Wall clock time and date at job start Mon Mar 30 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 C 1.53004 * 109.47384 * 119.99643 * 2 1 3 5 5 H 1.09003 * 110.56388 * 302.68448 * 4 2 1 6 6 C 1.54475 * 110.50736 * 65.35867 * 4 2 1 7 7 O 1.44428 * 104.80101 * 142.62788 * 6 4 2 8 8 C 1.44787 * 105.29325 * 319.45386 * 7 6 4 9 9 C 1.54474 * 104.62782 * 40.53811 * 8 7 6 10 10 H 1.09001 * 110.50922 * 217.27472 * 9 8 7 11 11 N 1.46892 * 110.51193 * 94.70214 * 9 8 7 12 12 C 1.46906 * 111.00346 * 88.30870 * 11 9 8 13 13 C 1.52998 * 109.47410 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46929 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08994 * 109.47208 * 299.99915 * 1 2 3 25 25 H 1.09003 * 109.46717 * 60.00393 * 1 2 3 26 26 H 1.09005 * 109.46424 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47679 * 240.00284 * 2 1 3 28 28 H 1.08997 * 109.47046 * 300.00088 * 3 2 1 29 29 H 1.09009 * 109.47068 * 59.99514 * 3 2 1 30 30 H 1.08996 * 109.47358 * 179.97438 * 3 2 1 31 31 H 1.08999 * 110.37550 * 261.45680 * 6 4 2 32 32 H 1.09000 * 110.37636 * 23.68919 * 6 4 2 33 33 H 1.09008 * 110.42368 * 281.77510 * 8 7 6 34 34 H 1.08995 * 110.48848 * 159.32862 * 8 7 6 35 35 H 1.00899 * 111.00140 * 324.35097 * 11 9 8 36 36 H 1.09004 * 109.47333 * 59.99372 * 12 11 9 37 37 H 1.09006 * 109.46525 * 300.00078 * 12 11 9 38 38 H 1.09000 * 109.46986 * 59.99535 * 13 12 11 39 39 H 1.09002 * 109.46857 * 299.99400 * 13 12 11 40 40 H 1.09000 * 109.47441 * 60.00090 * 14 13 12 41 41 H 1.09002 * 109.47087 * 299.99536 * 14 13 12 42 42 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 43 43 H 1.09006 * 109.47297 * 299.99829 * 15 14 13 44 44 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6481 -0.2496 2.1505 6 6 1.6518 -2.2157 1.2079 7 8 2.7847 -2.9072 1.7774 8 6 3.9504 -2.2356 1.2423 9 6 3.5849 -0.7351 1.2737 10 1 3.9853 -0.2261 0.3969 11 7 4.0859 -0.1089 2.5044 12 6 5.4594 0.3804 2.3247 13 6 5.9458 1.0239 3.6247 14 6 7.3764 1.5329 3.4377 15 6 7.8626 2.1770 4.7375 16 6 9.2721 2.6778 4.5536 17 1 9.7713 2.5491 3.6045 18 6 9.9242 3.3002 5.5967 19 7 9.3164 3.4565 6.7525 20 14 11.6714 3.9203 5.3688 21 1 12.1428 4.5467 6.6301 22 1 12.5589 2.7822 5.0190 23 1 11.7014 4.9256 4.2762 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 0.7588 -2.3926 1.8073 32 1 1.4871 -2.5367 0.1793 33 1 4.1393 -2.5590 0.2186 34 1 4.8219 -2.4270 1.8684 35 1 4.0284 -0.7468 3.2840 36 1 5.4802 1.1189 1.5232 37 1 6.1115 -0.4542 2.0666 38 1 5.9251 0.2851 4.4258 39 1 5.2938 1.8584 3.8831 40 1 7.3975 2.2717 2.6365 41 1 8.0282 0.6982 3.1795 42 1 7.8415 1.4386 5.5391 43 1 7.2108 3.0118 4.9953 44 1 8.4092 3.1342 6.8709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711078707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:16 Heat of formation + Delta-G solvation = -87.412936 kcal Electronic energy + Delta-G solvation = -19148.382191 eV Core-core repulsion = 16291.947237 eV Total energy + Delta-G solvation = -2856.434954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22584 -36.36944 -35.94144 -34.23219 -32.25460 -29.83336 -28.90664 -27.35881 -26.92974 -24.02148 -23.10943 -21.79545 -21.43577 -20.34698 -19.86040 -16.80599 -16.53958 -16.42429 -15.77389 -15.24151 -14.79557 -14.44576 -14.13450 -13.69861 -13.61706 -13.28370 -12.93843 -12.92689 -12.66804 -12.40982 -12.12174 -11.88787 -11.73913 -11.41885 -11.14563 -10.98730 -10.92508 -10.85790 -10.69010 -10.60112 -10.52773 -10.11704 -10.09605 -9.75804 -9.59634 -8.47488 -8.41447 -8.28392 -6.32056 -4.00584 3.45519 3.47863 3.66608 3.70440 3.97417 4.31259 4.54502 4.55834 4.58860 4.75680 4.89444 5.01346 5.06982 5.13130 5.25643 5.33801 5.40439 5.43215 5.45357 5.45698 5.48051 5.58413 5.63259 5.67570 5.80081 5.82237 5.90014 6.04727 6.07456 6.15338 6.19068 6.39879 6.48177 6.70210 6.83224 6.95341 7.11615 7.33360 7.47413 7.60904 8.27562 8.51058 8.93436 9.71971 11.08732 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.003123 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.598518 B = 8963.301073 C = 9302.355093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.109 4.109 5 H 0.096 0.904 6 C 0.047 3.953 7 O -0.375 6.375 8 C 0.013 3.987 9 C 0.059 3.941 10 H 0.093 0.907 11 N -0.678 5.678 12 C 0.059 3.941 13 C -0.116 4.116 14 C -0.102 4.102 15 C 0.008 3.992 16 C -0.602 4.602 17 H 0.047 0.953 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 1.069 2.931 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.344 0.656 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.005 0.995 43 H 0.006 0.994 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.325 -9.791 -14.880 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.128 4.128 5 H 0.114 0.886 6 C -0.030 4.030 7 O -0.293 6.293 8 C -0.066 4.066 9 C -0.052 4.052 10 H 0.111 0.889 11 N -0.308 5.308 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.029 4.029 16 C -0.641 4.641 17 H 0.065 0.935 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.897 3.103 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.359 -8.583 -14.084 23.230 hybrid contribution -0.728 -1.494 -0.991 1.935 sum -17.088 -10.077 -15.075 24.915 Atomic orbital electron populations 1.21864 0.95031 1.01622 1.02039 1.21095 0.95773 0.96708 0.96764 1.21842 1.01446 0.95269 1.01708 1.22675 0.94618 0.95572 0.99915 0.88562 1.23541 0.90236 0.90763 0.98457 1.89198 1.14989 1.55944 1.69214 1.24276 0.89883 0.93091 0.99317 1.23033 0.95016 0.92557 0.94634 0.88861 1.60585 1.23081 1.42177 1.04950 1.22109 0.87055 0.98219 0.99597 1.21647 0.98065 1.00237 0.95490 1.21454 0.92883 0.99225 1.00418 1.19217 0.96448 0.94929 0.92306 1.22094 0.99691 1.41797 1.00469 0.93454 1.25862 1.05372 0.95013 0.92841 1.70777 1.14932 1.44775 1.24623 0.83553 0.74661 0.76330 0.75757 1.20765 1.21494 1.21474 0.92385 0.92624 0.92778 0.91458 0.93040 0.92211 0.92323 0.89211 0.92419 0.92128 0.89148 0.83675 0.91221 0.95527 0.92759 0.91676 0.93293 0.93511 0.97654 0.97525 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.03 37.16 0.34 -0.65 16 2 C -0.08 -0.65 2.25 -90.62 -0.20 -0.86 16 3 C -0.15 -1.26 8.94 37.16 0.33 -0.92 16 4 C -0.11 -0.98 2.47 -89.05 -0.22 -1.20 16 5 H 0.10 0.98 7.97 -51.93 -0.41 0.57 16 6 C 0.05 0.42 6.27 37.93 0.24 0.65 16 7 O -0.37 -4.37 11.66 -35.23 -0.41 -4.78 16 8 C 0.01 0.13 7.10 37.93 0.27 0.40 16 9 C 0.06 0.60 2.53 -66.15 -0.17 0.43 16 10 H 0.09 0.93 6.14 -51.93 -0.32 0.61 16 11 N -0.68 -8.22 6.19 -105.07 -0.65 -8.87 16 12 C 0.06 0.81 5.54 -3.82 -0.02 0.79 16 13 C -0.12 -1.98 5.47 -26.73 -0.15 -2.13 16 14 C -0.10 -2.13 5.15 -26.73 -0.14 -2.27 16 15 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 16 C -0.60 -17.71 9.11 -34.44 -0.31 -18.02 16 17 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 18 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 19 N -0.91 -28.79 13.65 55.43 0.76 -28.03 16 20 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.32 7.45 -51.93 -0.39 -0.07 16 27 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.56 6.51 -51.93 -0.34 0.22 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.45 7.82 -51.93 -0.41 0.04 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.09 0.96 7.91 -51.93 -0.41 0.55 16 35 H 0.34 4.24 8.46 -39.29 -0.33 3.91 16 36 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.03 0.36 8.01 -51.93 -0.42 -0.06 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 43 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 44 H 0.27 8.42 7.22 -40.82 -0.29 8.13 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -31.38 345.17 -8.86 -40.23 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.42 Total: -1.09 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -0.25 Total: -23.41 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.11 Total: -36.90 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.41 Total: -4.78 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.38 -8.86 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.180 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds