Wall clock time and date at job start Mon Mar 30 2020 06:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 C 1.53004 * 109.47384 * 119.99643 * 2 1 3 5 5 H 1.09003 * 110.56388 * 302.68448 * 4 2 1 6 6 C 1.54475 * 110.50736 * 65.35867 * 4 2 1 7 7 O 1.44428 * 104.80101 * 142.62788 * 6 4 2 8 8 C 1.44787 * 105.29325 * 319.45386 * 7 6 4 9 9 C 1.54474 * 104.62782 * 40.53811 * 8 7 6 10 10 H 1.09001 * 110.50922 * 217.27472 * 9 8 7 11 11 N 1.46892 * 110.51193 * 94.70214 * 9 8 7 12 12 C 1.46906 * 111.00346 * 88.30870 * 11 9 8 13 13 C 1.52998 * 109.47410 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46929 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08994 * 109.47208 * 299.99915 * 1 2 3 25 25 H 1.09003 * 109.46717 * 60.00393 * 1 2 3 26 26 H 1.09005 * 109.46424 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47679 * 240.00284 * 2 1 3 28 28 H 1.08997 * 109.47046 * 300.00088 * 3 2 1 29 29 H 1.09009 * 109.47068 * 59.99514 * 3 2 1 30 30 H 1.08996 * 109.47358 * 179.97438 * 3 2 1 31 31 H 1.08999 * 110.37550 * 261.45680 * 6 4 2 32 32 H 1.09000 * 110.37636 * 23.68919 * 6 4 2 33 33 H 1.09008 * 110.42368 * 281.77510 * 8 7 6 34 34 H 1.08995 * 110.48848 * 159.32862 * 8 7 6 35 35 H 1.00899 * 111.00140 * 324.35097 * 11 9 8 36 36 H 1.09004 * 109.47333 * 59.99372 * 12 11 9 37 37 H 1.09006 * 109.46525 * 300.00078 * 12 11 9 38 38 H 1.09000 * 109.46986 * 59.99535 * 13 12 11 39 39 H 1.09002 * 109.46857 * 299.99400 * 13 12 11 40 40 H 1.09000 * 109.47441 * 60.00090 * 14 13 12 41 41 H 1.09002 * 109.47087 * 299.99536 * 14 13 12 42 42 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 43 43 H 1.09006 * 109.47297 * 299.99829 * 15 14 13 44 44 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6481 -0.2496 2.1505 6 6 1.6518 -2.2157 1.2079 7 8 2.7847 -2.9072 1.7774 8 6 3.9504 -2.2356 1.2423 9 6 3.5849 -0.7351 1.2737 10 1 3.9853 -0.2261 0.3969 11 7 4.0859 -0.1089 2.5044 12 6 5.4594 0.3804 2.3247 13 6 5.9458 1.0239 3.6247 14 6 7.3764 1.5329 3.4377 15 6 7.8626 2.1770 4.7375 16 6 9.2721 2.6778 4.5536 17 1 9.7713 2.5491 3.6045 18 6 9.9242 3.3002 5.5967 19 7 9.3164 3.4565 6.7525 20 14 11.6714 3.9203 5.3688 21 1 12.1428 4.5467 6.6301 22 1 12.5589 2.7822 5.0190 23 1 11.7014 4.9256 4.2762 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 0.7588 -2.3926 1.8073 32 1 1.4871 -2.5367 0.1793 33 1 4.1393 -2.5590 0.2186 34 1 4.8219 -2.4270 1.8684 35 1 4.0284 -0.7468 3.2840 36 1 5.4802 1.1189 1.5232 37 1 6.1115 -0.4542 2.0666 38 1 5.9251 0.2851 4.4258 39 1 5.2938 1.8584 3.8831 40 1 7.3975 2.2717 2.6365 41 1 8.0282 0.6982 3.1795 42 1 7.8415 1.4386 5.5391 43 1 7.2108 3.0118 4.9953 44 1 8.4092 3.1342 6.8709 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711078707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:15 Heat of formation + Delta-G solvation = -107.106283 kcal Electronic energy + Delta-G solvation = -19149.236158 eV Core-core repulsion = 16291.947237 eV Total energy + Delta-G solvation = -2857.288922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00918 -37.66327 -36.65849 -35.97595 -34.00778 -31.00544 -29.82428 -28.46397 -27.86229 -25.83950 -23.93431 -23.28483 -22.37358 -21.87620 -20.64708 -18.88645 -17.50337 -17.27964 -16.63244 -16.38965 -15.77274 -15.65045 -15.51923 -15.04415 -14.99320 -14.43737 -14.21406 -13.97624 -13.79498 -13.45705 -13.08746 -12.93051 -12.84889 -12.61209 -12.45176 -12.30003 -12.19190 -12.11140 -11.95776 -11.70378 -11.55187 -11.48993 -11.38833 -11.34719 -10.89857 -10.62748 -10.55664 -9.36951 -8.70828 -6.41335 1.51327 1.60450 1.79879 2.56332 2.96551 3.02898 3.14274 3.57742 3.78605 3.85928 3.99144 4.08217 4.13965 4.16989 4.35597 4.37811 4.40129 4.48572 4.52892 4.59991 4.69786 4.71631 4.79681 4.82220 4.83416 4.88350 4.99339 5.05149 5.06027 5.09553 5.18035 5.20128 5.28894 5.44933 5.46395 5.52067 5.55373 5.70868 5.99554 6.09512 6.17580 6.33836 6.56304 7.41762 8.69988 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.003123 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.598518 B = 8963.301073 C = 9302.355093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.102 4.102 5 H 0.082 0.918 6 C 0.046 3.954 7 O -0.398 6.398 8 C 0.014 3.986 9 C 0.059 3.941 10 H 0.099 0.901 11 N -0.682 5.682 12 C 0.072 3.928 13 C -0.106 4.106 14 C -0.090 4.090 15 C 0.007 3.993 16 C -0.622 4.622 17 H 0.052 0.948 18 C -0.043 4.043 19 N -0.939 5.939 20 Si 1.119 2.881 21 H -0.283 1.283 22 H -0.268 1.268 23 H -0.267 1.267 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.343 0.657 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.050 0.950 42 H -0.015 1.015 43 H -0.014 1.014 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.381 -10.337 -16.869 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.202 4.202 4 C -0.122 4.122 5 H 0.100 0.900 6 C -0.030 4.030 7 O -0.318 6.318 8 C -0.065 4.065 9 C -0.051 4.051 10 H 0.117 0.883 11 N -0.312 5.312 12 C -0.057 4.057 13 C -0.144 4.144 14 C -0.128 4.128 15 C -0.030 4.030 16 C -0.660 4.660 17 H 0.070 0.930 18 C -0.240 4.240 19 N -0.577 5.577 20 Si 0.940 3.060 21 H -0.208 1.208 22 H -0.193 1.193 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.162 0.838 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.447 -9.145 -16.096 24.763 hybrid contribution -0.770 -1.334 -0.359 1.582 sum -17.217 -10.479 -16.455 26.020 Atomic orbital electron populations 1.21848 0.94083 1.02307 1.02136 1.21072 0.96517 0.95884 0.96375 1.21827 1.00747 0.96000 1.01580 1.22605 0.93624 0.95919 1.00010 0.89987 1.23676 0.89738 0.90176 0.99422 1.89175 1.16007 1.56642 1.69943 1.24293 0.89406 0.92816 0.99951 1.23086 0.95783 0.92551 0.93700 0.88308 1.60551 1.21943 1.42757 1.05949 1.21875 0.88091 0.98356 0.97404 1.21464 0.95462 0.99968 0.97471 1.21283 0.95220 0.99019 0.97325 1.19198 0.95333 0.93980 0.94532 1.22567 1.01041 1.41670 1.00714 0.93000 1.27547 1.09456 0.94768 0.92203 1.70919 1.14549 1.46296 1.25898 0.82923 0.69833 0.76963 0.76310 1.20827 1.19260 1.19233 0.92966 0.91892 0.91814 0.90435 0.92050 0.93470 0.93327 0.88410 0.90831 0.90584 0.89839 0.83838 0.90803 0.94762 0.93021 0.92623 0.93000 0.93111 0.99635 0.99601 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.03 71.98 0.65 -1.00 16 2 C -0.08 -1.07 2.25 -10.79 -0.02 -1.10 16 3 C -0.14 -2.30 8.94 71.98 0.64 -1.66 16 4 C -0.10 -1.68 2.47 -9.78 -0.02 -1.71 16 5 H 0.08 1.61 7.97 -2.39 -0.02 1.59 16 6 C 0.05 0.73 6.27 72.48 0.45 1.19 16 7 O -0.40 -8.71 11.66 -148.98 -1.74 -10.45 16 8 C 0.01 0.26 7.10 72.48 0.51 0.77 16 9 C 0.06 1.12 2.53 45.93 0.12 1.23 16 10 H 0.10 1.77 6.14 -2.39 -0.01 1.76 16 11 N -0.68 -15.90 6.19 -486.35 -3.01 -18.91 16 12 C 0.07 1.88 5.54 86.30 0.48 2.36 16 13 C -0.11 -3.58 5.47 30.59 0.17 -3.41 16 14 C -0.09 -3.77 5.15 30.59 0.16 -3.62 16 15 C 0.01 0.36 4.28 29.85 0.13 0.49 16 16 C -0.62 -36.80 9.11 25.60 0.23 -36.57 16 17 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 18 C -0.04 -2.57 5.46 84.65 0.46 -2.10 16 19 N -0.94 -60.19 13.65 21.45 0.29 -59.90 16 20 Si 1.12 51.19 29.90 68.60 2.05 53.24 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.60 7.45 -2.38 -0.02 0.58 16 27 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 0.86 6.51 -2.39 -0.02 0.85 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 0.94 7.82 -2.39 -0.02 0.92 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.68 7.91 -2.39 -0.02 1.66 16 35 H 0.34 8.23 8.46 -89.69 -0.76 7.47 16 36 H 0.07 1.90 8.08 -2.38 -0.02 1.88 16 37 H 0.03 0.86 8.01 -2.38 -0.02 0.84 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16 43 H -0.01 -0.83 8.01 -2.38 -0.02 -0.85 16 44 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 Total: -1.00 -67.45 345.17 1.83 -65.62 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.27 Total: 15.52 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 3.96 Total: -45.12 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -2.72 Total: -78.81 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.74 Total: -10.45 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -67.45 1.83 -65.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.488 kcal (2) G-P(sol) polarization free energy of solvation -67.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds