Wall clock time and date at job start Mon Mar 30 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 C 1.53001 * 109.46853 * 119.99714 * 2 1 3 5 5 H 1.09003 * 109.50716 * 299.91166 * 4 2 1 6 6 C 1.53097 * 109.50176 * 179.78524 * 4 2 1 7 7 N 1.47015 * 109.25708 * 183.21852 * 6 4 2 8 8 C 1.46906 * 111.00179 * 182.39002 * 7 6 4 9 9 C 1.53002 * 109.47053 * 302.41276 * 8 7 6 10 10 C 1.52996 * 109.46891 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 119.99848 * 16 14 12 19 19 H 1.48501 * 109.47057 * 239.99829 * 16 14 12 20 20 C 1.47014 * 110.75596 * 58.61483 * 7 6 4 21 21 C 1.53103 * 109.25494 * 301.38520 * 20 7 6 22 22 O 1.43015 * 109.50834 * 60.00276 * 4 2 1 23 23 H 1.08999 * 109.47111 * 299.99856 * 1 2 3 24 24 H 1.08998 * 109.47367 * 60.00000 * 1 2 3 25 25 H 1.08998 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47111 * 240.00144 * 2 1 3 27 27 H 1.08999 * 109.47135 * 60.00159 * 3 2 1 28 28 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46694 * 299.99833 * 3 2 1 30 30 H 1.08994 * 109.51032 * 63.28108 * 6 4 2 31 31 H 1.09001 * 109.50910 * 303.14703 * 6 4 2 32 32 H 1.08998 * 109.46779 * 182.40643 * 8 7 6 33 33 H 1.09001 * 109.46544 * 62.41034 * 8 7 6 34 34 H 1.08992 * 109.47056 * 59.99670 * 9 8 7 35 35 H 1.08996 * 109.46698 * 299.99786 * 9 8 7 36 36 H 1.09001 * 109.47372 * 59.99964 * 10 9 8 37 37 H 1.09004 * 109.47108 * 299.99708 * 10 9 8 38 38 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 39 39 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 40 40 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 41 41 H 1.09003 * 109.50730 * 61.31655 * 20 7 6 42 42 H 1.08997 * 109.51138 * 181.40757 * 20 7 6 43 43 H 1.09000 * 109.50715 * 176.78215 * 21 20 7 44 44 H 1.08997 * 109.50476 * 296.91448 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6782 -0.2068 2.1397 6 6 3.5709 -0.7263 1.2474 7 7 4.0547 -1.4868 2.4088 8 6 5.5221 -1.4685 2.4760 9 6 6.0992 -2.0398 1.1793 10 6 7.6274 -2.0213 1.2496 11 6 8.2045 -2.5932 -0.0469 12 6 9.7098 -2.5744 0.0220 13 1 10.2053 -2.1931 0.9027 14 6 10.4544 -3.0440 -1.0391 15 7 9.8510 -3.5078 -2.1117 16 14 12.3203 -3.0213 -0.9533 17 1 12.7491 -2.4544 0.3504 18 1 12.8388 -4.4066 -1.0858 19 1 12.8564 -2.1845 -2.0568 20 6 3.5460 -2.8657 2.3774 21 6 2.0152 -2.8391 2.3680 22 8 1.5637 -2.0697 1.2501 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 3.9384 0.2982 1.3044 31 1 3.9322 -1.1928 0.3309 32 1 5.8547 -2.0735 3.3195 33 1 5.8670 -0.4427 2.6063 34 1 5.7665 -1.4347 0.3360 35 1 5.7542 -3.0655 1.0491 36 1 7.9597 -2.6267 2.0929 37 1 7.9728 -0.9957 1.3801 38 1 7.8721 -1.9881 -0.8904 39 1 7.8591 -3.6188 -0.1771 40 1 10.3749 -3.8385 -2.8581 41 1 3.9068 -3.3664 1.4789 42 1 3.8958 -3.4030 3.2588 43 1 1.6339 -3.8570 2.2870 44 1 1.6534 -2.3866 3.2912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709012396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:32 Heat of formation + Delta-G solvation = -74.680278 kcal Electronic energy + Delta-G solvation = -19575.488187 eV Core-core repulsion = 16719.605363 eV Total energy + Delta-G solvation = -2855.882825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.98962 -36.80827 -35.41897 -34.04417 -32.08127 -30.29226 -29.05054 -27.38182 -26.38336 -24.20684 -23.97540 -22.18177 -20.44896 -20.25650 -19.59464 -16.61702 -16.37561 -16.21816 -15.48056 -14.85865 -14.58057 -14.49203 -14.42388 -14.17315 -13.74768 -13.37539 -12.90998 -12.54488 -12.30588 -12.22273 -11.95092 -11.84399 -11.71669 -11.38127 -11.28283 -11.04844 -10.93774 -10.86279 -10.56023 -10.53402 -10.37462 -10.27359 -9.65219 -9.60973 -9.41133 -9.06509 -8.34636 -8.14510 -5.99211 -4.01700 3.30821 3.38137 3.42486 3.63230 3.88712 4.46291 4.62045 4.77347 4.92234 4.96500 5.09688 5.14652 5.19535 5.27036 5.36202 5.40958 5.48914 5.51597 5.53683 5.56057 5.69115 5.73075 5.77339 5.82601 5.89448 5.92417 5.98598 6.07696 6.17524 6.20989 6.26417 6.48389 6.71976 6.90054 7.02010 7.03030 7.16446 7.17302 7.68874 7.83527 8.01219 8.44197 9.05989 9.62463 11.12120 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.003701 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.280022 B = 7563.678233 C = 7940.529078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.148 4.148 4 C 0.100 3.900 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.538 5.538 8 C 0.054 3.946 9 C -0.154 4.154 10 C -0.106 4.106 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.011 3.989 21 C 0.067 3.933 22 O -0.381 6.381 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.424 6.165 7.849 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.206 4.206 4 C 0.042 3.958 5 H 0.081 0.919 6 C -0.111 4.111 7 N -0.261 5.261 8 C -0.074 4.074 9 C -0.193 4.193 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.117 4.117 21 C -0.011 4.011 22 O -0.300 6.300 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.699 6.250 7.979 21.269 hybrid contribution 1.695 -0.432 -0.606 1.851 sum -17.004 5.818 7.373 19.425 Atomic orbital electron populations 1.21742 0.94556 1.02310 1.01250 1.21100 0.96545 0.95797 0.97421 1.21872 1.01601 0.95023 1.02076 1.22199 0.92288 0.83184 0.98124 0.91939 1.22895 0.95451 0.99578 0.93172 1.62538 1.10372 1.12628 1.40556 1.22314 0.85151 1.01784 0.98142 1.22275 0.98737 1.00732 0.97582 1.21542 0.91631 1.00312 1.00914 1.19099 0.95266 0.95889 0.91392 1.21322 0.91882 1.40953 1.01639 0.92679 1.25043 0.98600 0.95425 0.95501 1.69986 1.35262 1.42443 1.05879 0.86547 0.85864 0.77658 0.78014 1.19732 1.21011 1.21006 1.22817 0.95972 0.90673 1.02241 1.22623 0.92944 0.96077 0.89409 1.87951 1.72593 1.23129 1.46353 0.92994 0.92822 0.91903 0.90385 0.92479 0.92009 0.92095 0.89640 0.92993 0.90792 0.90733 0.92342 0.92523 0.93471 0.93434 0.96839 0.96855 0.93098 0.93174 0.89829 0.88682 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.05 37.16 0.34 -0.95 16 2 C -0.09 -0.91 2.72 -90.62 -0.25 -1.16 16 3 C -0.15 -1.30 8.85 37.16 0.33 -0.97 16 4 C 0.10 1.16 2.38 -26.68 -0.06 1.09 16 5 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 6 C 0.02 0.22 3.96 -3.71 -0.01 0.21 16 7 N -0.54 -7.14 4.94 -234.30 -1.16 -8.29 16 8 C 0.05 0.76 5.38 -3.82 -0.02 0.74 16 9 C -0.15 -2.67 4.50 -26.73 -0.12 -2.79 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.01 0.14 5.33 -3.71 -0.02 0.12 16 21 C 0.07 0.73 7.01 37.21 0.26 0.99 16 22 O -0.38 -4.87 9.80 -35.23 -0.35 -5.22 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.57 6.51 -51.93 -0.34 0.23 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.03 6.62 -51.93 -0.34 0.68 16 31 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 32 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.04 6.42 -51.93 -0.33 0.71 16 35 H 0.06 1.01 6.61 -51.93 -0.34 0.67 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.05 0.71 6.59 -51.93 -0.34 0.36 16 42 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -30.87 337.72 -9.26 -40.12 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.31 Total: -3.41 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -0.25 Total: -18.48 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.42 Total: -35.02 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.35 Total: -5.22 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.87 -9.26 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709012396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.558 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds