Wall clock time and date at job start Mon Mar 30 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47415 * 2 1 4 4 C 1.52995 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.50701 * 55.08814 * 4 3 2 6 6 C 1.53102 * 109.50356 * 175.22141 * 4 3 2 7 7 N 1.47014 * 109.25736 * 176.78436 * 6 4 3 8 8 C 1.46893 * 111.00172 * 177.60562 * 7 6 4 9 9 C 1.53001 * 109.47408 * 189.68090 * 8 7 6 10 10 C 1.53000 * 109.47355 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47012 * 110.75453 * 301.38673 * 7 6 4 21 21 C 1.53094 * 109.26204 * 58.61164 * 20 7 6 22 22 O 1.43014 * 109.25754 * 303.15679 * 21 20 7 23 23 H 1.08999 * 109.46959 * 299.99641 * 1 2 3 24 24 H 1.09006 * 109.47196 * 59.99499 * 1 2 3 25 25 H 1.09003 * 109.47668 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46959 * 240.00359 * 2 1 3 27 27 H 1.08998 * 109.47290 * 120.00812 * 2 1 3 28 28 H 1.08999 * 109.46764 * 60.00239 * 3 2 1 29 29 H 1.08992 * 109.47163 * 300.00447 * 3 2 1 30 30 H 1.08999 * 109.50675 * 56.85110 * 6 4 3 31 31 H 1.08996 * 109.50531 * 296.71430 * 6 4 3 32 32 H 1.08994 * 109.47037 * 69.68025 * 8 7 6 33 33 H 1.09003 * 109.47550 * 309.68177 * 8 7 6 34 34 H 1.09002 * 109.46926 * 60.00242 * 9 8 7 35 35 H 1.08992 * 109.47494 * 300.00236 * 9 8 7 36 36 H 1.09002 * 109.46807 * 60.00291 * 10 9 8 37 37 H 1.08998 * 109.47285 * 299.99893 * 10 9 8 38 38 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 39 39 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 40 40 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 41 41 H 1.09003 * 109.51021 * 178.55092 * 20 7 6 42 42 H 1.09007 * 109.50436 * 298.67644 * 20 7 6 43 43 H 1.09006 * 109.50665 * 63.08846 * 21 20 7 44 44 H 1.08996 * 109.50900 * 183.17348 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9342 0.8542 -0.8416 6 6 4.0813 2.8805 -0.1196 7 7 5.5493 2.8813 -0.0409 8 6 6.0848 4.2388 -0.2092 9 6 7.6055 4.1718 -0.3633 10 6 8.1632 5.5856 -0.5393 11 6 9.6840 5.5186 -0.6928 12 6 10.2332 6.9112 -0.8654 13 1 9.5646 7.7594 -0.8653 14 6 11.5895 7.1027 -1.0236 15 7 12.4038 6.0700 -1.0233 16 14 12.2703 8.8289 -1.2384 17 1 12.3052 9.1711 -2.6830 18 1 11.4014 9.7965 -0.5213 19 1 13.6455 8.8914 -0.6815 20 6 6.0035 2.2891 1.2257 21 6 5.4729 0.8570 1.3325 22 8 4.0471 0.8728 1.2227 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.6729 3.4811 0.6932 31 1 3.7678 3.2994 -1.0757 32 1 5.8343 4.8391 0.6653 33 1 5.6491 4.6936 -1.0989 34 1 7.8559 3.5714 -1.2380 35 1 8.0412 3.7171 0.5262 36 1 7.9127 6.1863 0.3351 37 1 7.7275 6.0399 -1.4292 38 1 9.9348 4.9177 -1.5670 39 1 10.1193 5.0644 0.1974 40 1 13.3579 6.2047 -1.1350 41 1 7.0931 2.2764 1.2516 42 1 5.6259 2.8803 2.0600 43 1 5.8931 0.2522 0.5288 44 1 5.7598 0.4333 2.2949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709000117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:26 Heat of formation + Delta-G solvation = -97.833164 kcal Electronic energy + Delta-G solvation = -18955.112323 eV Core-core repulsion = 16098.225514 eV Total energy + Delta-G solvation = -2856.886809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77393 -37.78023 -36.04886 -35.72417 -34.10293 -32.23329 -30.77141 -28.82973 -27.08890 -25.44437 -24.38784 -22.80940 -21.87398 -21.58597 -21.28941 -18.43829 -17.55297 -17.30875 -16.63455 -16.51127 -16.06466 -15.85475 -15.43968 -15.41090 -15.02316 -14.50894 -14.18097 -13.91794 -13.66295 -13.55422 -13.18931 -13.00910 -12.84311 -12.75326 -12.37426 -12.34517 -12.25002 -12.10221 -11.89101 -11.83452 -11.54406 -11.40638 -11.35910 -11.22746 -11.04180 -10.56310 -10.51751 -9.40690 -8.20599 -6.32055 1.39045 1.40795 1.51879 2.40171 2.70554 2.85135 3.12052 3.69216 3.91514 3.97028 4.07920 4.10075 4.16664 4.20743 4.28491 4.36360 4.47871 4.51836 4.58728 4.61607 4.69756 4.71776 4.78326 4.83950 4.87542 4.91036 4.98210 5.02176 5.11067 5.19466 5.25688 5.29625 5.33402 5.38958 5.50649 5.53761 5.76076 5.85708 5.95509 5.99802 6.22959 6.25206 6.85409 7.37185 8.91281 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.058900 B = 0.002848 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.271670 B = 9827.686868 C =10119.638215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.106 4.106 4 C 0.093 3.907 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.548 5.548 8 C 0.067 3.933 9 C -0.102 4.102 10 C -0.096 4.096 11 C 0.023 3.977 12 C -0.544 4.544 13 H 0.060 0.940 14 C -0.004 4.004 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.263 1.263 19 H -0.281 1.281 20 C 0.013 3.987 21 C 0.067 3.933 22 O -0.394 6.394 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.058 0.942 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.275 -10.959 2.898 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.144 4.144 4 C 0.035 3.965 5 H 0.081 0.919 6 C -0.104 4.104 7 N -0.273 5.273 8 C -0.061 4.061 9 C -0.140 4.140 10 C -0.134 4.134 11 C -0.014 4.014 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.187 1.187 19 H -0.207 1.207 20 C -0.115 4.115 21 C -0.010 4.010 22 O -0.313 6.313 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.058 -11.366 2.648 24.955 hybrid contribution 0.916 1.367 0.393 1.692 sum -21.142 -9.999 3.041 23.584 Atomic orbital electron populations 1.21763 0.94935 1.02020 1.02049 1.21432 0.96372 0.95951 1.01959 1.21622 0.91057 0.98380 1.03362 1.22291 0.95377 0.91851 0.86941 0.91898 1.22861 0.87136 0.98028 1.02390 1.62219 1.09383 1.21309 1.34342 1.22057 0.94865 0.88254 1.00912 1.21479 0.94324 0.96847 1.01349 1.21397 0.95813 0.95872 1.00351 1.19014 0.92370 0.95404 0.94580 1.21737 0.92837 0.94233 1.49422 0.92190 1.26036 0.97670 1.01516 0.94918 1.70107 1.03876 1.32177 1.51296 0.85423 0.77555 0.79252 0.78671 1.19668 1.18720 1.20697 1.22870 1.01605 0.96842 0.90191 1.22703 0.80470 0.94550 1.03248 1.87944 1.21502 1.82147 1.39727 0.92797 0.92104 0.92340 0.91982 0.92570 0.91537 0.88937 0.94439 0.88638 0.94858 0.90001 0.92537 0.92931 0.93286 0.92874 0.99210 0.99289 0.92769 0.89632 0.94535 0.92343 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.73 5.83 30.59 0.18 -1.56 16 3 C -0.11 -1.62 4.93 30.59 0.15 -1.47 16 4 C 0.09 1.83 2.81 30.63 0.09 1.92 16 5 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 6 C 0.02 0.51 4.93 86.32 0.43 0.93 16 7 N -0.55 -14.07 4.73 -895.23 -4.23 -18.31 16 8 C 0.07 1.86 4.96 86.30 0.43 2.29 16 9 C -0.10 -3.53 5.14 30.59 0.16 -3.37 16 10 C -0.10 -4.01 5.15 30.59 0.16 -3.85 16 11 C 0.02 1.27 4.97 29.85 0.15 1.42 16 12 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 13 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 15 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 16 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 C 0.01 0.32 5.43 86.31 0.47 0.79 16 21 C 0.07 1.41 7.01 72.01 0.50 1.91 16 22 O -0.39 -8.94 10.01 -148.98 -1.49 -10.43 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.96 7.82 -2.39 -0.02 0.94 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 1.78 8.09 -2.39 -0.02 1.77 16 32 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.08 2.15 8.04 -2.39 -0.02 2.13 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.84 6.51 -2.39 -0.02 1.82 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H -0.01 -0.62 8.14 -2.38 -0.02 -0.63 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.09 2.18 6.37 -2.39 -0.02 2.17 16 42 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.50 345.80 1.61 -63.88 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.91 Total: 8.90 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 4.11 Total: -33.25 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -3.95 Total: -75.97 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.49 Total: -10.43 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.50 1.61 -63.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709000117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.949 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds