Wall clock time and date at job start Mon Mar 30 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.52995 * 109.47403 * 119.99993 * 2 1 3 5 5 H 1.08994 * 110.56739 * 185.01759 * 4 2 1 6 6 C 1.54473 * 110.51377 * 307.69928 * 4 2 1 7 7 O 1.44420 * 104.80601 * 142.61909 * 6 4 2 8 8 C 1.44420 * 105.27944 * 319.48756 * 7 6 4 9 9 C 1.54486 * 104.79902 * 40.50876 * 8 7 6 10 10 H 1.09007 * 110.50796 * 94.80396 * 9 8 7 11 11 N 1.46894 * 110.51098 * 217.37344 * 9 8 7 12 12 C 1.46896 * 111.00403 * 285.06823 * 11 9 8 13 13 C 1.53007 * 109.47291 * 179.97438 * 12 11 9 14 14 C 1.52991 * 109.47238 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47270 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47103 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00351 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99603 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00376 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99569 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47354 * 90.00240 * 20 18 16 22 22 H 1.48509 * 109.46828 * 209.99804 * 20 18 16 23 23 H 1.48501 * 109.47505 * 329.99572 * 20 18 16 24 24 H 1.09000 * 109.46981 * 68.93901 * 1 2 3 25 25 H 1.09004 * 109.46530 * 188.93703 * 1 2 3 26 26 H 1.08992 * 109.46961 * 308.93504 * 1 2 3 27 27 H 1.09002 * 109.47359 * 240.00402 * 2 1 3 28 28 H 1.08996 * 109.47317 * 174.92638 * 3 2 1 29 29 H 1.09001 * 109.47416 * 294.92855 * 3 2 1 30 30 H 1.09004 * 109.47185 * 54.92430 * 3 2 1 31 31 H 1.09009 * 110.37099 * 23.78919 * 6 4 2 32 32 H 1.09000 * 110.37526 * 261.45425 * 6 4 2 33 33 H 1.09001 * 110.37484 * 159.33902 * 8 7 6 34 34 H 1.09001 * 110.37380 * 281.68636 * 8 7 6 35 35 H 1.00900 * 110.99637 * 161.10864 * 11 9 8 36 36 H 1.09007 * 109.46976 * 299.99480 * 12 11 9 37 37 H 1.08993 * 109.47107 * 59.99957 * 12 11 9 38 38 H 1.08993 * 109.46979 * 300.00151 * 13 12 11 39 39 H 1.09004 * 109.46559 * 59.99979 * 13 12 11 40 40 H 1.09007 * 109.47519 * 300.00067 * 14 13 12 41 41 H 1.09003 * 109.47094 * 60.00041 * 14 13 12 42 42 H 1.09001 * 109.47097 * 300.00165 * 15 14 13 43 43 H 1.08993 * 109.47201 * 60.00076 * 15 14 13 44 44 H 0.97001 * 119.99981 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1261 -0.6550 1.3129 6 6 1.3864 -0.1325 2.5190 7 8 1.1685 -1.2692 3.3828 8 6 0.7134 -2.3274 2.5117 9 6 1.5871 -2.1984 1.2442 10 1 2.4481 -2.8643 1.3045 11 7 0.7957 -2.4902 0.0416 12 6 0.5519 -3.9327 -0.0911 13 6 -0.2739 -4.1966 -1.3519 14 6 -0.5272 -5.6990 -1.4904 15 6 -1.3524 -5.9629 -2.7515 16 6 -1.6025 -7.4428 -2.8876 17 1 -1.2116 -8.1267 -2.1489 18 6 -2.3304 -7.9236 -3.9553 19 7 -2.8069 -7.0907 -4.8547 20 14 -2.6397 -9.7580 -4.1244 21 1 -3.9001 -10.1141 -3.4245 22 1 -2.7557 -10.1099 -5.5626 23 1 -1.5093 -10.5084 -3.5209 24 1 -0.3633 0.3693 -0.9590 25 1 -0.3632 -1.0153 0.1597 26 1 -0.3633 0.6458 0.7993 27 1 1.8934 -0.5138 -0.8900 28 1 3.1262 1.4439 0.0909 29 1 1.7527 1.9295 -0.9319 30 1 1.6043 1.9819 0.8411 31 1 0.4375 0.3434 2.2714 32 1 2.0577 0.5825 2.9947 33 1 0.8678 -3.2987 2.9818 34 1 -0.3387 -2.1881 2.2630 35 1 1.2434 -2.1216 -0.7841 36 1 1.5048 -4.4570 -0.1642 37 1 0.0062 -4.2908 0.7818 38 1 -1.2266 -3.6723 -1.2784 39 1 0.2716 -3.8384 -2.2250 40 1 0.4258 -6.2230 -1.5641 41 1 -1.0724 -6.0576 -0.6173 42 1 -2.3054 -5.4390 -2.6783 43 1 -0.8069 -5.6045 -3.6243 44 1 -3.3193 -7.4290 -5.6057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711078702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:13 Heat of formation + Delta-G solvation = -81.350843 kcal Electronic energy + Delta-G solvation = -19438.575156 eV Core-core repulsion = 16582.403074 eV Total energy + Delta-G solvation = -2856.172082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22310 -37.64721 -36.61241 -35.51259 -33.89819 -31.08119 -29.56705 -28.55348 -27.86427 -26.09948 -24.71027 -22.96031 -22.05550 -21.67226 -19.77091 -18.43480 -17.56296 -17.23429 -16.85654 -16.56444 -16.35328 -15.89392 -15.36997 -14.86120 -14.60738 -14.32761 -14.16495 -13.89321 -13.43379 -13.34155 -13.16485 -12.86764 -12.63765 -12.56315 -12.47506 -12.32943 -12.23090 -12.06812 -12.02955 -11.52647 -11.45547 -11.35673 -11.28655 -11.26153 -10.94597 -10.58854 -10.54906 -9.18504 -8.19653 -6.30939 1.39679 1.41159 1.52228 2.40982 2.90605 3.13134 3.28823 3.50619 3.80163 3.89101 4.14095 4.16576 4.24398 4.29699 4.36920 4.49475 4.51401 4.58594 4.65316 4.75828 4.81767 4.83294 4.87380 4.92782 4.96334 4.97224 5.06613 5.19621 5.25675 5.28643 5.30842 5.37543 5.38870 5.51415 5.56386 5.75323 5.79486 5.88139 5.89869 6.13143 6.26632 6.41386 6.86911 7.38393 8.92116 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038483 B = 0.003311 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.416230 B = 8454.786554 C = 8920.120694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.109 4.109 5 H 0.090 0.910 6 C 0.045 3.955 7 O -0.397 6.397 8 C 0.052 3.948 9 C 0.057 3.943 10 H 0.055 0.945 11 N -0.667 5.667 12 C 0.063 3.937 13 C -0.103 4.103 14 C -0.097 4.097 15 C 0.023 3.977 16 C -0.545 4.545 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.263 1.263 24 H 0.041 0.959 25 H 0.101 0.899 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.351 0.649 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.050 0.950 42 H -0.011 1.011 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 15.623 13.093 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.094 4.094 3 C -0.205 4.205 4 C -0.128 4.128 5 H 0.109 0.891 6 C -0.032 4.032 7 O -0.316 6.316 8 C -0.025 4.025 9 C -0.054 4.054 10 H 0.073 0.927 11 N -0.302 5.302 12 C -0.065 4.065 13 C -0.141 4.141 14 C -0.136 4.136 15 C -0.014 4.014 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.187 1.187 24 H 0.060 0.940 25 H 0.119 0.881 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.173 0.827 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.475 15.745 13.484 23.226 hybrid contribution 0.372 -1.195 -1.027 1.619 sum 10.847 14.551 12.457 22.013 Atomic orbital electron populations 1.22479 0.94931 1.05349 1.00331 1.20896 0.96460 0.95885 0.96187 1.21878 1.01091 0.95448 1.02039 1.22667 1.00844 0.93047 0.96239 0.89142 1.23735 1.00763 0.89169 0.89501 1.89085 1.87523 1.22838 1.32141 1.23503 0.98241 0.91466 0.89294 1.22869 0.94568 0.96694 0.91222 0.92662 1.60945 1.50326 1.13287 1.05660 1.21960 0.98313 0.88194 0.98062 1.21435 1.00017 0.95586 0.97101 1.21398 0.99032 0.95344 0.97787 1.19021 0.94040 0.95017 0.93353 1.21757 1.33459 0.94262 1.08830 0.92264 1.26009 0.95481 1.03052 0.95465 1.70101 1.37141 1.36634 1.13556 0.85452 0.78924 0.79332 0.77368 1.19754 1.20702 1.18708 0.93965 0.88124 0.93600 0.91184 0.92200 0.92584 0.92410 0.91159 0.88207 0.89125 0.91662 0.82706 0.94858 0.90996 0.92433 0.92830 0.93266 0.93144 0.99237 0.99199 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.10 71.98 0.58 -2.61 16 2 C -0.08 -1.15 2.22 -10.79 -0.02 -1.18 16 3 C -0.15 -1.88 8.97 71.98 0.65 -1.24 16 4 C -0.11 -1.73 2.95 -9.78 -0.03 -1.76 16 5 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 6 C 0.04 0.76 6.28 72.48 0.46 1.22 16 7 O -0.40 -8.96 11.65 -148.98 -1.74 -10.69 16 8 C 0.05 1.08 6.69 72.49 0.48 1.57 16 9 C 0.06 1.07 3.13 45.94 0.14 1.21 16 10 H 0.06 1.04 8.07 -2.38 -0.02 1.03 16 11 N -0.67 -13.83 2.93 -486.32 -1.42 -15.25 16 12 C 0.06 1.58 5.53 86.31 0.48 2.05 16 13 C -0.10 -3.33 5.48 30.59 0.17 -3.16 16 14 C -0.10 -3.95 5.15 30.59 0.16 -3.80 16 15 C 0.02 1.22 4.97 29.85 0.15 1.37 16 16 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 19 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 20 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 24 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 2.18 5.09 -2.39 -0.01 2.17 16 26 H 0.05 0.81 6.25 -2.39 -0.01 0.79 16 27 H 0.07 1.09 6.59 -2.39 -0.02 1.08 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.70 7.67 -2.39 -0.02 0.68 16 31 H 0.07 1.21 5.50 -2.38 -0.01 1.20 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.45 8.06 -2.39 -0.02 1.44 16 35 H 0.35 6.89 6.26 -89.69 -0.56 6.32 16 36 H 0.03 0.81 8.13 -2.38 -0.02 0.79 16 37 H 0.07 1.78 7.67 -2.39 -0.02 1.77 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -63.98 335.80 3.44 -60.54 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.38 Total: 13.39 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.91 Total: -37.33 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.14 Total: -72.60 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.74 Total: -10.69 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.98 3.44 -60.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.812 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds