Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 C 1.52993 * 109.47157 * 120.00281 * 2 1 3 5 5 H 1.09001 * 110.56588 * 51.18710 * 4 2 1 6 6 C 1.54489 * 110.50926 * 288.50879 * 4 2 1 7 7 O 1.44426 * 104.79865 * 217.37746 * 6 4 2 8 8 C 1.44419 * 105.27824 * 40.51174 * 7 6 4 9 9 C 1.54482 * 104.80504 * 319.48485 * 8 7 6 10 10 H 1.09000 * 110.50982 * 265.19749 * 9 8 7 11 11 N 1.46895 * 110.50933 * 142.62345 * 9 8 7 12 12 C 1.46894 * 111.00244 * 74.67093 * 11 9 8 13 13 C 1.53006 * 109.47319 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46898 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46898 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47177 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99865 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00097 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46810 * 270.00355 * 20 18 16 22 22 H 1.48501 * 109.46875 * 30.00471 * 20 18 16 23 23 H 1.48501 * 109.46842 * 150.00509 * 20 18 16 24 24 H 1.08998 * 109.46968 * 305.00062 * 1 2 3 25 25 H 1.09002 * 109.46756 * 64.99663 * 1 2 3 26 26 H 1.08996 * 109.46802 * 184.99766 * 1 2 3 27 27 H 1.09000 * 109.46750 * 240.00237 * 2 1 3 28 28 H 1.09002 * 109.47144 * 291.29559 * 3 2 1 29 29 H 1.08997 * 109.47401 * 51.29340 * 3 2 1 30 30 H 1.09003 * 109.46939 * 171.29312 * 3 2 1 31 31 H 1.08998 * 110.36993 * 98.54796 * 6 4 2 32 32 H 1.08995 * 110.46262 * 336.25367 * 6 4 2 33 33 H 1.09002 * 110.37506 * 200.65408 * 8 7 6 34 34 H 1.08999 * 110.46798 * 78.37001 * 8 7 6 35 35 H 1.00902 * 110.99809 * 198.62253 * 11 9 8 36 36 H 1.08996 * 109.47626 * 59.99630 * 12 11 9 37 37 H 1.09005 * 109.47153 * 299.99617 * 12 11 9 38 38 H 1.09004 * 109.47054 * 60.00012 * 13 12 11 39 39 H 1.08990 * 109.47154 * 299.99681 * 13 12 11 40 40 H 1.09004 * 109.46845 * 60.00390 * 14 13 12 41 41 H 1.08990 * 109.47371 * 300.00055 * 14 13 12 42 42 H 1.08996 * 109.46875 * 59.99920 * 15 14 13 43 43 H 1.09005 * 109.46895 * 300.00526 * 15 14 13 44 44 H 0.96994 * 120.00178 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.5646 -1.6971 1.3488 6 6 1.7874 0.1352 2.5098 7 8 2.9477 -0.0819 3.3419 8 6 4.0712 -0.0867 2.4345 9 6 3.5771 -0.8706 1.1985 10 1 3.8636 -1.9197 1.2720 11 7 4.1115 -0.2776 -0.0346 12 6 5.5339 -0.6040 -0.2023 13 6 6.0535 0.0290 -1.4947 14 6 7.5351 -0.3106 -1.6690 15 6 8.0546 0.3219 -2.9618 16 6 9.5137 -0.0130 -3.1338 17 1 10.0199 -0.6170 -2.3952 18 6 10.2024 0.4507 -4.2346 19 7 9.5859 1.1857 -5.1342 20 14 12.0114 0.0361 -4.4476 21 1 12.8391 1.0841 -3.7982 22 1 12.2951 -1.2790 -3.8189 23 1 12.3378 -0.0263 -5.8949 24 1 -0.3633 0.5894 0.8418 25 1 -0.3633 0.4344 -0.9314 26 1 -0.3633 -1.0237 0.0895 27 1 1.8933 -0.5138 -0.8900 28 1 1.8093 1.9095 -0.9575 29 1 1.5553 1.9993 0.8019 30 1 3.1189 1.4464 0.1556 31 1 0.8853 -0.1999 3.0216 32 1 1.7029 1.1889 2.2439 33 1 4.9236 -0.5921 2.8885 34 1 4.3400 0.9321 2.1552 35 1 3.5761 -0.5703 -0.8381 36 1 5.6547 -1.6860 -0.2540 37 1 6.0983 -0.2155 0.6454 38 1 5.9327 1.1111 -1.4434 39 1 5.4892 -0.3598 -2.3422 40 1 7.6563 -1.3926 -1.7202 41 1 8.0992 0.0786 -0.8215 42 1 7.9333 1.4039 -2.9111 43 1 7.4903 -0.0676 -3.8091 44 1 8.6467 1.4013 -5.0235 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711078714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = -87.684168 kcal Electronic energy + Delta-G solvation = -19455.853342 eV Core-core repulsion = 16599.406626 eV Total energy + Delta-G solvation = -2856.446716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23730 -37.74102 -36.72512 -35.77120 -33.93578 -31.00204 -29.48753 -28.46002 -27.89905 -25.95102 -24.74450 -23.20154 -22.12331 -21.86448 -19.79363 -18.88482 -17.59045 -17.30617 -16.90302 -16.44439 -16.02601 -15.67659 -15.48991 -15.13076 -14.83225 -14.45989 -14.27076 -13.98416 -13.72992 -13.25659 -13.17001 -12.78003 -12.60593 -12.52687 -12.47681 -12.32465 -12.19761 -12.03988 -11.94567 -11.61223 -11.57134 -11.45489 -11.37514 -11.30351 -10.62801 -10.60494 -10.55110 -9.31327 -8.70062 -6.40418 1.51402 1.61021 1.78805 2.56023 2.86457 3.14872 3.23891 3.47390 3.76448 3.85113 4.03730 4.10655 4.18180 4.23387 4.32485 4.43334 4.45020 4.51111 4.53623 4.69443 4.72015 4.79277 4.84422 4.85225 4.86900 4.92549 5.02852 5.08182 5.11125 5.15992 5.21393 5.25776 5.34001 5.47609 5.48277 5.57020 5.70348 5.80914 6.00810 6.06259 6.18708 6.36915 6.57788 7.42136 8.70854 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.003318 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.057622 B = 8435.989384 C = 8900.885363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.164 4.164 4 C -0.109 4.109 5 H 0.091 0.909 6 C 0.043 3.957 7 O -0.397 6.397 8 C 0.052 3.948 9 C 0.057 3.943 10 H 0.054 0.946 11 N -0.670 5.670 12 C 0.066 3.934 13 C -0.103 4.103 14 C -0.091 4.091 15 C 0.007 3.993 16 C -0.622 4.622 17 H 0.050 0.950 18 C -0.042 4.042 19 N -0.939 5.939 20 Si 1.121 2.879 21 H -0.272 1.272 22 H -0.268 1.268 23 H -0.282 1.282 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.350 0.650 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.049 0.951 42 H -0.013 1.013 43 H -0.013 1.013 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.592 -4.214 14.303 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 C -0.221 4.221 4 C -0.128 4.128 5 H 0.109 0.891 6 C -0.033 4.033 7 O -0.315 6.315 8 C -0.025 4.025 9 C -0.053 4.053 10 H 0.072 0.928 11 N -0.305 5.305 12 C -0.063 4.063 13 C -0.141 4.141 14 C -0.130 4.130 15 C -0.030 4.030 16 C -0.660 4.660 17 H 0.068 0.932 18 C -0.239 4.239 19 N -0.576 5.576 20 Si 0.942 3.058 21 H -0.197 1.197 22 H -0.193 1.193 23 H -0.207 1.207 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.172 0.828 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.005 0.995 43 H 0.005 0.995 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.193 -3.434 13.851 22.343 hybrid contribution -1.356 -0.916 0.231 1.653 sum -18.549 -4.350 14.082 23.691 Atomic orbital electron populations 1.21881 0.94415 1.02040 1.02113 1.20899 0.95778 0.96525 0.96222 1.22273 1.04213 0.95004 1.00578 1.22670 0.93595 1.00233 0.96275 0.89108 1.23782 0.89225 1.00164 0.90169 1.89087 1.16943 1.93865 1.31646 1.23486 0.89729 1.00393 0.88875 1.22862 0.94924 0.96647 0.90894 0.92771 1.60876 1.02662 1.61885 1.05065 1.21918 0.89197 0.97621 0.97601 1.21442 0.94805 1.00802 0.97074 1.21291 0.95151 0.99437 0.97088 1.19198 0.95351 0.94286 0.94204 1.22584 0.97252 1.35940 1.10179 0.93189 1.27507 1.10575 0.93405 0.92430 1.70884 1.12508 1.37331 1.36924 0.82897 0.69310 0.77066 0.76556 1.19710 1.19324 1.20714 0.92303 0.92523 0.92212 0.91199 0.93720 0.93166 0.89480 0.88177 0.90929 0.89215 0.91705 0.82753 0.94929 0.91037 0.92370 0.92745 0.93307 0.93175 0.99502 0.99481 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.01 71.98 0.65 -1.17 16 2 C -0.08 -1.13 2.22 -10.79 -0.02 -1.15 16 3 C -0.16 -2.90 8.06 71.98 0.58 -2.32 16 4 C -0.11 -1.71 2.92 -9.78 -0.03 -1.73 16 5 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 6 C 0.04 0.72 6.46 72.49 0.47 1.19 16 7 O -0.40 -8.92 11.65 -148.98 -1.74 -10.66 16 8 C 0.05 1.09 6.68 72.49 0.48 1.58 16 9 C 0.06 1.07 3.13 45.93 0.14 1.22 16 10 H 0.05 1.03 8.07 -2.39 -0.02 1.01 16 11 N -0.67 -13.89 3.21 -486.34 -1.56 -15.46 16 12 C 0.07 1.64 5.52 86.31 0.48 2.12 16 13 C -0.10 -3.32 5.47 30.60 0.17 -3.15 16 14 C -0.09 -3.75 5.15 30.60 0.16 -3.59 16 15 C 0.01 0.36 4.28 29.85 0.13 0.48 16 16 C -0.62 -36.51 9.11 25.60 0.23 -36.28 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 19 N -0.94 -59.55 13.65 21.45 0.29 -59.26 16 20 Si 1.12 51.09 29.90 68.60 2.05 53.14 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H 0.06 0.67 7.80 -2.39 -0.02 0.66 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 1.08 6.35 -2.39 -0.02 1.07 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.83 6.21 -2.39 -0.01 0.82 16 30 H 0.09 1.85 5.51 -2.39 -0.01 1.84 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.22 5.31 -2.39 -0.01 1.21 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.45 8.06 -2.39 -0.02 1.43 16 35 H 0.35 6.85 6.24 -89.69 -0.56 6.29 16 36 H 0.03 0.80 8.13 -2.39 -0.02 0.78 16 37 H 0.07 1.80 7.66 -2.38 -0.02 1.78 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 43 H -0.01 -0.74 8.01 -2.38 -0.02 -0.76 16 44 H 0.26 16.38 7.22 -92.71 -0.67 15.71 16 Total: -1.00 -65.95 334.96 3.43 -62.52 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.49 Total: 14.57 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 3.90 Total: -44.86 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -1.27 Total: -74.71 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.74 Total: -10.66 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -65.95 3.43 -62.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711078714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.164 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds