Wall clock time and date at job start Mon Mar 30 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46872 * 2 1 4 4 C 1.53001 * 109.46853 * 119.99714 * 2 1 3 5 5 H 1.09003 * 109.50716 * 299.91166 * 4 2 1 6 6 C 1.53097 * 109.50176 * 179.78524 * 4 2 1 7 7 N 1.47015 * 109.25708 * 183.21852 * 6 4 2 8 8 C 1.46906 * 111.00179 * 182.39002 * 7 6 4 9 9 C 1.53002 * 109.47053 * 302.41276 * 8 7 6 10 10 C 1.52996 * 109.46891 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 119.99848 * 16 14 12 19 19 H 1.48501 * 109.47057 * 239.99829 * 16 14 12 20 20 C 1.47014 * 110.75596 * 58.61483 * 7 6 4 21 21 C 1.53103 * 109.25494 * 301.38520 * 20 7 6 22 22 O 1.43015 * 109.50834 * 60.00276 * 4 2 1 23 23 H 1.08999 * 109.47111 * 299.99856 * 1 2 3 24 24 H 1.08998 * 109.47367 * 60.00000 * 1 2 3 25 25 H 1.08998 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47111 * 240.00144 * 2 1 3 27 27 H 1.08999 * 109.47135 * 60.00159 * 3 2 1 28 28 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46694 * 299.99833 * 3 2 1 30 30 H 1.08994 * 109.51032 * 63.28108 * 6 4 2 31 31 H 1.09001 * 109.50910 * 303.14703 * 6 4 2 32 32 H 1.08998 * 109.46779 * 182.40643 * 8 7 6 33 33 H 1.09001 * 109.46544 * 62.41034 * 8 7 6 34 34 H 1.08992 * 109.47056 * 59.99670 * 9 8 7 35 35 H 1.08996 * 109.46698 * 299.99786 * 9 8 7 36 36 H 1.09001 * 109.47372 * 59.99964 * 10 9 8 37 37 H 1.09004 * 109.47108 * 299.99708 * 10 9 8 38 38 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 39 39 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 40 40 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 41 41 H 1.09003 * 109.50730 * 61.31655 * 20 7 6 42 42 H 1.08997 * 109.51138 * 181.40757 * 20 7 6 43 43 H 1.09000 * 109.50715 * 176.78215 * 21 20 7 44 44 H 1.08997 * 109.50476 * 296.91448 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6782 -0.2068 2.1397 6 6 3.5709 -0.7263 1.2474 7 7 4.0547 -1.4868 2.4088 8 6 5.5221 -1.4685 2.4760 9 6 6.0992 -2.0398 1.1793 10 6 7.6274 -2.0213 1.2496 11 6 8.2045 -2.5932 -0.0469 12 6 9.7098 -2.5744 0.0220 13 1 10.2053 -2.1931 0.9027 14 6 10.4544 -3.0440 -1.0391 15 7 9.8510 -3.5078 -2.1117 16 14 12.3203 -3.0213 -0.9533 17 1 12.7491 -2.4544 0.3504 18 1 12.8388 -4.4066 -1.0858 19 1 12.8564 -2.1845 -2.0568 20 6 3.5460 -2.8657 2.3774 21 6 2.0152 -2.8391 2.3680 22 8 1.5637 -2.0697 1.2501 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 3.9384 0.2982 1.3044 31 1 3.9322 -1.1928 0.3309 32 1 5.8547 -2.0735 3.3195 33 1 5.8670 -0.4427 2.6063 34 1 5.7665 -1.4347 0.3360 35 1 5.7542 -3.0655 1.0491 36 1 7.9597 -2.6267 2.0929 37 1 7.9728 -0.9957 1.3801 38 1 7.8721 -1.9881 -0.8904 39 1 7.8591 -3.6188 -0.1771 40 1 10.3749 -3.8385 -2.8581 41 1 3.9068 -3.3664 1.4789 42 1 3.8958 -3.4030 3.2588 43 1 1.6339 -3.8570 2.2870 44 1 1.6534 -2.3866 3.2912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709012396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:31 Heat of formation + Delta-G solvation = -93.733832 kcal Electronic energy + Delta-G solvation = -19576.314411 eV Core-core repulsion = 16719.605363 eV Total energy + Delta-G solvation = -2856.709049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97845 -37.97488 -36.31920 -35.84629 -33.98427 -31.24080 -30.58760 -28.39159 -27.62566 -25.68544 -25.09562 -23.51395 -22.16954 -21.15408 -20.76736 -18.47603 -17.56035 -17.35527 -16.59424 -16.50173 -15.97500 -15.72512 -15.62588 -15.18156 -14.76201 -14.44526 -14.37519 -13.80084 -13.62841 -13.62658 -13.31245 -12.97470 -12.88466 -12.83564 -12.41987 -12.34259 -12.32016 -12.15567 -11.97728 -11.77247 -11.67102 -11.47387 -11.32356 -11.27748 -11.05773 -10.59979 -10.57359 -9.33310 -8.23168 -6.35516 1.37821 1.38340 1.52091 2.38460 2.73743 2.86536 3.09454 3.72141 3.91232 3.92689 4.02234 4.07187 4.13771 4.18798 4.28277 4.37455 4.42403 4.43936 4.59884 4.65346 4.69713 4.77252 4.81479 4.81900 4.88374 4.95339 5.00288 5.01586 5.07656 5.10009 5.22752 5.24804 5.28015 5.40833 5.46036 5.49681 5.69918 5.81725 5.93571 5.95801 6.21241 6.25354 6.82185 7.34458 8.88856 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029708 B = 0.003701 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.280022 B = 7563.678233 C = 7940.529078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.103 3.897 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.533 5.533 8 C 0.063 3.937 9 C -0.142 4.142 10 C -0.093 4.093 11 C 0.023 3.977 12 C -0.544 4.544 13 H 0.062 0.938 14 C -0.004 4.004 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.009 3.991 21 C 0.066 3.934 22 O -0.398 6.398 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.054 0.946 38 H -0.015 1.015 39 H -0.016 1.016 40 H 0.264 0.736 41 H 0.027 0.973 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 7.066 9.405 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.202 4.202 4 C 0.045 3.955 5 H 0.089 0.911 6 C -0.110 4.110 7 N -0.256 5.256 8 C -0.065 4.065 9 C -0.181 4.181 10 C -0.131 4.131 11 C -0.014 4.014 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.120 4.120 21 C -0.010 4.010 22 O -0.318 6.318 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.697 7.155 9.549 22.180 hybrid contribution 1.656 -0.742 -1.127 2.136 sum -17.041 6.413 8.423 20.061 Atomic orbital electron populations 1.21698 0.93516 1.01862 1.02287 1.21124 0.97406 0.96355 0.96064 1.21851 1.01098 0.94135 1.03140 1.22255 0.91186 0.83008 0.99059 0.91106 1.22929 0.96576 0.99672 0.91866 1.62606 1.09432 1.13144 1.40428 1.22223 0.85790 1.02193 0.96299 1.22125 0.96288 1.00280 0.99371 1.21353 0.93761 1.00193 0.97819 1.19028 0.94942 0.94031 0.93422 1.21764 0.93135 1.41180 1.02105 0.91981 1.26058 1.04423 0.94713 0.94943 1.70125 1.37580 1.43170 1.06748 0.85349 0.78796 0.77983 0.78625 1.18356 1.20297 1.20273 1.22908 0.97168 0.90074 1.01801 1.22757 0.91761 0.97043 0.89470 1.87942 1.72761 1.23773 1.47277 0.92009 0.91720 0.93072 0.92127 0.91315 0.92766 0.91138 0.88780 0.95490 0.89699 0.89806 0.93368 0.93606 0.92762 0.92717 0.99670 0.99715 0.92769 0.95478 0.88358 0.86979 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.05 71.98 0.65 -1.66 16 2 C -0.09 -1.78 2.72 -10.79 -0.03 -1.81 16 3 C -0.15 -2.35 8.85 71.98 0.64 -1.72 16 4 C 0.10 2.29 2.38 30.63 0.07 2.36 16 5 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 6 C 0.02 0.45 3.96 86.31 0.34 0.79 16 7 N -0.53 -13.53 4.94 -895.19 -4.42 -17.94 16 8 C 0.06 1.71 5.38 86.30 0.46 2.17 16 9 C -0.14 -4.95 4.50 30.59 0.14 -4.81 16 10 C -0.09 -3.89 5.15 30.59 0.16 -3.73 16 11 C 0.02 1.26 4.97 29.85 0.15 1.41 16 12 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 13 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 15 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 16 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.01 0.21 5.33 86.32 0.46 0.67 16 21 C 0.07 1.37 7.01 72.02 0.50 1.87 16 22 O -0.40 -9.88 9.80 -148.98 -1.46 -11.34 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.95 6.51 -2.39 -0.02 0.94 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.09 2.18 6.62 -2.39 -0.02 2.16 16 31 H 0.03 0.81 6.40 -2.39 -0.02 0.80 16 32 H 0.08 2.16 8.11 -2.39 -0.02 2.14 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 1.77 6.42 -2.39 -0.02 1.75 16 35 H 0.05 1.69 6.61 -2.39 -0.02 1.67 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 38 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.03 0.77 6.59 -2.39 -0.02 0.76 16 42 H 0.10 2.04 8.12 -2.39 -0.02 2.02 16 43 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -66.73 337.72 1.60 -65.13 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.92 Total: 11.23 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 4.24 Total: -35.83 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -4.13 Total: -76.15 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.46 Total: -11.34 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.73 1.60 -65.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709012396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.607 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds