Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47315 * 2 1 4 4 C 1.52995 * 109.47201 * 120.00616 * 2 1 3 5 5 H 1.08998 * 110.53957 * 297.38006 * 4 2 1 6 6 C 1.54099 * 110.48934 * 174.76480 * 4 2 1 7 7 O 1.43748 * 107.29266 * 243.35527 * 6 4 2 8 8 C 1.44374 * 106.97554 * 333.47764 * 7 6 4 9 9 C 1.54813 * 110.49036 * 59.99678 * 4 2 1 10 10 H 1.08995 * 110.93919 * 21.34208 * 9 4 2 11 11 N 1.46906 * 110.90595 * 257.75595 * 9 4 2 12 12 C 1.46901 * 110.99793 * 160.84160 * 11 9 4 13 13 C 1.53000 * 109.46769 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00310 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99776 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00473 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47233 * 120.00015 * 20 18 16 23 23 H 1.48504 * 109.47158 * 239.99855 * 20 18 16 24 24 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46606 * 299.99784 * 1 2 3 26 26 H 1.08993 * 109.47456 * 59.99570 * 1 2 3 27 27 H 1.09006 * 109.46606 * 240.00216 * 2 1 3 28 28 H 1.08998 * 109.47314 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47610 * 300.00243 * 3 2 1 30 30 H 1.09006 * 109.47107 * 60.00523 * 3 2 1 31 31 H 1.08994 * 109.88521 * 123.92524 * 6 4 2 32 32 H 1.09004 * 109.87854 * 2.77403 * 6 4 2 33 33 H 1.08996 * 110.62579 * 281.56561 * 8 7 6 34 34 H 1.09001 * 110.75744 * 158.62672 * 8 7 6 35 35 H 1.00899 * 110.99995 * 36.88558 * 11 9 4 36 36 H 1.09002 * 109.47401 * 59.99808 * 12 11 9 37 37 H 1.09001 * 109.46874 * 299.99821 * 12 11 9 38 38 H 1.09001 * 109.47194 * 299.99524 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99697 * 13 12 11 40 40 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 41 41 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 42 42 H 1.08992 * 109.47098 * 299.99158 * 15 14 13 43 43 H 1.09001 * 109.47583 * 60.00267 * 15 14 13 44 44 H 0.96998 * 120.00187 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.7250 -0.1950 2.1501 6 6 3.5751 -0.8501 1.2087 7 8 3.8851 -2.2530 1.1614 8 6 2.7847 -2.9491 1.7849 9 6 1.5370 -2.1853 1.2729 10 1 1.2604 -2.5184 0.2726 11 7 0.4106 -2.3375 2.2035 12 6 -0.3521 -3.5586 1.9117 13 6 -1.5145 -3.6820 2.8988 14 6 -2.3085 -4.9542 2.5953 15 6 -3.4712 -5.0772 3.5820 16 6 -4.2537 -6.3299 3.2826 17 1 -3.9515 -6.9742 2.4701 18 6 -5.3546 -6.6543 4.0466 19 7 -5.7217 -5.8707 5.0370 20 14 -6.3240 -8.2074 3.6760 21 1 -5.7092 -8.9112 2.5219 22 1 -6.3062 -9.0975 4.8646 23 1 -7.7271 -7.8486 3.3473 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 4.0082 -0.4048 2.1043 32 1 3.9654 -0.3541 0.3199 33 1 2.8554 -2.8846 2.8707 34 1 2.7553 -3.9906 1.4647 35 1 -0.1869 -1.5247 2.1841 36 1 0.3005 -4.4264 2.0079 37 1 -0.7427 -3.5087 0.8953 38 1 -1.1242 -3.7317 3.9154 39 1 -2.1669 -2.8143 2.8022 40 1 -2.6988 -4.9049 1.5787 41 1 -1.6557 -5.8217 2.6922 42 1 -3.0814 -5.1263 4.5986 43 1 -4.1239 -4.2097 3.4846 44 1 -6.4964 -6.0986 5.5743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711078711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -102.678226 kcal Electronic energy + Delta-G solvation = -19145.431342 eV Core-core repulsion = 16288.334435 eV Total energy + Delta-G solvation = -2857.096907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98239 -37.65056 -36.69389 -35.65510 -33.96811 -31.15886 -29.90401 -28.63730 -27.95959 -26.05275 -23.92284 -23.07165 -22.15277 -21.61346 -20.74045 -18.44272 -17.60349 -17.20763 -16.72825 -16.50902 -16.05764 -15.77750 -15.37766 -15.09206 -14.67705 -14.46281 -14.20245 -13.71585 -13.65019 -13.45603 -13.40011 -13.03956 -12.89370 -12.70950 -12.47001 -12.32783 -12.22534 -12.15832 -12.04835 -11.54809 -11.52214 -11.43551 -11.35912 -11.28972 -10.95707 -10.63736 -10.56019 -9.45797 -8.20231 -6.31528 1.39401 1.39801 1.53285 2.40625 2.82382 3.12597 3.25935 3.41458 3.73192 3.83732 4.07118 4.11219 4.18479 4.23067 4.34124 4.41103 4.49733 4.55076 4.62467 4.68352 4.76508 4.78973 4.80603 4.84852 4.89541 4.92973 4.94238 5.01595 5.12226 5.23370 5.24526 5.27902 5.35930 5.37725 5.45142 5.55288 5.78231 5.80987 5.87413 6.09217 6.25841 6.39125 6.86338 7.37883 8.91818 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.003135 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.537839 B = 8929.044615 C = 9332.167225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.113 4.113 5 H 0.094 0.906 6 C 0.050 3.950 7 O -0.399 6.399 8 C 0.054 3.946 9 C 0.061 3.939 10 H 0.057 0.943 11 N -0.679 5.679 12 C 0.070 3.930 13 C -0.105 4.105 14 C -0.097 4.097 15 C 0.023 3.977 16 C -0.544 4.544 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.277 1.277 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.349 0.651 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.050 0.950 42 H -0.011 1.011 43 H -0.010 1.010 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.366 13.734 -10.633 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.132 4.132 5 H 0.112 0.888 6 C -0.026 4.026 7 O -0.318 6.318 8 C -0.024 4.024 9 C -0.049 4.049 10 H 0.075 0.925 11 N -0.313 5.313 12 C -0.059 4.059 13 C -0.143 4.143 14 C -0.135 4.135 15 C -0.014 4.014 16 C -0.582 4.582 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.169 0.831 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.831 13.375 -10.112 24.477 hybrid contribution -1.513 -0.476 -0.421 1.641 sum 16.318 12.899 -10.534 23.316 Atomic orbital electron populations 1.21907 0.95132 1.01267 1.02604 1.21136 0.95764 0.96940 0.96441 1.21867 1.01450 0.94635 1.02438 1.22716 0.95431 0.94811 1.00226 0.88771 1.23356 0.94151 0.82310 1.02829 1.88842 1.43036 1.19104 1.80838 1.23567 0.84293 0.96689 0.97807 1.23078 0.91917 0.95580 0.94365 0.92461 1.60457 1.12495 1.05736 1.52600 1.21911 0.94281 0.93034 0.96664 1.21451 0.95880 0.97510 0.99411 1.21399 0.96489 0.96854 0.98803 1.19021 0.93232 0.95075 0.94089 1.21780 1.12106 1.08808 1.15506 0.92260 1.26014 0.98680 1.00524 0.94827 1.70109 1.27151 1.39634 1.20569 0.85391 0.78251 0.78927 0.78430 1.18567 1.20345 1.20280 0.93902 0.92075 0.91790 0.91294 0.91813 0.91978 0.92247 0.91591 0.88480 0.91558 0.89203 0.83146 0.91066 0.94846 0.92502 0.92738 0.93169 0.93117 0.99243 0.99154 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.20 71.98 0.59 -1.65 16 2 C -0.08 -1.15 2.19 -10.80 -0.02 -1.17 16 3 C -0.15 -1.57 9.00 71.98 0.65 -0.92 16 4 C -0.11 -1.80 2.15 -9.80 -0.02 -1.82 16 5 H 0.09 1.50 8.02 -2.39 -0.02 1.48 16 6 C 0.05 0.83 6.92 72.35 0.50 1.33 16 7 O -0.40 -9.04 11.52 -148.98 -1.72 -10.76 16 8 C 0.05 1.16 7.36 72.67 0.53 1.69 16 9 C 0.06 1.21 2.02 46.22 0.09 1.30 16 10 H 0.06 1.20 7.31 -2.39 -0.02 1.18 16 11 N -0.68 -15.26 6.23 -484.85 -3.02 -18.29 16 12 C 0.07 1.84 5.55 86.30 0.48 2.32 16 13 C -0.10 -3.47 5.47 30.59 0.17 -3.30 16 14 C -0.10 -4.00 5.15 30.59 0.16 -3.84 16 15 C 0.02 1.24 4.97 29.85 0.15 1.38 16 16 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 17 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 19 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 20 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H 0.04 0.74 6.65 -2.39 -0.02 0.72 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.06 0.59 6.78 -2.39 -0.02 0.58 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 1.33 6.62 -2.39 -0.02 1.31 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.35 7.32 7.33 -89.69 -0.66 6.66 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.03 0.85 8.09 -2.39 -0.02 0.83 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -64.73 344.43 1.82 -62.91 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.28 Total: 12.56 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.97 Total: -35.77 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -2.74 Total: -75.76 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.72 Total: -10.76 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.73 1.82 -62.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.768 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds