Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 C 1.53003 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.54351 * 304.89552 * 4 3 2 6 6 C 1.53094 * 109.50532 * 184.78244 * 4 3 2 7 7 N 1.47014 * 109.29450 * 183.24140 * 6 4 3 8 8 C 1.46898 * 111.03763 * 182.34845 * 7 6 4 9 9 C 1.52991 * 109.47292 * 302.38390 * 8 7 6 10 10 C 1.53000 * 109.47369 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47496 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47340 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99797 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00029 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99953 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00064 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47302 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47607 * 119.99750 * 16 14 12 19 19 H 1.48504 * 109.46778 * 239.99870 * 16 14 12 20 20 C 1.47018 * 110.75310 * 58.54598 * 7 6 4 21 21 C 1.53095 * 109.29409 * 301.45410 * 20 7 6 22 22 O 1.43015 * 109.50687 * 64.99991 * 4 3 2 23 23 H 1.08999 * 109.47288 * 60.00374 * 1 2 3 24 24 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47014 * 299.99837 * 1 2 3 26 26 H 1.09001 * 109.46847 * 239.99931 * 2 1 3 27 27 H 1.08998 * 109.47296 * 120.00181 * 2 1 3 28 28 H 1.08993 * 109.47144 * 60.00242 * 3 2 1 29 29 H 1.08999 * 109.46835 * 299.99904 * 3 2 1 30 30 H 1.09006 * 109.50944 * 303.15050 * 6 4 3 31 31 H 1.08996 * 109.51243 * 63.23829 * 6 4 3 32 32 H 1.08999 * 109.47135 * 62.39066 * 8 7 6 33 33 H 1.09004 * 109.46940 * 182.38160 * 8 7 6 34 34 H 1.08999 * 109.47582 * 300.00401 * 9 8 7 35 35 H 1.09005 * 109.46792 * 60.00034 * 9 8 7 36 36 H 1.09002 * 109.46911 * 300.00259 * 10 9 8 37 37 H 1.08994 * 109.46836 * 59.99828 * 10 9 8 38 38 H 1.09002 * 109.46834 * 299.99794 * 11 10 9 39 39 H 1.09004 * 109.47671 * 59.99774 * 11 10 9 40 40 H 0.97004 * 120.00231 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.50864 * 181.49645 * 20 7 6 42 42 H 1.09003 * 109.50425 * 61.41284 * 20 7 6 43 43 H 1.08994 * 109.50879 * 176.75852 * 21 20 7 44 44 H 1.08995 * 109.50640 * 296.89211 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9350 0.8547 0.8416 6 6 4.0812 2.8805 0.1197 7 7 5.5492 2.8824 0.0405 8 6 6.0846 4.2401 0.2078 9 6 5.4871 5.1591 -0.8595 10 6 6.0442 6.5733 -0.6849 11 6 5.4462 7.4925 -1.7518 12 6 5.9955 8.8853 -1.5802 13 1 6.7002 9.0941 -0.7889 14 6 5.5982 9.8929 -2.4333 15 7 4.7404 9.6385 -3.3971 16 14 6.2796 11.6192 -2.2210 17 1 7.2203 11.6423 -1.0722 18 1 6.9967 12.0239 -3.4567 19 1 5.1628 12.5640 -1.9648 20 6 6.0034 2.2893 -1.2258 21 6 5.4729 0.8572 -1.3326 22 8 4.0471 0.8730 -1.2227 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.6728 3.4813 -0.6931 31 1 3.7671 3.2998 1.0755 32 1 5.8230 4.6145 1.1975 33 1 7.1694 4.2184 0.1027 34 1 5.7487 4.7847 -1.8492 35 1 4.4024 5.1807 -0.7544 36 1 5.7821 6.9474 0.3048 37 1 7.1289 6.5520 -0.7897 38 1 5.7080 7.1185 -2.7417 39 1 4.3615 7.5138 -1.6467 40 1 4.4612 10.3474 -3.9976 41 1 7.0930 2.2767 -1.2517 42 1 5.6263 2.8804 -2.0604 43 1 5.7591 0.4339 -2.2953 44 1 5.8932 0.2526 -0.5290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709000115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -78.566700 kcal Electronic energy + Delta-G solvation = -19276.842341 eV Core-core repulsion = 16420.790989 eV Total energy + Delta-G solvation = -2856.051352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88568 -36.74715 -35.07493 -34.03432 -32.08274 -31.37546 -29.20670 -27.44871 -25.98551 -24.05184 -23.12622 -21.97273 -21.08135 -20.35551 -19.53499 -16.72293 -16.29369 -16.16079 -15.44713 -15.05569 -14.66382 -14.54523 -14.47710 -14.39619 -13.77271 -13.36292 -12.93378 -12.58901 -12.29246 -12.17142 -11.86196 -11.78283 -11.69292 -11.52888 -11.20849 -11.06791 -10.93554 -10.79937 -10.58370 -10.53612 -10.37997 -10.31855 -9.65491 -9.61645 -9.41296 -9.06622 -8.34774 -8.14960 -5.99301 -4.01768 3.30731 3.38038 3.42373 3.67000 3.88241 4.46193 4.58160 4.83201 4.90256 4.94344 5.07105 5.13350 5.15466 5.22903 5.36065 5.41034 5.45386 5.48373 5.52181 5.54106 5.68899 5.71645 5.77337 5.82333 5.84657 5.94905 5.97871 6.07523 6.12941 6.20311 6.26252 6.48197 6.71758 6.89929 7.01420 7.02593 7.15486 7.17165 7.68785 7.83464 8.01114 8.44146 9.05928 9.62353 11.12036 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.003488 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.947499 B = 8026.188446 C = 8574.703241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.095 3.905 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.538 5.538 8 C 0.054 3.946 9 C -0.155 4.155 10 C -0.106 4.106 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.012 3.988 21 C 0.066 3.934 22 O -0.381 6.381 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 -19.929 7.202 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C 0.037 3.963 5 H 0.081 0.919 6 C -0.111 4.111 7 N -0.261 5.261 8 C -0.074 4.074 9 C -0.193 4.193 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.117 4.117 21 C -0.011 4.011 22 O -0.300 6.300 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.050 -20.219 7.313 21.717 hybrid contribution 0.265 1.767 -0.506 1.857 sum -2.786 -18.452 6.808 19.864 Atomic orbital electron populations 1.21785 0.95988 1.01443 1.01823 1.21453 0.95504 0.96467 1.02333 1.21635 0.92596 0.97827 1.03045 1.22189 0.94232 0.92698 0.87178 0.91914 1.22836 0.88535 0.97188 1.02498 1.62514 1.08766 1.21432 1.33391 1.22311 0.99624 0.85962 0.99483 1.22278 1.00692 0.97574 0.98805 1.21540 0.99400 0.92794 1.00662 1.19096 0.95936 0.93341 0.93248 1.21321 1.25798 0.94303 1.14371 0.92682 1.25044 0.95189 0.99046 0.95306 1.69980 1.32819 1.32844 1.17924 0.86546 0.78876 0.84654 0.77997 1.19738 1.21012 1.21010 1.22814 1.01007 0.96050 0.91807 1.22620 0.81104 0.95449 1.01903 1.87967 1.20923 1.81981 1.39155 0.92668 0.92911 0.92852 0.91283 0.92327 0.90479 0.90960 0.92937 0.89891 0.90716 0.90786 0.92513 0.92333 0.93435 0.93468 0.96866 0.96841 0.93091 0.89831 0.93167 0.88690 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.07 5.83 -26.73 -0.16 -1.23 16 3 C -0.11 -1.12 4.93 -26.73 -0.13 -1.25 16 4 C 0.09 1.08 2.81 -26.68 -0.07 1.01 16 5 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 6 C 0.02 0.23 4.42 -3.71 -0.02 0.21 16 7 N -0.54 -7.11 4.94 -234.31 -1.16 -8.27 16 8 C 0.05 0.76 5.38 -3.83 -0.02 0.74 16 9 C -0.15 -2.67 4.50 -26.74 -0.12 -2.79 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.01 0.14 5.33 -3.71 -0.02 0.12 16 21 C 0.07 0.73 7.01 37.21 0.26 0.99 16 22 O -0.38 -4.83 10.01 -35.23 -0.35 -5.18 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.06 1.01 6.61 -51.93 -0.34 0.67 16 35 H 0.06 1.04 6.42 -51.93 -0.33 0.71 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 0.94 8.12 -51.93 -0.42 0.51 16 42 H 0.05 0.70 6.59 -51.93 -0.34 0.36 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -30.89 342.14 -9.72 -40.61 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -8.48 Total: -3.71 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -0.60 Total: -18.81 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.42 Total: -35.00 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.35 Total: -5.18 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.89 -9.72 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.961 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds