Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 C 1.52993 * 109.47157 * 120.00281 * 2 1 3 5 5 H 1.09001 * 110.56588 * 51.18710 * 4 2 1 6 6 C 1.54489 * 110.50926 * 288.50879 * 4 2 1 7 7 O 1.44426 * 104.79865 * 217.37746 * 6 4 2 8 8 C 1.44419 * 105.27824 * 40.51174 * 7 6 4 9 9 C 1.54482 * 104.80504 * 319.48485 * 8 7 6 10 10 H 1.09000 * 110.50982 * 265.19749 * 9 8 7 11 11 N 1.46895 * 110.50933 * 142.62345 * 9 8 7 12 12 C 1.46894 * 111.00244 * 74.67093 * 11 9 8 13 13 C 1.53006 * 109.47319 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46898 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46898 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47177 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99865 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00097 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46810 * 270.00355 * 20 18 16 22 22 H 1.48501 * 109.46875 * 30.00471 * 20 18 16 23 23 H 1.48501 * 109.46842 * 150.00509 * 20 18 16 24 24 H 1.08998 * 109.46968 * 305.00062 * 1 2 3 25 25 H 1.09002 * 109.46756 * 64.99663 * 1 2 3 26 26 H 1.08996 * 109.46802 * 184.99766 * 1 2 3 27 27 H 1.09000 * 109.46750 * 240.00237 * 2 1 3 28 28 H 1.09002 * 109.47144 * 291.29559 * 3 2 1 29 29 H 1.08997 * 109.47401 * 51.29340 * 3 2 1 30 30 H 1.09003 * 109.46939 * 171.29312 * 3 2 1 31 31 H 1.08998 * 110.36993 * 98.54796 * 6 4 2 32 32 H 1.08995 * 110.46262 * 336.25367 * 6 4 2 33 33 H 1.09002 * 110.37506 * 200.65408 * 8 7 6 34 34 H 1.08999 * 110.46798 * 78.37001 * 8 7 6 35 35 H 1.00902 * 110.99809 * 198.62253 * 11 9 8 36 36 H 1.08996 * 109.47626 * 59.99630 * 12 11 9 37 37 H 1.09005 * 109.47153 * 299.99617 * 12 11 9 38 38 H 1.09004 * 109.47054 * 60.00012 * 13 12 11 39 39 H 1.08990 * 109.47154 * 299.99681 * 13 12 11 40 40 H 1.09004 * 109.46845 * 60.00390 * 14 13 12 41 41 H 1.08990 * 109.47371 * 300.00055 * 14 13 12 42 42 H 1.08996 * 109.46875 * 59.99920 * 15 14 13 43 43 H 1.09005 * 109.46895 * 300.00526 * 15 14 13 44 44 H 0.96994 * 120.00178 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.5646 -1.6971 1.3488 6 6 1.7874 0.1352 2.5098 7 8 2.9477 -0.0819 3.3419 8 6 4.0712 -0.0867 2.4345 9 6 3.5771 -0.8706 1.1985 10 1 3.8636 -1.9197 1.2720 11 7 4.1115 -0.2776 -0.0346 12 6 5.5339 -0.6040 -0.2023 13 6 6.0535 0.0290 -1.4947 14 6 7.5351 -0.3106 -1.6690 15 6 8.0546 0.3219 -2.9618 16 6 9.5137 -0.0130 -3.1338 17 1 10.0199 -0.6170 -2.3952 18 6 10.2024 0.4507 -4.2346 19 7 9.5859 1.1857 -5.1342 20 14 12.0114 0.0361 -4.4476 21 1 12.8391 1.0841 -3.7982 22 1 12.2951 -1.2790 -3.8189 23 1 12.3378 -0.0263 -5.8949 24 1 -0.3633 0.5894 0.8418 25 1 -0.3633 0.4344 -0.9314 26 1 -0.3633 -1.0237 0.0895 27 1 1.8933 -0.5138 -0.8900 28 1 1.8093 1.9095 -0.9575 29 1 1.5553 1.9993 0.8019 30 1 3.1189 1.4464 0.1556 31 1 0.8853 -0.1999 3.0216 32 1 1.7029 1.1889 2.2439 33 1 4.9236 -0.5921 2.8885 34 1 4.3400 0.9321 2.1552 35 1 3.5761 -0.5703 -0.8381 36 1 5.6547 -1.6860 -0.2540 37 1 6.0983 -0.2155 0.6454 38 1 5.9327 1.1111 -1.4434 39 1 5.4892 -0.3598 -2.3422 40 1 7.6563 -1.3926 -1.7202 41 1 8.0992 0.0786 -0.8215 42 1 7.9333 1.4039 -2.9111 43 1 7.4903 -0.0676 -3.8091 44 1 8.6467 1.4013 -5.0235 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711078714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = -69.795115 kcal Electronic energy + Delta-G solvation = -19455.077614 eV Core-core repulsion = 16599.406626 eV Total energy + Delta-G solvation = -2855.670988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43580 -36.60267 -35.69004 -34.15446 -32.23654 -29.81852 -28.49832 -27.41737 -26.92740 -24.42356 -23.59889 -21.70740 -21.19778 -20.31699 -19.03476 -16.80331 -16.70528 -16.37956 -15.95179 -15.60035 -14.72474 -14.52204 -14.01041 -13.72930 -13.66618 -13.37889 -12.84096 -12.74273 -12.55633 -12.33412 -11.88531 -11.83431 -11.69824 -11.39580 -11.09985 -10.99662 -10.86219 -10.74982 -10.64216 -10.56226 -10.52403 -10.11088 -9.80629 -9.77570 -9.62221 -8.48657 -8.41274 -8.29242 -6.33241 -4.01808 3.44689 3.48457 3.64178 3.71237 4.10195 4.23717 4.51237 4.57105 4.59120 4.88779 4.95361 5.05388 5.15530 5.18539 5.29532 5.36641 5.44264 5.45498 5.48453 5.58263 5.63364 5.66575 5.72099 5.79508 5.80437 5.90606 6.01813 6.04978 6.11175 6.14629 6.37606 6.52845 6.59813 6.68585 6.80955 6.92124 7.08186 7.25561 7.45762 7.59147 8.26550 8.50363 8.92449 9.70687 11.07581 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.003318 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.057622 B = 8435.989384 C = 8900.885363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.166 4.166 4 C -0.116 4.116 5 H 0.080 0.920 6 C 0.046 3.954 7 O -0.378 6.378 8 C 0.053 3.947 9 C 0.055 3.945 10 H 0.053 0.947 11 N -0.674 5.674 12 C 0.053 3.947 13 C -0.115 4.115 14 C -0.102 4.102 15 C 0.008 3.992 16 C -0.602 4.602 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 1.071 2.929 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.284 1.284 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.346 0.654 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.007 0.993 43 H 0.005 0.995 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 -3.234 13.362 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.223 4.223 4 C -0.135 4.135 5 H 0.098 0.902 6 C -0.031 4.031 7 O -0.297 6.297 8 C -0.024 4.024 9 C -0.055 4.055 10 H 0.071 0.929 11 N -0.308 5.308 12 C -0.075 4.075 13 C -0.153 4.153 14 C -0.140 4.140 15 C -0.029 4.029 16 C -0.640 4.640 17 H 0.066 0.934 18 C -0.191 4.191 19 N -0.552 5.552 20 Si 0.900 3.100 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.210 1.210 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.167 0.833 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.764 -2.453 12.890 21.288 hybrid contribution -1.426 -1.253 0.512 1.966 sum -18.190 -3.706 13.402 22.896 Atomic orbital electron populations 1.21909 0.95550 1.01395 1.01861 1.20938 0.94868 0.97449 0.96523 1.22327 1.05251 0.94085 1.00646 1.22692 0.94711 0.99725 0.96345 0.90196 1.23642 0.89412 0.99943 0.90072 1.89105 1.16095 1.93780 1.30688 1.23486 0.89601 1.00708 0.88586 1.22870 0.93926 0.96892 0.91859 0.92941 1.60930 1.03798 1.61688 1.04398 1.22158 0.87920 0.97819 0.99623 1.21639 0.97607 1.00988 0.95095 1.21457 0.92448 0.99951 1.00161 1.19219 0.96446 0.95257 0.91984 1.22118 0.95665 1.36158 1.10088 0.93407 1.25860 1.06174 0.94282 0.92761 1.70744 1.13033 1.35594 1.35796 0.83519 0.74466 0.75895 0.76159 1.21457 1.21534 1.21009 0.92766 0.92539 0.93021 0.91071 0.93337 0.93587 0.87894 0.89736 0.90920 0.89515 0.90866 0.83285 0.95373 0.91135 0.91658 0.92837 0.93534 0.93248 0.97521 0.97683 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.01 37.16 0.34 -0.75 16 2 C -0.08 -0.66 2.22 -90.62 -0.20 -0.86 16 3 C -0.17 -1.56 8.06 37.16 0.30 -1.26 16 4 C -0.12 -1.03 2.92 -89.05 -0.26 -1.29 16 5 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 6 C 0.05 0.43 6.46 37.94 0.25 0.67 16 7 O -0.38 -4.51 11.65 -35.23 -0.41 -4.92 16 8 C 0.05 0.59 6.68 37.94 0.25 0.84 16 9 C 0.06 0.56 3.13 -66.15 -0.21 0.36 16 10 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 11 N -0.67 -7.44 3.21 -105.07 -0.34 -7.77 16 12 C 0.05 0.70 5.52 -3.82 -0.02 0.68 16 13 C -0.12 -1.88 5.47 -26.73 -0.15 -2.03 16 14 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 15 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 16 C -0.60 -17.57 9.11 -34.44 -0.31 -17.88 16 17 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 18 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 19 N -0.92 -28.58 13.65 55.43 0.76 -27.82 16 20 Si 1.07 25.76 29.90 -169.99 -5.08 20.67 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H 0.05 0.37 7.80 -51.93 -0.40 -0.03 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.62 6.35 -51.93 -0.33 0.29 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.41 6.21 -51.93 -0.32 0.09 16 30 H 0.10 1.14 5.51 -51.93 -0.29 0.85 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.67 5.31 -51.93 -0.28 0.39 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.35 3.65 6.24 -39.29 -0.25 3.40 16 36 H 0.03 0.37 8.13 -51.93 -0.42 -0.05 16 37 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 43 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 44 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -30.83 334.96 -8.48 -39.31 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.08 Total: -1.11 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -0.37 Total: -23.40 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.42 Total: -35.60 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.41 Total: -4.92 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.83 -8.48 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.488 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds