Wall clock time and date at job start Mon Mar 30 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 C 1.53003 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.54351 * 304.89552 * 4 3 2 6 6 C 1.53094 * 109.50532 * 184.78244 * 4 3 2 7 7 N 1.47014 * 109.29450 * 183.24140 * 6 4 3 8 8 C 1.46898 * 111.03763 * 182.34845 * 7 6 4 9 9 C 1.52991 * 109.47292 * 302.38390 * 8 7 6 10 10 C 1.53000 * 109.47369 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47496 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47340 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99797 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00029 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99953 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00064 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47302 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47607 * 119.99750 * 16 14 12 19 19 H 1.48504 * 109.46778 * 239.99870 * 16 14 12 20 20 C 1.47018 * 110.75310 * 58.54598 * 7 6 4 21 21 C 1.53095 * 109.29409 * 301.45410 * 20 7 6 22 22 O 1.43015 * 109.50687 * 64.99991 * 4 3 2 23 23 H 1.08999 * 109.47288 * 60.00374 * 1 2 3 24 24 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47014 * 299.99837 * 1 2 3 26 26 H 1.09001 * 109.46847 * 239.99931 * 2 1 3 27 27 H 1.08998 * 109.47296 * 120.00181 * 2 1 3 28 28 H 1.08993 * 109.47144 * 60.00242 * 3 2 1 29 29 H 1.08999 * 109.46835 * 299.99904 * 3 2 1 30 30 H 1.09006 * 109.50944 * 303.15050 * 6 4 3 31 31 H 1.08996 * 109.51243 * 63.23829 * 6 4 3 32 32 H 1.08999 * 109.47135 * 62.39066 * 8 7 6 33 33 H 1.09004 * 109.46940 * 182.38160 * 8 7 6 34 34 H 1.08999 * 109.47582 * 300.00401 * 9 8 7 35 35 H 1.09005 * 109.46792 * 60.00034 * 9 8 7 36 36 H 1.09002 * 109.46911 * 300.00259 * 10 9 8 37 37 H 1.08994 * 109.46836 * 59.99828 * 10 9 8 38 38 H 1.09002 * 109.46834 * 299.99794 * 11 10 9 39 39 H 1.09004 * 109.47671 * 59.99774 * 11 10 9 40 40 H 0.97004 * 120.00231 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.50864 * 181.49645 * 20 7 6 42 42 H 1.09003 * 109.50425 * 61.41284 * 20 7 6 43 43 H 1.08994 * 109.50879 * 176.75852 * 21 20 7 44 44 H 1.08995 * 109.50640 * 296.89211 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9350 0.8547 0.8416 6 6 4.0812 2.8805 0.1197 7 7 5.5492 2.8824 0.0405 8 6 6.0846 4.2401 0.2078 9 6 5.4871 5.1591 -0.8595 10 6 6.0442 6.5733 -0.6849 11 6 5.4462 7.4925 -1.7518 12 6 5.9955 8.8853 -1.5802 13 1 6.7002 9.0941 -0.7889 14 6 5.5982 9.8929 -2.4333 15 7 4.7404 9.6385 -3.3971 16 14 6.2796 11.6192 -2.2210 17 1 7.2203 11.6423 -1.0722 18 1 6.9967 12.0239 -3.4567 19 1 5.1628 12.5640 -1.9648 20 6 6.0034 2.2893 -1.2258 21 6 5.4729 0.8572 -1.3326 22 8 4.0471 0.8730 -1.2227 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.6728 3.4813 -0.6931 31 1 3.7671 3.2998 1.0755 32 1 5.8230 4.6145 1.1975 33 1 7.1694 4.2184 0.1027 34 1 5.7487 4.7847 -1.8492 35 1 4.4024 5.1807 -0.7544 36 1 5.7821 6.9474 0.3048 37 1 7.1289 6.5520 -0.7897 38 1 5.7080 7.1185 -2.7417 39 1 4.3615 7.5138 -1.6467 40 1 4.4612 10.3474 -3.9976 41 1 7.0930 2.2767 -1.2517 42 1 5.6263 2.8804 -2.0604 43 1 5.7591 0.4339 -2.2953 44 1 5.8932 0.2526 -0.5290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709000115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:23 Heat of formation + Delta-G solvation = -97.366212 kcal Electronic energy + Delta-G solvation = -19277.657549 eV Core-core repulsion = 16420.790989 eV Total energy + Delta-G solvation = -2856.866560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87351 -37.91473 -36.03650 -35.71228 -33.98062 -32.22193 -30.71472 -28.67645 -27.22843 -25.60784 -24.19824 -23.13835 -22.17449 -21.84376 -20.68049 -18.47510 -17.65322 -17.21477 -16.57005 -16.50012 -15.98016 -15.85802 -15.60856 -15.41616 -14.93791 -14.43434 -14.26988 -13.89476 -13.63397 -13.58068 -13.35988 -12.99517 -12.86921 -12.65267 -12.43901 -12.40898 -12.28176 -12.14759 -11.89493 -11.80421 -11.54275 -11.46198 -11.32329 -11.30916 -11.07788 -10.60066 -10.56868 -9.32868 -8.23229 -6.35523 1.37676 1.38192 1.51909 2.38340 2.75823 2.89300 3.09343 3.70939 3.92168 3.95406 4.03306 4.10706 4.18404 4.20192 4.25214 4.36742 4.40727 4.43605 4.60013 4.65360 4.68367 4.73779 4.78675 4.85199 4.89539 4.94273 4.97803 5.02400 5.08546 5.11944 5.23278 5.28086 5.28220 5.38579 5.49701 5.49742 5.70076 5.81780 5.93859 5.95829 6.21295 6.25661 6.82217 7.34376 8.88787 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.003488 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.947499 B = 8026.188446 C = 8574.703241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.098 3.902 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.533 5.533 8 C 0.063 3.937 9 C -0.142 4.142 10 C -0.093 4.093 11 C 0.023 3.977 12 C -0.544 4.544 13 H 0.062 0.938 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.009 3.991 21 C 0.066 3.934 22 O -0.398 6.398 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.053 0.947 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.264 0.736 41 H 0.098 0.902 42 H 0.027 0.973 43 H 0.112 0.888 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -20.313 8.716 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.150 4.150 4 C 0.040 3.960 5 H 0.090 0.910 6 C -0.112 4.112 7 N -0.256 5.256 8 C -0.065 4.065 9 C -0.181 4.181 10 C -0.131 4.131 11 C -0.014 4.014 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.119 4.119 21 C -0.010 4.010 22 O -0.318 6.318 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.045 0.955 43 H 0.130 0.870 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.199 -20.623 8.836 22.543 hybrid contribution -0.023 1.865 -1.017 2.124 sum -2.223 -18.758 7.819 20.443 Atomic orbital electron populations 1.21777 0.95190 1.02086 1.01874 1.21411 0.96179 0.95569 1.02177 1.21654 0.91744 0.98605 1.02954 1.22247 0.94990 0.91667 0.87098 0.90954 1.22893 0.88218 0.98001 1.02057 1.62582 1.09004 1.20337 1.33704 1.22218 0.99994 0.85803 0.98471 1.22131 1.00122 0.96200 0.99660 1.21351 0.99442 0.93571 0.98764 1.19022 0.94419 0.94205 0.93728 1.21763 1.26143 0.95527 1.14737 0.91996 1.26059 0.95340 1.04004 0.94767 1.70118 1.34085 1.34552 1.18856 0.85349 0.78400 0.78551 0.78456 1.18372 1.20293 1.20277 1.22902 1.01881 0.96616 0.90518 1.22747 0.80306 0.94574 1.03402 1.87958 1.21955 1.82008 1.39866 0.93295 0.91992 0.92140 0.92507 0.91349 0.89124 0.92501 0.95334 0.88908 0.89783 0.89741 0.93592 0.93307 0.92724 0.92782 0.99741 0.99655 0.92761 0.88410 0.95469 0.87044 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.12 -1.93 5.83 30.60 0.18 -1.75 16 3 C -0.11 -2.13 4.93 30.60 0.15 -1.98 16 4 C 0.10 2.12 2.81 30.63 0.09 2.21 16 5 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 6 C 0.02 0.41 4.42 86.31 0.38 0.79 16 7 N -0.53 -13.42 4.94 -895.22 -4.42 -17.84 16 8 C 0.06 1.71 5.38 86.30 0.46 2.17 16 9 C -0.14 -4.94 4.50 30.59 0.14 -4.81 16 10 C -0.09 -3.89 5.15 30.59 0.16 -3.73 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -31.81 9.11 25.60 0.23 -31.57 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 15 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 16 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 C 0.01 0.22 5.33 86.31 0.46 0.68 16 21 C 0.07 1.36 7.01 72.01 0.50 1.86 16 22 O -0.40 -9.78 10.01 -148.98 -1.49 -11.27 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 0.84 6.40 -2.38 -0.02 0.83 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.14 8.11 -2.38 -0.02 2.12 16 34 H 0.05 1.68 6.61 -2.39 -0.02 1.67 16 35 H 0.05 1.78 6.42 -2.38 -0.02 1.77 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.10 2.03 8.12 -2.39 -0.02 2.01 16 42 H 0.03 0.77 6.59 -2.39 -0.02 0.76 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -66.68 342.14 1.40 -65.28 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.92 Total: 11.02 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 4.08 Total: -35.99 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -4.13 Total: -76.01 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.49 Total: -11.27 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.68 1.40 -65.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.088 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds