Wall clock time and date at job start Mon Mar 30 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46917 * 2 1 4 4 C 1.52998 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46763 * 54.99883 * 4 3 2 6 6 C 1.53001 * 109.47114 * 174.99802 * 4 3 2 7 7 N 1.46904 * 109.46870 * 179.82212 * 6 4 3 8 8 C 1.46906 * 110.99535 * 88.03995 * 7 6 4 9 9 C 1.53002 * 109.46420 * 184.72529 * 8 7 6 10 10 C 1.50702 * 115.55218 * 304.50093 * 9 8 7 11 11 H 1.07999 * 119.99748 * 144.66926 * 10 9 8 12 12 C 1.37876 * 119.99778 * 324.66070 * 10 9 8 13 13 N 1.31517 * 120.00184 * 356.80422 * 12 10 9 14 14 Si 1.86806 * 119.99875 * 176.79671 * 12 10 9 15 15 H 1.48493 * 109.46993 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46678 * 120.00537 * 14 12 10 17 17 H 1.48500 * 109.46874 * 240.00441 * 14 12 10 18 18 C 1.53001 * 117.49401 * 158.83674 * 9 8 7 19 19 C 1.52994 * 117.49938 * 90.17553 * 9 8 7 20 20 O 1.42900 * 109.47374 * 295.00211 * 4 3 2 21 21 C 1.42895 * 114.00007 * 143.43814 * 20 4 3 22 22 C 1.53010 * 109.47174 * 185.31167 * 21 20 4 23 23 H 1.08995 * 109.47180 * 60.00557 * 1 2 3 24 24 H 1.09008 * 109.46551 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47412 * 299.99835 * 1 2 3 26 26 H 1.09001 * 109.47601 * 119.99390 * 2 1 3 27 27 H 1.08995 * 109.47412 * 240.00165 * 2 1 3 28 28 H 1.08995 * 109.47149 * 300.00061 * 3 2 1 29 29 H 1.08995 * 109.46945 * 59.99879 * 3 2 1 30 30 H 1.08999 * 109.47044 * 299.82540 * 6 4 3 31 31 H 1.08998 * 109.46604 * 59.82916 * 6 4 3 32 32 H 1.00898 * 110.99751 * 211.98819 * 7 6 4 33 33 H 1.08998 * 109.47366 * 304.72033 * 8 7 6 34 34 H 1.08993 * 109.47372 * 64.72847 * 8 7 6 35 35 H 0.97004 * 119.99744 * 185.00969 * 13 12 10 36 36 H 1.09002 * 117.50099 * 359.97438 * 18 9 8 37 37 H 1.09002 * 117.50233 * 145.02099 * 18 9 8 38 38 H 1.09004 * 117.50207 * 214.97478 * 19 9 8 39 39 H 1.09004 * 117.49915 * 359.97438 * 19 9 8 40 40 H 1.08995 * 109.47643 * 305.31167 * 21 20 4 41 41 H 1.08998 * 109.47364 * 65.31239 * 21 20 4 42 42 H 1.08998 * 109.46916 * 59.99798 * 22 21 20 43 43 H 1.08997 * 109.47082 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.46835 * 300.00494 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9336 0.8531 -0.8409 6 6 4.0799 2.8797 -0.1251 7 7 5.5490 2.8801 -0.1202 8 6 6.0799 2.7124 -1.4797 9 6 7.6047 2.5996 -1.4212 10 6 8.3147 3.7373 -0.7337 11 1 9.2026 3.5454 -0.1496 12 6 7.8308 5.0230 -0.8505 13 7 6.7868 5.2661 -1.6125 14 14 8.6579 6.4199 0.0739 15 1 9.8027 5.8869 0.8551 16 1 9.1490 7.4322 -0.8953 17 1 7.6797 7.0509 0.9959 18 6 8.3102 1.9409 -2.6082 19 6 8.2043 1.2000 -1.2729 20 8 4.0459 0.8735 1.2219 21 6 5.2283 0.0849 1.0737 22 6 5.5698 -0.5784 2.4096 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.7195 3.3128 -1.0582 31 1 3.7137 3.4699 0.7148 32 1 5.9089 3.7201 0.3074 33 1 5.6654 1.8068 -1.9225 34 1 5.8023 3.5738 -2.0870 35 1 6.4907 6.1791 -1.7526 36 1 7.6882 1.5874 -3.4306 37 1 9.2882 2.3299 -2.8916 38 1 9.1127 1.1019 -0.6784 39 1 7.5126 0.3594 -1.2166 40 1 5.0604 -0.6834 0.3191 41 1 6.0549 0.7242 0.7637 42 1 4.7432 -1.2177 2.7196 43 1 6.4714 -1.1802 2.2964 44 1 5.7376 0.1899 3.1642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707843989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:32 Heat of formation + Delta-G solvation = -55.613600 kcal Electronic energy + Delta-G solvation = -20291.800132 eV Core-core repulsion = 17436.744100 eV Total energy + Delta-G solvation = -2855.056031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72187 -38.49132 -35.87458 -35.18814 -34.11539 -32.14031 -30.14488 -27.81963 -27.11049 -24.84128 -23.52282 -22.89628 -22.00043 -21.73688 -20.85628 -18.27731 -17.62073 -16.90262 -16.50917 -16.16724 -15.77429 -15.59674 -15.31153 -14.69928 -14.45193 -14.30746 -13.94712 -13.79751 -13.49053 -13.09135 -12.95638 -12.88353 -12.75468 -12.69093 -12.35702 -12.25536 -12.20111 -11.98733 -11.89451 -11.62447 -11.52539 -11.35131 -11.15076 -10.92880 -10.57591 -10.33719 -10.00158 -8.83325 -7.91405 -6.14828 1.40261 1.45794 1.54718 2.43028 2.98107 3.03629 3.50256 3.76286 4.03142 4.17063 4.25808 4.32335 4.33664 4.38692 4.53975 4.58740 4.63043 4.67608 4.75542 4.77588 4.83308 4.89496 4.93551 4.99826 5.01411 5.03691 5.09724 5.14710 5.17759 5.28985 5.35615 5.38577 5.41228 5.45363 5.51164 5.57645 5.63467 6.03736 6.46871 6.52064 6.65045 6.78398 6.95894 7.47259 8.93820 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.005938 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.597224 B = 4714.378239 C = 5073.459221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.113 4.113 4 C 0.107 3.893 5 H 0.044 0.956 6 C 0.041 3.959 7 N -0.667 5.667 8 C 0.117 3.883 9 C 0.029 3.971 10 C -0.488 4.488 11 H 0.045 0.955 12 C 0.033 3.967 13 N -0.903 5.903 14 Si 0.947 3.053 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.280 1.280 18 C -0.208 4.208 19 C -0.184 4.184 20 O -0.386 6.386 21 C 0.057 3.943 22 C -0.141 4.141 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.338 0.662 33 H 0.023 0.977 34 H 0.055 0.945 35 H 0.259 0.741 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 -8.665 3.080 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.151 4.151 4 C 0.048 3.952 5 H 0.062 0.938 6 C -0.090 4.090 7 N -0.296 5.296 8 C -0.012 4.012 9 C 0.028 3.972 10 C -0.526 4.526 11 H 0.063 0.937 12 C -0.166 4.166 13 N -0.542 5.542 14 Si 0.774 3.226 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.206 1.206 18 C -0.247 4.247 19 C -0.221 4.221 20 O -0.305 6.305 21 C -0.020 4.020 22 C -0.198 4.198 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.156 0.844 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.515 -9.151 3.414 13.636 hybrid contribution 0.748 1.800 -0.489 2.009 sum -8.767 -7.351 2.925 11.809 Atomic orbital electron populations 1.21741 0.94583 1.02092 1.02017 1.21418 0.96654 0.95735 1.01677 1.21708 0.92293 0.98354 1.02752 1.22061 0.93981 0.92558 0.86625 0.93782 1.22437 0.89850 0.97221 0.99488 1.60385 1.05064 1.44106 1.20084 1.21315 0.92642 0.97437 0.89800 1.19114 0.92024 0.90117 0.95906 1.20763 1.10143 0.91845 1.29834 0.93658 1.25494 0.95145 1.00272 0.95736 1.69989 1.25503 1.19880 1.38859 0.85671 0.78642 0.79650 0.78655 1.19901 1.21121 1.20565 1.22963 1.02003 1.07865 0.91873 1.22773 1.02359 0.97052 0.99955 1.87734 1.43428 1.67894 1.31474 1.22582 0.88354 0.93108 0.97925 1.21688 1.01826 1.00201 0.96070 0.92373 0.91996 0.92601 0.92348 0.92568 0.90286 0.91358 0.95074 0.92216 0.84444 0.95910 0.92760 0.93151 0.90752 0.91313 0.91061 0.90080 0.94674 0.92504 0.91846 0.90279 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.62 5.83 30.60 0.18 -2.44 16 3 C -0.11 -2.89 4.92 30.60 0.15 -2.74 16 4 C 0.11 3.43 2.42 30.59 0.07 3.50 16 5 H 0.04 1.49 7.10 -2.39 -0.02 1.47 16 6 C 0.04 1.50 5.63 86.30 0.49 1.99 16 7 N -0.67 -28.85 4.73 -513.87 -2.43 -31.28 16 8 C 0.12 5.42 4.55 86.30 0.39 5.81 16 9 C 0.03 1.41 2.12 -52.93 -0.11 1.29 16 10 C -0.49 -25.84 8.48 25.60 0.22 -25.63 16 11 H 0.05 2.46 7.82 -2.91 -0.02 2.44 16 12 C 0.03 1.70 4.49 84.65 0.38 2.08 16 13 N -0.90 -47.79 10.19 21.45 0.22 -47.57 16 14 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 C -0.21 -9.31 9.96 30.62 0.30 -9.01 16 19 C -0.18 -7.87 9.93 30.62 0.30 -7.57 16 20 O -0.39 -13.14 9.44 -148.98 -1.41 -14.54 16 21 C 0.06 1.84 6.32 71.99 0.45 2.30 16 22 C -0.14 -3.75 10.28 71.99 0.74 -3.01 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.41 7.82 -2.39 -0.02 1.39 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.03 1.17 7.81 -2.39 -0.02 1.16 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.34 16.37 7.07 -89.70 -0.63 15.73 16 33 H 0.02 1.00 7.52 -2.39 -0.02 0.98 16 34 H 0.05 2.82 5.84 -2.39 -0.01 2.81 16 35 H 0.26 13.22 8.32 -92.71 -0.77 12.45 16 36 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 40 H 0.03 1.07 7.98 -2.39 -0.02 1.05 16 41 H 0.06 2.18 6.76 -2.39 -0.02 2.16 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -53.94 348.08 2.99 -50.95 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.30 Total: 33.60 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 4.28 Total: -35.32 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.21 Total: -78.85 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.41 Total: -14.54 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -53.94 2.99 -50.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707843989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.664 kcal (2) G-P(sol) polarization free energy of solvation -53.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds