Wall clock time and date at job start Mon Mar 30 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.52995 * 109.47403 * 119.99993 * 2 1 3 5 5 H 1.08994 * 110.56739 * 185.01759 * 4 2 1 6 6 C 1.54473 * 110.51377 * 307.69928 * 4 2 1 7 7 O 1.44420 * 104.80601 * 142.61909 * 6 4 2 8 8 C 1.44420 * 105.27944 * 319.48756 * 7 6 4 9 9 C 1.54486 * 104.79902 * 40.50876 * 8 7 6 10 10 H 1.09007 * 110.50796 * 94.80396 * 9 8 7 11 11 N 1.46894 * 110.51098 * 217.37344 * 9 8 7 12 12 C 1.46896 * 111.00403 * 285.06823 * 11 9 8 13 13 C 1.53007 * 109.47291 * 179.97438 * 12 11 9 14 14 C 1.52991 * 109.47238 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47270 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47103 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00351 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99603 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00376 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99569 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47354 * 90.00240 * 20 18 16 22 22 H 1.48509 * 109.46828 * 209.99804 * 20 18 16 23 23 H 1.48501 * 109.47505 * 329.99572 * 20 18 16 24 24 H 1.09000 * 109.46981 * 68.93901 * 1 2 3 25 25 H 1.09004 * 109.46530 * 188.93703 * 1 2 3 26 26 H 1.08992 * 109.46961 * 308.93504 * 1 2 3 27 27 H 1.09002 * 109.47359 * 240.00402 * 2 1 3 28 28 H 1.08996 * 109.47317 * 174.92638 * 3 2 1 29 29 H 1.09001 * 109.47416 * 294.92855 * 3 2 1 30 30 H 1.09004 * 109.47185 * 54.92430 * 3 2 1 31 31 H 1.09009 * 110.37099 * 23.78919 * 6 4 2 32 32 H 1.09000 * 110.37526 * 261.45425 * 6 4 2 33 33 H 1.09001 * 110.37484 * 159.33902 * 8 7 6 34 34 H 1.09001 * 110.37380 * 281.68636 * 8 7 6 35 35 H 1.00900 * 110.99637 * 161.10864 * 11 9 8 36 36 H 1.09007 * 109.46976 * 299.99480 * 12 11 9 37 37 H 1.08993 * 109.47107 * 59.99957 * 12 11 9 38 38 H 1.08993 * 109.46979 * 300.00151 * 13 12 11 39 39 H 1.09004 * 109.46559 * 59.99979 * 13 12 11 40 40 H 1.09007 * 109.47519 * 300.00067 * 14 13 12 41 41 H 1.09003 * 109.47094 * 60.00041 * 14 13 12 42 42 H 1.09001 * 109.47097 * 300.00165 * 15 14 13 43 43 H 1.08993 * 109.47201 * 60.00076 * 15 14 13 44 44 H 0.97001 * 119.99981 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1261 -0.6550 1.3129 6 6 1.3864 -0.1325 2.5190 7 8 1.1685 -1.2692 3.3828 8 6 0.7134 -2.3274 2.5117 9 6 1.5871 -2.1984 1.2442 10 1 2.4481 -2.8643 1.3045 11 7 0.7957 -2.4902 0.0416 12 6 0.5519 -3.9327 -0.0911 13 6 -0.2739 -4.1966 -1.3519 14 6 -0.5272 -5.6990 -1.4904 15 6 -1.3524 -5.9629 -2.7515 16 6 -1.6025 -7.4428 -2.8876 17 1 -1.2116 -8.1267 -2.1489 18 6 -2.3304 -7.9236 -3.9553 19 7 -2.8069 -7.0907 -4.8547 20 14 -2.6397 -9.7580 -4.1244 21 1 -3.9001 -10.1141 -3.4245 22 1 -2.7557 -10.1099 -5.5626 23 1 -1.5093 -10.5084 -3.5209 24 1 -0.3633 0.3693 -0.9590 25 1 -0.3632 -1.0153 0.1597 26 1 -0.3633 0.6458 0.7993 27 1 1.8934 -0.5138 -0.8900 28 1 3.1262 1.4439 0.0909 29 1 1.7527 1.9295 -0.9319 30 1 1.6043 1.9819 0.8411 31 1 0.4375 0.3434 2.2714 32 1 2.0577 0.5825 2.9947 33 1 0.8678 -3.2987 2.9818 34 1 -0.3387 -2.1881 2.2630 35 1 1.2434 -2.1216 -0.7841 36 1 1.5048 -4.4570 -0.1642 37 1 0.0062 -4.2908 0.7818 38 1 -1.2266 -3.6723 -1.2784 39 1 0.2716 -3.8384 -2.2250 40 1 0.4258 -6.2230 -1.5641 41 1 -1.0724 -6.0576 -0.6173 42 1 -2.3054 -5.4390 -2.6783 43 1 -0.8069 -5.6045 -3.6243 44 1 -3.3193 -7.4290 -5.6057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711078702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:13 Heat of formation + Delta-G solvation = -64.383203 kcal Electronic energy + Delta-G solvation = -19437.839384 eV Core-core repulsion = 16582.403074 eV Total energy + Delta-G solvation = -2855.436310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41883 -36.56593 -35.59544 -33.90975 -32.14089 -29.85950 -28.53627 -27.45069 -26.97234 -24.56087 -23.71637 -21.58008 -21.11418 -20.05739 -18.99648 -16.75193 -16.48618 -16.10578 -15.92356 -15.55976 -14.67195 -14.53063 -14.36388 -13.95251 -13.59850 -13.21947 -12.70494 -12.51331 -12.43584 -12.10394 -11.82120 -11.71995 -11.67564 -11.36228 -11.27442 -11.03576 -10.81929 -10.70953 -10.62822 -10.49380 -10.44635 -10.40945 -9.77792 -9.63757 -9.25993 -9.00470 -8.33055 -8.28889 -5.97787 -4.00002 3.32836 3.38917 3.42300 3.74746 4.15012 4.27120 4.47593 4.55540 4.63223 4.92965 5.00338 5.09460 5.20100 5.23479 5.36142 5.38054 5.43081 5.49962 5.53171 5.62126 5.67610 5.70994 5.75577 5.85500 5.87899 5.95982 6.10600 6.12703 6.20007 6.21682 6.48814 6.59515 6.70601 6.81948 6.94968 7.01994 7.21149 7.30202 7.70969 7.86622 8.03203 8.46067 9.07543 9.63909 11.13529 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038483 B = 0.003311 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.416230 B = 8454.786554 C = 8920.120694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.116 4.116 5 H 0.079 0.921 6 C 0.048 3.952 7 O -0.379 6.379 8 C 0.053 3.947 9 C 0.055 3.945 10 H 0.053 0.947 11 N -0.671 5.671 12 C 0.051 3.949 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.046 0.954 25 H 0.115 0.885 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.347 0.653 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 15.771 12.253 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.098 4.098 3 C -0.207 4.207 4 C -0.135 4.135 5 H 0.097 0.903 6 C -0.029 4.029 7 O -0.297 6.297 8 C -0.024 4.024 9 C -0.056 4.056 10 H 0.071 0.929 11 N -0.305 5.305 12 C -0.077 4.077 13 C -0.152 4.152 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.065 0.935 25 H 0.133 0.867 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.387 15.881 12.632 22.359 hybrid contribution 0.731 -1.296 -0.759 1.670 sum 10.118 14.585 11.874 21.356 Atomic orbital electron populations 1.22539 0.93931 1.06328 1.00540 1.20937 0.97430 0.95034 0.96387 1.21906 1.00537 0.96417 1.01845 1.22690 1.00287 0.94143 0.96370 0.90258 1.23601 1.00332 0.89529 0.89448 1.89102 1.87452 1.22017 1.31150 1.23496 0.98579 0.91337 0.88975 1.22880 0.94901 0.95659 0.92159 0.92896 1.60991 1.49684 1.14809 1.05024 1.22204 0.98774 0.86753 1.00013 1.21627 0.99709 0.98687 0.95224 1.21589 1.00020 0.92347 1.00761 1.19088 0.94698 0.96326 0.91478 1.21290 1.33231 0.92885 1.08473 0.92789 1.25034 0.95884 0.97703 0.95907 1.69967 1.36473 1.34197 1.12913 0.86615 0.78603 0.85734 0.77161 1.20666 1.21245 1.19919 0.93483 0.86678 0.93831 0.91174 0.93086 0.92563 0.92786 0.91064 0.89748 0.89493 0.90827 0.83204 0.95370 0.91163 0.91597 0.92777 0.93716 0.93434 0.96609 0.96762 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.10 37.16 0.30 -1.41 16 2 C -0.08 -0.67 2.22 -90.62 -0.20 -0.87 16 3 C -0.15 -1.11 8.97 37.16 0.33 -0.78 16 4 C -0.12 -1.04 2.95 -89.06 -0.26 -1.30 16 5 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 6 C 0.05 0.45 6.28 37.93 0.24 0.69 16 7 O -0.38 -4.52 11.65 -35.23 -0.41 -4.93 16 8 C 0.05 0.58 6.69 37.94 0.25 0.84 16 9 C 0.05 0.56 3.13 -66.14 -0.21 0.35 16 10 H 0.05 0.56 8.07 -51.92 -0.42 0.14 16 11 N -0.67 -7.38 2.93 -105.07 -0.31 -7.68 16 12 C 0.05 0.67 5.53 -3.82 -0.02 0.65 16 13 C -0.11 -1.86 5.48 -26.73 -0.15 -2.01 16 14 C -0.11 -2.21 5.15 -26.74 -0.14 -2.35 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.12 1.29 5.09 -51.93 -0.26 1.03 16 26 H 0.04 0.40 6.25 -51.93 -0.32 0.08 16 27 H 0.07 0.61 6.59 -51.93 -0.34 0.27 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.38 7.67 -51.93 -0.40 -0.01 16 31 H 0.07 0.67 5.50 -51.92 -0.29 0.38 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.35 3.65 6.26 -39.29 -0.25 3.41 16 36 H 0.03 0.37 8.13 -51.92 -0.42 -0.05 16 37 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -29.91 335.80 -8.48 -38.39 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.13 Total: -1.65 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -0.40 Total: -19.51 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.43 Total: -34.17 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.41 Total: -4.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.91 -8.48 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.993 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds