Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47315 * 2 1 4 4 C 1.52995 * 109.47201 * 120.00616 * 2 1 3 5 5 H 1.08998 * 110.53957 * 297.38006 * 4 2 1 6 6 C 1.54099 * 110.48934 * 174.76480 * 4 2 1 7 7 O 1.43748 * 107.29266 * 243.35527 * 6 4 2 8 8 C 1.44374 * 106.97554 * 333.47764 * 7 6 4 9 9 C 1.54813 * 110.49036 * 59.99678 * 4 2 1 10 10 H 1.08995 * 110.93919 * 21.34208 * 9 4 2 11 11 N 1.46906 * 110.90595 * 257.75595 * 9 4 2 12 12 C 1.46901 * 110.99793 * 160.84160 * 11 9 4 13 13 C 1.53000 * 109.46769 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00310 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00473 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47233 * 120.00015 * 20 18 16 23 23 H 1.48504 * 109.47158 * 239.99855 * 20 18 16 24 24 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46606 * 299.99784 * 1 2 3 26 26 H 1.08993 * 109.47456 * 59.99570 * 1 2 3 27 27 H 1.09006 * 109.46606 * 240.00216 * 2 1 3 28 28 H 1.08998 * 109.47314 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47610 * 300.00243 * 3 2 1 30 30 H 1.09006 * 109.47107 * 60.00523 * 3 2 1 31 31 H 1.08994 * 109.88521 * 123.92524 * 6 4 2 32 32 H 1.09004 * 109.87854 * 2.77403 * 6 4 2 33 33 H 1.08996 * 110.62579 * 281.56561 * 8 7 6 34 34 H 1.09001 * 110.75744 * 158.62672 * 8 7 6 35 35 H 1.00899 * 110.99995 * 36.88558 * 11 9 4 36 36 H 1.09002 * 109.47401 * 59.99808 * 12 11 9 37 37 H 1.09001 * 109.46874 * 299.99821 * 12 11 9 38 38 H 1.09001 * 109.47194 * 299.99524 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99697 * 13 12 11 40 40 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 41 41 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 42 42 H 1.08992 * 109.47098 * 299.99158 * 15 14 13 43 43 H 1.09001 * 109.47583 * 60.00267 * 15 14 13 44 44 H 0.96998 * 120.00187 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.7250 -0.1950 2.1501 6 6 3.5751 -0.8501 1.2087 7 8 3.8851 -2.2530 1.1614 8 6 2.7847 -2.9491 1.7849 9 6 1.5370 -2.1853 1.2729 10 1 1.2604 -2.5184 0.2726 11 7 0.4106 -2.3375 2.2035 12 6 -0.3521 -3.5586 1.9117 13 6 -1.5145 -3.6820 2.8988 14 6 -2.3085 -4.9542 2.5953 15 6 -3.4712 -5.0772 3.5820 16 6 -4.2537 -6.3299 3.2826 17 1 -3.9515 -6.9742 2.4701 18 6 -5.3546 -6.6543 4.0466 19 7 -5.7217 -5.8707 5.0370 20 14 -6.3240 -8.2074 3.6760 21 1 -5.7092 -8.9112 2.5219 22 1 -6.3062 -9.0975 4.8646 23 1 -7.7271 -7.8486 3.3473 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 4.0082 -0.4048 2.1043 32 1 3.9654 -0.3541 0.3199 33 1 2.8554 -2.8846 2.8707 34 1 2.7553 -3.9906 1.4647 35 1 -0.1869 -1.5247 2.1841 36 1 0.3005 -4.4264 2.0079 37 1 -0.7427 -3.5087 0.8953 38 1 -1.1242 -3.7317 3.9154 39 1 -2.1669 -2.8143 2.8022 40 1 -2.6988 -4.9049 1.5787 41 1 -1.6557 -5.8217 2.6922 42 1 -3.0814 -5.1263 4.5986 43 1 -4.1239 -4.2097 3.4846 44 1 -6.4964 -6.0986 5.5743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711078711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -83.997234 kcal Electronic energy + Delta-G solvation = -19144.621273 eV Core-core repulsion = 16288.334435 eV Total energy + Delta-G solvation = -2856.286838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17796 -36.50317 -35.83961 -33.99077 -32.17155 -29.95781 -28.94231 -27.36582 -27.23293 -24.32975 -23.12387 -21.64229 -21.18193 -20.13567 -19.87556 -16.75552 -16.46788 -16.14263 -15.62663 -15.21675 -14.78811 -14.49454 -14.39627 -14.13875 -13.75800 -13.10628 -12.96698 -12.73971 -12.51044 -12.38501 -12.24414 -11.76480 -11.65099 -11.53351 -11.25420 -11.02858 -10.89889 -10.84315 -10.71549 -10.55196 -10.44193 -10.41999 -9.82144 -9.63484 -9.25754 -8.99030 -8.48892 -8.32583 -5.97618 -3.99765 3.31985 3.39330 3.43645 3.68702 4.10863 4.16835 4.43942 4.48623 4.55642 4.77240 4.95884 5.03245 5.12041 5.15878 5.33561 5.34277 5.36902 5.38544 5.47710 5.50030 5.55037 5.57096 5.67100 5.72652 5.77448 5.84528 5.88213 5.96299 6.03908 6.14020 6.22880 6.49649 6.65534 6.81432 6.95702 7.02610 7.21823 7.32906 7.71541 7.87008 8.03499 8.46355 9.07984 9.64198 11.13769 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.003135 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.537839 B = 8929.044615 C = 9332.167225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.149 4.149 4 C -0.121 4.121 5 H 0.093 0.907 6 C 0.054 3.946 7 O -0.381 6.381 8 C 0.055 3.945 9 C 0.058 3.942 10 H 0.060 0.940 11 N -0.679 5.679 12 C 0.058 3.942 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.344 0.656 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.835 13.631 -9.471 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.140 4.140 5 H 0.111 0.889 6 C -0.023 4.023 7 O -0.300 6.300 8 C -0.022 4.022 9 C -0.053 4.053 10 H 0.078 0.922 11 N -0.312 5.312 12 C -0.071 4.071 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.284 13.259 -8.940 23.548 hybrid contribution -1.362 -0.486 -0.809 1.657 sum 15.922 12.773 -9.750 22.622 Atomic orbital electron populations 1.21912 0.94837 1.02009 1.02205 1.21174 0.96097 0.96207 0.97250 1.21887 1.00990 0.95691 1.02066 1.22766 0.95669 0.95976 0.99573 0.88909 1.23187 0.93957 0.83453 1.01711 1.88862 1.42655 1.17687 1.80748 1.23574 0.84025 0.96458 0.98149 1.23114 0.92804 0.94310 0.95027 0.92200 1.60538 1.12372 1.06228 1.52049 1.22149 0.95345 0.91999 0.97567 1.21637 0.95165 0.99545 0.98979 1.21590 0.98089 0.94695 1.00330 1.19093 0.91829 0.96723 0.93974 1.21331 1.11390 1.07836 1.15217 0.92729 1.25038 0.97497 0.96872 0.95168 1.69980 1.26460 1.37576 1.19548 0.86557 0.79909 0.83448 0.78213 1.19764 1.21015 1.21044 0.92643 0.92244 0.92373 0.90967 0.92536 0.92511 0.92422 0.92369 0.89853 0.90986 0.89227 0.83710 0.91182 0.95431 0.91591 0.92763 0.93696 0.93410 0.96598 0.96752 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.20 37.16 0.30 -0.93 16 2 C -0.09 -0.69 2.19 -90.62 -0.20 -0.88 16 3 C -0.15 -0.96 9.00 37.15 0.33 -0.63 16 4 C -0.12 -1.06 2.15 -89.09 -0.19 -1.25 16 5 H 0.09 0.82 8.02 -51.93 -0.42 0.41 16 6 C 0.05 0.49 6.92 37.73 0.26 0.75 16 7 O -0.38 -4.54 11.52 -35.23 -0.41 -4.95 16 8 C 0.06 0.62 7.36 38.21 0.28 0.90 16 9 C 0.06 0.61 2.02 -65.70 -0.13 0.48 16 10 H 0.06 0.67 7.31 -51.93 -0.38 0.29 16 11 N -0.68 -8.02 6.23 -104.60 -0.65 -8.67 16 12 C 0.06 0.79 5.55 -3.82 -0.02 0.77 16 13 C -0.12 -1.93 5.47 -26.73 -0.15 -2.08 16 14 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 17 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.05 0.51 6.65 -51.93 -0.35 0.17 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.33 6.78 -51.93 -0.35 -0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.66 6.62 -51.93 -0.34 0.32 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.34 3.83 7.33 -39.29 -0.29 3.54 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -30.36 344.43 -8.78 -39.13 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.43 Total: -2.39 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.20 Total: -18.61 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.08 Total: -35.25 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.41 Total: -4.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.36 -8.78 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.862 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds