Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 C 1.53003 * 109.47096 * 119.99428 * 2 1 3 5 5 H 1.09000 * 109.54096 * 59.89324 * 4 2 1 6 6 C 1.53092 * 109.50570 * 180.02562 * 4 2 1 7 7 N 1.47021 * 109.25822 * 176.78422 * 6 4 2 8 8 C 1.46902 * 110.99944 * 177.60586 * 7 6 4 9 9 C 1.53001 * 109.46901 * 169.99790 * 8 7 6 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.47013 * 110.75215 * 301.38471 * 7 6 4 21 21 C 1.53097 * 109.25489 * 58.61454 * 20 7 6 22 22 O 1.43013 * 109.50764 * 299.78952 * 4 2 1 23 23 H 1.09001 * 109.47513 * 299.99863 * 1 2 3 24 24 H 1.09003 * 109.47187 * 60.00509 * 1 2 3 25 25 H 1.09003 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47265 * 239.99663 * 2 1 3 27 27 H 1.09003 * 109.46830 * 299.99709 * 3 2 1 28 28 H 1.08999 * 109.47482 * 59.99796 * 3 2 1 29 29 H 1.08993 * 109.47248 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.50810 * 56.85151 * 6 4 2 31 31 H 1.09004 * 109.54934 * 296.74280 * 6 4 2 32 32 H 1.09001 * 109.46712 * 50.00193 * 8 7 6 33 33 H 1.09002 * 109.47411 * 290.00304 * 8 7 6 34 34 H 1.09001 * 109.46652 * 60.00371 * 9 8 7 35 35 H 1.08992 * 109.47514 * 300.00460 * 9 8 7 36 36 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 37 37 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 39 39 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 40 40 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 41 41 H 1.08997 * 109.50492 * 178.54678 * 20 7 6 42 42 H 1.09006 * 109.50649 * 298.67985 * 20 7 6 43 43 H 1.09007 * 109.50196 * 183.21235 * 21 20 7 44 44 H 1.09002 * 109.54530 * 63.10909 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6757 -1.7485 1.2515 6 6 3.5709 -0.7210 1.2505 7 7 4.0549 -1.3465 2.4898 8 6 5.5222 -1.4179 2.5053 9 6 5.9976 -1.8385 3.8974 10 6 7.5257 -1.9122 3.9136 11 6 8.0012 -2.3334 5.3055 12 6 9.5064 -2.4054 5.3218 13 1 10.0678 -2.1735 4.4288 14 6 10.1669 -2.7664 6.4770 15 7 9.4832 -3.0483 7.5646 16 14 12.0326 -2.8563 6.4970 17 1 12.5599 -2.4952 5.1566 18 1 12.5631 -1.9078 7.5091 19 1 12.4580 -4.2367 6.8414 20 6 3.5500 -0.6269 3.6681 21 6 2.0192 -0.6280 3.6427 22 8 1.5678 -0.0446 2.4175 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.1298 1.4426 0.0005 30 1 3.9349 0.3049 1.1943 31 1 3.9363 -1.2843 0.3917 32 1 5.9360 -0.4397 2.2602 33 1 5.8582 -2.1492 1.7701 34 1 5.5837 -2.8166 4.1424 35 1 5.6616 -1.1073 4.6324 36 1 7.8622 -2.6432 3.1784 37 1 7.9393 -0.9339 3.6688 38 1 7.6648 -1.6027 6.0410 39 1 7.5877 -3.3118 5.5501 40 1 9.9479 -3.3019 8.3774 41 1 3.8992 -1.1220 4.5742 42 1 3.9136 0.4005 3.6507 43 1 1.6408 -0.0469 4.4837 44 1 1.6540 -1.6525 3.7146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709012395.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -90.579080 kcal Electronic energy + Delta-G solvation = -19346.061479 eV Core-core repulsion = 16489.489231 eV Total energy + Delta-G solvation = -2856.572248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93162 -37.94675 -36.15548 -35.81652 -34.07117 -31.20649 -30.72247 -28.22553 -27.83658 -25.87305 -25.03328 -23.30873 -21.92307 -21.23814 -20.68657 -18.44858 -17.45778 -17.12630 -16.63561 -16.51103 -16.24685 -16.00370 -15.44413 -15.08010 -14.85044 -14.51836 -14.30183 -13.80992 -13.66766 -13.58482 -13.12964 -13.00727 -12.86775 -12.79745 -12.54664 -12.34965 -12.28268 -12.06625 -11.88674 -11.70440 -11.59574 -11.41608 -11.36575 -11.19867 -10.99870 -10.57428 -10.51583 -9.36612 -8.21347 -6.32699 1.38876 1.39177 1.52723 2.39793 2.73140 2.86396 3.11555 3.72150 3.87072 3.98351 4.02352 4.10975 4.12379 4.20702 4.23654 4.41754 4.46185 4.52347 4.60474 4.63553 4.71891 4.75109 4.82884 4.85864 4.88669 4.95580 4.96841 5.06528 5.09151 5.18235 5.22597 5.25553 5.29929 5.43936 5.52595 5.52925 5.75194 5.84959 5.94639 6.00531 6.24135 6.25160 6.84912 7.36753 8.90783 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.054345 B = 0.003117 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.106310 B = 8980.715815 C = 9273.533109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.098 3.902 5 H 0.063 0.937 6 C 0.021 3.979 7 N -0.545 5.545 8 C 0.066 3.934 9 C -0.109 4.109 10 C -0.096 4.096 11 C 0.024 3.976 12 C -0.544 4.544 13 H 0.059 0.941 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.011 3.989 21 C 0.067 3.933 22 O -0.388 6.388 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.048 0.952 38 H -0.011 1.011 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.112 0.888 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.521 6.588 -15.432 24.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.040 3.960 5 H 0.081 0.919 6 C -0.106 4.106 7 N -0.270 5.270 8 C -0.061 4.061 9 C -0.147 4.147 10 C -0.134 4.134 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.117 4.117 21 C -0.010 4.010 22 O -0.308 6.308 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.007 0.993 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.130 0.870 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.810 6.225 -15.262 24.267 hybrid contribution 1.597 0.377 0.687 1.779 sum -16.213 6.602 -14.575 22.779 Atomic orbital electron populations 1.21721 0.93975 1.01952 1.02037 1.21187 0.97066 0.96771 0.95412 1.21804 1.00615 0.95746 1.01924 1.22261 0.91401 0.96006 0.86284 0.91946 1.22939 0.96591 0.98125 0.92993 1.62308 1.09798 1.52298 1.02626 1.22080 0.86258 1.00039 0.97741 1.21623 0.95400 1.01273 0.96372 1.21396 0.94300 1.00114 0.97628 1.19011 0.94872 0.94486 0.92969 1.21765 0.93543 1.45837 0.97044 0.92239 1.26021 1.03956 0.94846 0.95228 1.70111 1.37565 1.47719 1.02084 0.85381 0.79121 0.77905 0.78542 1.18560 1.20314 1.20262 1.22901 0.97102 0.96725 0.94980 1.22707 0.91715 0.99333 0.87238 1.87938 1.72917 1.55833 1.14069 0.93129 0.91510 0.92544 0.88519 0.91521 0.93335 0.93059 0.93999 0.88875 0.94895 0.90004 0.92314 0.92557 0.92880 0.93306 0.99267 0.99137 0.92756 0.89425 0.94872 0.86995 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.05 71.98 0.65 -1.33 16 2 C -0.09 -1.31 2.81 -10.79 -0.03 -1.34 16 3 C -0.14 -2.28 8.70 71.98 0.63 -1.65 16 4 C 0.10 1.93 2.54 30.63 0.08 2.01 16 5 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 6 C 0.02 0.46 4.64 86.31 0.40 0.86 16 7 N -0.55 -14.05 4.88 -895.18 -4.36 -18.41 16 8 C 0.07 1.86 5.28 86.30 0.46 2.32 16 9 C -0.11 -3.73 4.48 30.59 0.14 -3.60 16 10 C -0.10 -4.00 5.15 30.59 0.16 -3.85 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 16 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C 0.01 0.28 4.94 86.31 0.43 0.70 16 21 C 0.07 1.43 7.01 72.01 0.50 1.93 16 22 O -0.39 -8.74 9.12 -148.98 -1.36 -10.10 16 23 H 0.05 0.85 7.69 -2.39 -0.02 0.84 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.91 7.68 -2.39 -0.02 0.89 16 29 H 0.05 0.84 6.36 -2.39 -0.02 0.83 16 30 H 0.04 0.94 6.27 -2.38 -0.01 0.92 16 31 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.94 6.28 -2.39 -0.02 1.93 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.09 2.32 6.05 -2.39 -0.01 2.31 16 42 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -65.06 338.88 1.76 -63.31 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.92 Total: 9.55 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 4.25 Total: -33.64 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -4.08 Total: -75.95 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.36 Total: -10.10 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.06 1.76 -63.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709012395.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.273 kcal (2) G-P(sol) polarization free energy of solvation -65.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds