Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47415 * 2 1 4 4 C 1.52995 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.50701 * 55.08814 * 4 3 2 6 6 C 1.53102 * 109.50356 * 175.22141 * 4 3 2 7 7 N 1.47014 * 109.25736 * 176.78436 * 6 4 3 8 8 C 1.46893 * 111.00172 * 177.60562 * 7 6 4 9 9 C 1.53001 * 109.47408 * 189.68090 * 8 7 6 10 10 C 1.53000 * 109.47355 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47012 * 110.75453 * 301.38673 * 7 6 4 21 21 C 1.53094 * 109.26204 * 58.61164 * 20 7 6 22 22 O 1.43014 * 109.25754 * 303.15679 * 21 20 7 23 23 H 1.08999 * 109.46959 * 299.99641 * 1 2 3 24 24 H 1.09006 * 109.47196 * 59.99499 * 1 2 3 25 25 H 1.09003 * 109.47668 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46959 * 240.00359 * 2 1 3 27 27 H 1.08998 * 109.47290 * 120.00812 * 2 1 3 28 28 H 1.08999 * 109.46764 * 60.00239 * 3 2 1 29 29 H 1.08992 * 109.47163 * 300.00447 * 3 2 1 30 30 H 1.08999 * 109.50675 * 56.85110 * 6 4 3 31 31 H 1.08996 * 109.50531 * 296.71430 * 6 4 3 32 32 H 1.08994 * 109.47037 * 69.68025 * 8 7 6 33 33 H 1.09003 * 109.47550 * 309.68177 * 8 7 6 34 34 H 1.09002 * 109.46926 * 60.00242 * 9 8 7 35 35 H 1.08992 * 109.47494 * 300.00236 * 9 8 7 36 36 H 1.09002 * 109.46807 * 60.00291 * 10 9 8 37 37 H 1.08998 * 109.47285 * 299.99893 * 10 9 8 38 38 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 39 39 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 40 40 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 41 41 H 1.09003 * 109.51021 * 178.55092 * 20 7 6 42 42 H 1.09007 * 109.50436 * 298.67644 * 20 7 6 43 43 H 1.09006 * 109.50665 * 63.08846 * 21 20 7 44 44 H 1.08996 * 109.50900 * 183.17348 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9342 0.8542 -0.8416 6 6 4.0813 2.8805 -0.1196 7 7 5.5493 2.8813 -0.0409 8 6 6.0848 4.2388 -0.2092 9 6 7.6055 4.1718 -0.3633 10 6 8.1632 5.5856 -0.5393 11 6 9.6840 5.5186 -0.6928 12 6 10.2332 6.9112 -0.8654 13 1 9.5646 7.7594 -0.8653 14 6 11.5895 7.1027 -1.0236 15 7 12.4038 6.0700 -1.0233 16 14 12.2703 8.8289 -1.2384 17 1 12.3052 9.1711 -2.6830 18 1 11.4014 9.7965 -0.5213 19 1 13.6455 8.8914 -0.6815 20 6 6.0035 2.2891 1.2257 21 6 5.4729 0.8570 1.3325 22 8 4.0471 0.8728 1.2227 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.6729 3.4811 0.6932 31 1 3.7678 3.2994 -1.0757 32 1 5.8343 4.8391 0.6653 33 1 5.6491 4.6936 -1.0989 34 1 7.8559 3.5714 -1.2380 35 1 8.0412 3.7171 0.5262 36 1 7.9127 6.1863 0.3351 37 1 7.7275 6.0399 -1.4292 38 1 9.9348 4.9177 -1.5670 39 1 10.1193 5.0644 0.1974 40 1 13.3579 6.2047 -1.1350 41 1 7.0931 2.2764 1.2516 42 1 5.6259 2.8803 2.0600 43 1 5.8931 0.2522 0.5288 44 1 5.7598 0.4333 2.2949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709000117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = -79.607441 kcal Electronic energy + Delta-G solvation = -18954.321996 eV Core-core repulsion = 16098.225514 eV Total energy + Delta-G solvation = -2856.096482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84466 -36.63203 -35.12643 -34.15927 -32.21443 -31.41387 -29.23551 -27.72707 -25.77236 -24.02848 -23.34202 -21.58412 -20.92901 -20.30675 -19.97998 -16.71680 -16.33506 -16.20054 -15.46504 -15.15951 -14.83121 -14.74092 -14.47922 -14.13876 -13.93439 -13.44299 -13.00609 -12.55954 -12.38509 -12.23174 -11.95133 -11.72086 -11.60186 -11.55057 -11.19352 -11.12336 -10.95862 -10.89085 -10.63160 -10.48999 -10.41944 -10.30786 -9.71928 -9.59856 -9.23217 -8.99262 -8.36170 -8.31959 -5.97400 -3.99552 3.32966 3.38954 3.42428 3.60528 3.78721 4.47878 4.49192 4.74106 4.81915 4.91447 4.99930 5.02569 5.10817 5.17659 5.34125 5.37962 5.40391 5.45797 5.46596 5.55543 5.58739 5.62646 5.73819 5.76857 5.85770 5.87773 5.88894 6.03617 6.11082 6.13911 6.23163 6.50897 6.80169 6.95296 6.98479 7.02967 7.10772 7.22697 7.71390 7.87163 8.03631 8.46519 9.07897 9.64192 11.13950 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.058900 B = 0.002848 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.271670 B = 9827.686868 C =10119.638215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.094 3.906 5 H 0.066 0.934 6 C 0.023 3.977 7 N -0.538 5.538 8 C 0.056 3.944 9 C -0.113 4.113 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.274 1.274 19 H -0.287 1.287 20 C 0.014 3.986 21 C 0.065 3.935 22 O -0.383 6.383 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.093 0.907 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.876 -11.696 3.080 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.149 4.149 4 C 0.036 3.964 5 H 0.084 0.916 6 C -0.105 4.105 7 N -0.263 5.263 8 C -0.071 4.071 9 C -0.151 4.151 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.114 4.114 21 C -0.012 4.012 22 O -0.302 6.302 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.636 -12.097 2.829 24.088 hybrid contribution 0.466 1.649 0.336 1.746 sum -20.170 -10.449 3.164 22.935 Atomic orbital electron populations 1.21782 0.96005 1.01529 1.01670 1.21461 0.95456 0.96435 1.02535 1.21620 0.92643 0.97903 1.02747 1.22188 0.94109 0.92644 0.87492 0.91588 1.22788 0.88618 0.97318 1.01813 1.62253 1.07960 1.22253 1.33795 1.22260 0.97166 0.87251 1.00389 1.21668 0.92106 0.99431 1.01905 1.21599 0.99698 0.93466 0.99962 1.19087 0.88572 0.96865 0.97037 1.21287 0.92125 0.93124 1.49278 0.92786 1.25042 0.97252 0.96788 0.95508 1.69971 1.03425 1.29581 1.50577 0.86605 0.78263 0.84904 0.78286 1.20672 1.19931 1.21239 1.22847 1.01996 0.95925 0.90653 1.22652 0.80769 0.95567 1.02200 1.87946 1.21195 1.82043 1.39031 0.92801 0.92873 0.92831 0.92153 0.91229 0.91237 0.90533 0.94242 0.89864 0.95037 0.90892 0.91657 0.92605 0.93705 0.93447 0.96613 0.96757 0.93051 0.88882 0.94180 0.92312 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.15 0.37 -0.66 16 2 C -0.12 -0.97 5.83 -26.73 -0.16 -1.12 16 3 C -0.11 -0.94 4.93 -26.73 -0.13 -1.08 16 4 C 0.09 0.99 2.81 -26.68 -0.07 0.91 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 6 C 0.02 0.26 4.93 -3.71 -0.02 0.25 16 7 N -0.54 -7.22 4.73 -234.31 -1.11 -8.33 16 8 C 0.06 0.83 4.96 -3.83 -0.02 0.81 16 9 C -0.11 -1.96 5.14 -26.73 -0.14 -2.10 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.01 0.17 5.43 -3.71 -0.02 0.15 16 21 C 0.07 0.72 7.01 37.21 0.26 0.98 16 22 O -0.38 -4.57 10.01 -35.23 -0.35 -4.92 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.63 7.82 -51.93 -0.41 0.22 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.97 6.51 -51.93 -0.34 0.63 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 1.19 6.37 -51.93 -0.33 0.86 16 42 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -30.75 345.80 -9.79 -40.54 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -8.64 Total: -5.11 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.62 Total: -17.67 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.37 Total: -34.96 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.35 Total: -4.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.75 -9.79 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.072 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds