = -20291.255725 eV Core-core repulsion = 17436.744100 eV Total energy + Delta-G solvation = -2854.511624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.30625 -36.74087 -34.68550 -33.69091 -32.15739 -30.89930 -28.89087 -26.14947 -25.33625 -23.39969 -22.24445 -21.15606 -20.89060 -20.30942 -18.97558 -16.60244 -16.03004 -15.35609 -14.89803 -14.63227 -14.57385 -14.04154 -13.68530 -13.32751 -13.07870 -12.83314 -12.55348 -12.43428 -12.09723 -11.75064 -11.72137 -11.30076 -11.14146 -11.05845 -10.96780 -10.78827 -10.66748 -10.51186 -10.44147 -10.36313 -10.16468 -9.93343 -9.30519 -9.06737 -8.85489 -8.69182 -8.12514 -7.10749 -5.96046 -4.11738 3.23756 3.33427 3.37927 4.26653 4.34125 4.84399 4.99993 5.13354 5.21437 5.44786 5.52567 5.57193 5.65007 5.71438 5.74223 5.83475 5.88191 5.96987 5.97616 6.08525 6.13499 6.17975 6.25949 6.28823 6.39870 6.42615 6.46290 6.47283 6.62684 6.71169 6.75906 6.79950 6.89464 6.98652 7.26197 7.37408 7.60989 7.89712 7.99829 8.34432 8.45379 8.67214 8.91061 9.48699 10.93156 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.005938 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.597224 B = 4714.378239 C = 5073.459221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.119 4.119 4 C 0.101 3.899 5 H 0.052 0.948 6 C 0.041 3.959 7 N -0.670 5.670 8 C 0.101 3.899 9 C 0.059 3.941 10 C -0.470 4.470 11 H 0.059 0.941 12 C 0.065 3.935 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.283 1.283 18 C -0.210 4.210 19 C -0.204 4.204 20 O -0.377 6.377 21 C 0.058 3.942 22 C -0.146 4.146 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.354 0.646 33 H 0.016 0.984 34 H 0.082 0.918 35 H 0.259 0.741 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 -7.777 2.702 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.157 4.157 4 C 0.042 3.958 5 H 0.070 0.930 6 C -0.090 4.090 7 N -0.301 5.301 8 C -0.028 4.028 9 C 0.058 3.942 10 C -0.508 4.508 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.209 1.209 18 C -0.248 4.248 19 C -0.242 4.242 20 O -0.297 6.297 21 C -0.019 4.019 22 C -0.204 4.204 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.658 -8.245 3.039 12.336 hybrid contribution 0.470 1.535 -0.360 1.645 sum -8.188 -6.710 2.679 10.920 Atomic orbital electron populations 1.21773 0.96322 1.01140 1.01559 1.21463 0.95171 0.97122 1.02107 1.21729 0.94695 0.96997 1.02242 1.22074 0.92123 0.94450 0.87117 0.92979 1.22324 0.91556 0.95437 0.99675 1.60337 1.03425 1.45249 1.21098 1.21596 0.93171 0.98510 0.89549 1.18967 0.91366 0.89268 0.94559 1.20641 1.10162 0.90630 1.29335 0.92293 1.24988 0.94665 0.98704 0.95221 1.69864 1.24953 1.19694 1.38283 0.86505 0.79569 0.82075 0.79768 1.19730 1.21160 1.20880 1.22962 1.02359 1.08098 0.91414 1.22816 1.02526 0.97892 1.00917 1.87731 1.43244 1.67733 1.30981 1.22578 0.89578 0.93490 0.96219 1.21713 1.00555 1.00274 0.97831 0.93008 0.93150 0.92860 0.91439 0.92609 0.91270 0.91421 0.94686 0.92363 0.82619 0.96544 0.90048 0.93045 0.92011 0.90688 0.91075 0.91659 0.95483 0.89643 0.93240 0.91861 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.47 5.83 -26.73 -0.16 -1.63 16 3 C -0.12 -1.61 4.92 -26.73 -0.13 -1.74 16 4 C 0.10 1.67 2.42 -26.73 -0.06 1.61 16 5 H 0.05 0.90 7.10 -51.93 -0.37 0.53 16 6 C 0.04 0.76 5.63 -3.82 -0.02 0.74 16 7 N -0.67 -14.38 4.73 -113.77 -0.54 -14.92 16 8 C 0.10 2.31 4.55 -3.82 -0.02 2.30 16 9 C 0.06 1.43 2.12 -155.66 -0.33 1.10 16 10 C -0.47 -12.34 8.48 -34.44 -0.29 -12.63 16 11 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 12 C 0.07 1.68 4.49 -17.82 -0.08 1.60 16 13 N -0.89 -23.33 10.19 55.43 0.56 -22.77 16 14 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.21 -4.75 9.96 -26.69 -0.27 -5.02 16 19 C -0.20 -4.46 9.93 -26.69 -0.27 -4.72 16 20 O -0.38 -6.61 9.44 -35.23 -0.33 -6.94 16 21 C 0.06 0.97 6.32 37.16 0.23 1.20 16 22 C -0.15 -2.08 10.28 37.16 0.38 -1.69 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.66 7.81 -51.93 -0.41 0.26 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.35 8.43 7.07 -39.29 -0.28 8.16 16 33 H 0.02 0.36 7.52 -51.93 -0.39 -0.03 16 34 H 0.08 2.09 5.84 -51.93 -0.30 1.78 16 35 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.03 0.43 7.98 -51.93 -0.41 0.02 16 41 H 0.09 1.66 6.76 -51.93 -0.35 1.31 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -25.77 348.08 -9.10 -34.87 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -8.38 Total: 9.14 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -0.64 Total: -20.04 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.03 Total: -37.69 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.33 Total: -6.94 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -25.77 -9.10 -34.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707843989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.188 kcal (2) G-P(sol) polarization free energy of solvation -25.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds