Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 C 1.53003 * 109.47096 * 119.99428 * 2 1 3 5 5 H 1.09000 * 109.54096 * 59.89324 * 4 2 1 6 6 C 1.53092 * 109.50570 * 180.02562 * 4 2 1 7 7 N 1.47021 * 109.25822 * 176.78422 * 6 4 2 8 8 C 1.46902 * 110.99944 * 177.60586 * 7 6 4 9 9 C 1.53001 * 109.46901 * 169.99790 * 8 7 6 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.47013 * 110.75215 * 301.38471 * 7 6 4 21 21 C 1.53097 * 109.25489 * 58.61454 * 20 7 6 22 22 O 1.43013 * 109.50764 * 299.78952 * 4 2 1 23 23 H 1.09001 * 109.47513 * 299.99863 * 1 2 3 24 24 H 1.09003 * 109.47187 * 60.00509 * 1 2 3 25 25 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47265 * 239.99663 * 2 1 3 27 27 H 1.09003 * 109.46830 * 299.99709 * 3 2 1 28 28 H 1.08999 * 109.47482 * 59.99796 * 3 2 1 29 29 H 1.08993 * 109.47248 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.50810 * 56.85151 * 6 4 2 31 31 H 1.09004 * 109.54934 * 296.74280 * 6 4 2 32 32 H 1.09001 * 109.46712 * 50.00193 * 8 7 6 33 33 H 1.09002 * 109.47411 * 290.00304 * 8 7 6 34 34 H 1.09001 * 109.46652 * 60.00371 * 9 8 7 35 35 H 1.08992 * 109.47514 * 300.00460 * 9 8 7 36 36 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 37 37 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 39 39 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 40 40 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 41 41 H 1.08997 * 109.50492 * 178.54678 * 20 7 6 42 42 H 1.09006 * 109.50649 * 298.67985 * 20 7 6 43 43 H 1.09007 * 109.50196 * 183.21235 * 21 20 7 44 44 H 1.09002 * 109.54530 * 63.10909 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6757 -1.7485 1.2515 6 6 3.5709 -0.7210 1.2505 7 7 4.0549 -1.3465 2.4898 8 6 5.5222 -1.4179 2.5053 9 6 5.9976 -1.8385 3.8974 10 6 7.5257 -1.9122 3.9136 11 6 8.0012 -2.3334 5.3055 12 6 9.5064 -2.4054 5.3218 13 1 10.0678 -2.1735 4.4288 14 6 10.1669 -2.7664 6.4770 15 7 9.4832 -3.0483 7.5646 16 14 12.0326 -2.8563 6.4970 17 1 12.5599 -2.4952 5.1566 18 1 12.5631 -1.9078 7.5091 19 1 12.4580 -4.2367 6.8414 20 6 3.5500 -0.6269 3.6681 21 6 2.0192 -0.6280 3.6427 22 8 1.5678 -0.0446 2.4175 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1298 1.4426 0.0005 30 1 3.9349 0.3049 1.1943 31 1 3.9363 -1.2843 0.3917 32 1 5.9360 -0.4397 2.2602 33 1 5.8582 -2.1492 1.7701 34 1 5.5837 -2.8166 4.1424 35 1 5.6616 -1.1073 4.6324 36 1 7.8622 -2.6432 3.1784 37 1 7.9393 -0.9339 3.6688 38 1 7.6648 -1.6027 6.0410 39 1 7.5877 -3.3118 5.5501 40 1 9.9479 -3.3019 8.3774 41 1 3.8992 -1.1220 4.5742 42 1 3.9136 0.4005 3.6507 43 1 1.6408 -0.0469 4.4837 44 1 1.6540 -1.6525 3.7146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709012395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -72.222124 kcal Electronic energy + Delta-G solvation = -19345.265462 eV Core-core repulsion = 16489.489231 eV Total energy + Delta-G solvation = -2855.776231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00633 -36.81221 -35.25497 -34.13637 -32.17558 -30.31325 -29.13957 -27.39851 -26.58419 -24.33312 -23.98757 -21.95376 -20.42597 -19.94406 -19.85355 -16.57604 -16.25434 -16.13287 -15.46088 -15.27898 -15.05082 -14.48695 -14.21651 -14.13468 -13.93248 -13.34656 -12.93727 -12.53630 -12.30866 -12.27033 -12.02518 -11.80397 -11.58693 -11.54721 -11.18776 -11.01932 -10.94314 -10.86136 -10.61164 -10.49306 -10.41278 -10.27487 -9.68621 -9.60277 -9.24711 -9.00088 -8.33958 -8.30347 -5.98473 -4.00575 3.31489 3.38796 3.43101 3.63066 3.81655 4.47223 4.56380 4.64718 4.82911 4.95881 4.98865 5.10529 5.19447 5.26883 5.37156 5.42945 5.43672 5.47364 5.50457 5.55890 5.66122 5.68909 5.78531 5.79314 5.85513 5.86440 5.92397 6.10651 6.13340 6.19331 6.26219 6.46575 6.78388 6.93096 6.99357 7.02437 7.12601 7.21037 7.70334 7.85571 8.02448 8.45500 9.07072 9.63409 11.12958 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.054345 B = 0.003117 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.106310 B = 8980.715815 C = 9273.533109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.099 3.901 5 H 0.065 0.935 6 C 0.021 3.979 7 N -0.538 5.538 8 C 0.056 3.944 9 C -0.121 4.121 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.011 3.989 21 C 0.065 3.935 22 O -0.380 6.380 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.096 0.904 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 6.307 -13.819 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.041 3.959 5 H 0.082 0.918 6 C -0.108 4.108 7 N -0.263 5.263 8 C -0.071 4.071 9 C -0.158 4.158 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.117 4.117 21 C -0.012 4.012 22 O -0.299 6.299 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.114 0.886 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.927 5.938 -13.633 23.292 hybrid contribution 1.677 0.467 0.164 1.748 sum -16.251 6.405 -13.469 22.057 Atomic orbital electron populations 1.21751 0.94504 1.01707 1.02032 1.21142 0.96652 0.96964 0.95874 1.21837 1.00916 0.95651 1.01980 1.22153 0.92090 0.95813 0.85843 0.91750 1.22866 0.95925 0.98331 0.93637 1.62301 1.10795 1.51643 1.01574 1.22264 0.85201 0.99881 0.99712 1.21808 0.98063 1.01560 0.94391 1.21595 0.91825 1.00140 1.01130 1.19090 0.95660 0.96511 0.90326 1.21321 0.92166 1.45655 0.96619 0.92722 1.25039 0.98318 0.95493 0.95722 1.69980 1.35228 1.47041 1.01329 0.86551 0.85924 0.77629 0.77999 1.19766 1.21036 1.21001 1.22898 0.95855 0.97444 0.95477 1.22672 0.93004 0.98835 0.86734 1.87935 1.72851 1.55442 1.13623 0.91790 0.92866 0.92898 0.90140 0.92942 0.91818 0.92668 0.93665 0.90080 0.95063 0.90737 0.91605 0.92334 0.93375 0.93664 0.96778 0.96608 0.93096 0.88532 0.94121 0.88586 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.05 37.16 0.34 -0.81 16 2 C -0.09 -0.76 2.81 -90.62 -0.25 -1.01 16 3 C -0.15 -1.28 8.70 37.16 0.32 -0.96 16 4 C 0.10 1.05 2.54 -26.68 -0.07 0.98 16 5 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 6 C 0.02 0.24 4.64 -3.71 -0.02 0.22 16 7 N -0.54 -7.22 4.88 -234.30 -1.14 -8.36 16 8 C 0.06 0.83 5.28 -3.82 -0.02 0.81 16 9 C -0.12 -2.07 4.48 -26.73 -0.12 -2.19 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.01 0.14 4.94 -3.71 -0.02 0.13 16 21 C 0.06 0.72 7.01 37.21 0.26 0.98 16 22 O -0.38 -4.48 9.12 -35.23 -0.32 -4.80 16 23 H 0.06 0.58 7.69 -51.93 -0.40 0.18 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 29 H 0.05 0.50 6.36 -51.93 -0.33 0.16 16 30 H 0.05 0.54 6.27 -51.92 -0.33 0.21 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.00 6.28 -51.93 -0.33 0.67 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.10 1.27 6.05 -51.93 -0.31 0.96 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -30.52 338.88 -9.30 -39.83 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -8.40 Total: -4.45 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -0.27 Total: -17.62 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.41 Total: -34.95 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.32 Total: -4.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.52 -9.30 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709012395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.394 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds