Wall clock time and date at job start Mon Mar 30 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99793 * 2 1 4 4 C 1.53007 * 109.46831 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47003 * 60.00181 * 4 3 2 6 6 C 1.52999 * 109.46922 * 299.99718 * 4 3 2 7 7 C 1.52996 * 109.46722 * 180.02562 * 4 3 2 8 8 N 1.46507 * 109.46912 * 183.54304 * 7 4 3 9 9 C 1.36931 * 119.99914 * 74.78405 * 8 7 4 10 10 H 1.07998 * 119.99956 * 204.11204 * 9 8 7 11 11 C 1.38816 * 120.00028 * 24.11866 * 9 8 7 12 12 N 1.31617 * 119.99911 * 23.33473 * 11 9 8 13 13 Si 1.86798 * 119.99772 * 203.33492 * 11 9 8 14 14 H 1.48496 * 109.47325 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47148 * 119.99912 * 13 11 9 16 16 H 1.48502 * 109.47477 * 239.99874 * 13 11 9 17 17 C 1.46500 * 119.99687 * 254.51357 * 8 7 4 18 18 C 1.54266 * 110.03083 * 237.90397 * 17 8 7 19 19 C 1.54964 * 104.16299 * 217.13833 * 18 17 8 20 20 C 1.54891 * 102.77270 * 37.88698 * 19 18 17 21 21 C 1.53874 * 110.03140 * 120.68886 * 17 8 7 22 22 H 1.08994 * 109.47141 * 60.00015 * 1 2 3 23 23 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46545 * 299.99998 * 1 2 3 25 25 H 1.08998 * 109.47213 * 60.00031 * 3 2 1 26 26 H 1.09002 * 109.47253 * 300.00092 * 3 2 1 27 27 H 1.09003 * 109.47183 * 175.23611 * 5 4 3 28 28 H 1.09005 * 109.47199 * 295.23250 * 5 4 3 29 29 H 1.08994 * 109.47327 * 55.23240 * 5 4 3 30 30 H 1.08999 * 109.47558 * 293.17969 * 6 4 3 31 31 H 1.09000 * 109.47035 * 53.18076 * 6 4 3 32 32 H 1.09001 * 109.47150 * 173.17264 * 6 4 3 33 33 H 1.09000 * 109.47275 * 63.54237 * 7 4 3 34 34 H 1.09003 * 109.47241 * 303.54063 * 7 4 3 35 35 H 0.97006 * 119.99317 * 179.97438 * 12 11 9 36 36 H 1.08994 * 110.01660 * 359.29680 * 17 8 7 37 37 H 1.09005 * 110.48431 * 335.79013 * 18 17 8 38 38 H 1.08999 * 110.48649 * 98.42587 * 18 17 8 39 39 H 1.08994 * 110.71792 * 279.57853 * 19 18 17 40 40 H 1.08999 * 110.92305 * 156.29372 * 19 18 17 41 41 H 1.09003 * 110.48397 * 203.40055 * 20 19 18 42 42 H 1.08997 * 110.59512 * 80.82432 * 20 19 18 43 43 H 1.08999 * 110.03491 * 238.56705 * 21 17 8 44 44 H 1.09002 * 110.03199 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9864 0.4257 -1.2502 6 6 3.9874 0.4252 1.2483 7 6 4.1578 2.5824 0.0000 8 7 5.6158 2.4679 -0.0860 9 6 6.2074 2.1336 -1.2748 10 1 7.1851 1.6750 -1.2813 11 6 5.5504 2.3844 -2.4717 12 7 4.6223 3.3158 -2.5304 13 14 5.9835 1.3998 -3.9989 14 1 7.0513 0.4214 -3.6708 15 1 4.7791 0.6763 -4.4795 16 1 6.4650 2.3195 -5.0608 17 6 6.4412 2.7167 1.0985 18 6 7.4488 3.8491 0.8120 19 6 8.7330 3.4125 1.5614 20 6 8.7525 1.8793 1.3427 21 6 7.2696 1.4648 1.4362 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 5.0755 0.4129 -1.2944 28 1 3.6126 -0.5974 -1.2086 29 1 3.5926 0.9206 -2.1378 30 1 3.7741 1.0232 2.1343 31 1 3.4514 -0.5218 1.3115 32 1 5.0587 0.2330 1.1889 33 1 3.8876 3.1000 0.9205 34 1 3.7865 3.1458 -0.8561 35 1 4.1635 3.4912 -3.3669 36 1 5.8084 2.9851 1.9445 37 1 7.6399 3.9280 -0.2582 38 1 7.0801 4.7965 1.2054 39 1 8.6600 3.6504 2.6225 40 1 9.6164 3.8766 1.1228 41 1 9.3354 1.3900 2.1231 42 1 9.1551 1.6373 0.3591 43 1 7.0395 1.1261 2.4464 44 1 7.0572 0.6719 0.7190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712641555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:07 Heat of formation + Delta-G solvation = -48.068496 kcal Electronic energy + Delta-G solvation = -21238.369756 eV Core-core repulsion = 18383.640905 eV Total energy + Delta-G solvation = -2854.728851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08982 -38.85783 -37.09573 -34.48931 -32.63382 -29.34411 -28.50371 -28.11799 -28.08368 -27.25658 -25.98286 -23.71284 -21.30310 -20.72450 -19.84779 -17.99404 -17.24704 -16.95568 -16.62548 -16.32825 -16.16644 -15.85216 -14.84443 -14.78875 -14.59284 -14.18621 -14.00390 -13.85507 -13.29234 -12.97505 -12.71639 -12.63363 -12.46241 -12.38886 -12.20969 -12.07663 -11.78854 -11.76523 -11.73628 -11.65914 -11.31776 -11.27685 -11.23143 -11.16592 -10.93191 -10.50214 -10.25806 -8.49890 -7.55457 -5.09926 1.43759 1.51132 1.54131 2.57515 2.95837 3.40847 3.77213 4.03642 4.07903 4.16412 4.25609 4.39497 4.43103 4.53295 4.57983 4.66092 4.73614 4.77836 4.81930 4.83508 4.94241 4.99550 5.00111 5.04543 5.09791 5.16130 5.24108 5.27975 5.32557 5.38312 5.46637 5.58322 5.60600 5.68644 5.73069 5.75224 5.85256 6.00753 6.14207 6.35264 6.62333 7.33375 8.09377 8.51863 9.28824 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.009293 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.809750 B = 3012.321520 C = 4040.963919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.082 3.918 4 C -0.065 4.065 5 C -0.116 4.116 6 C -0.115 4.115 7 C 0.138 3.862 8 N -0.582 5.582 9 C -0.216 4.216 10 H 0.060 0.940 11 C -0.027 4.027 12 N -0.910 5.910 13 Si 0.917 3.083 14 H -0.272 1.272 15 H -0.296 1.296 16 H -0.302 1.302 17 C 0.165 3.835 18 C -0.132 4.132 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.128 4.128 22 H 0.037 0.963 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -3.085 9.038 9.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.005 3.995 4 C -0.067 4.067 5 C -0.173 4.173 6 C -0.172 4.172 7 C 0.012 3.988 8 N -0.301 5.301 9 C -0.346 4.346 10 H 0.078 0.922 11 C -0.222 4.222 12 N -0.557 5.557 13 Si 0.748 3.252 14 H -0.196 1.196 15 H -0.223 1.223 16 H -0.230 1.230 17 C 0.058 3.942 18 C -0.171 4.171 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.167 4.167 22 H 0.056 0.944 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.280 -3.204 8.919 9.564 hybrid contribution -0.334 -0.119 -1.442 1.485 sum -1.613 -3.323 7.477 8.340 Atomic orbital electron populations 1.22889 0.80361 1.03505 1.00339 1.87853 1.20745 1.28646 1.95406 1.22467 0.94312 0.83793 0.98925 1.20968 0.91246 0.98735 0.95759 1.21845 1.03113 0.96188 0.96139 1.21616 1.00932 0.98836 0.95865 1.21269 0.83751 0.93388 1.00396 1.44120 1.00845 1.79414 1.05737 1.18875 1.01753 1.30116 0.83845 0.92238 1.25036 1.00316 0.98795 0.98098 1.69857 1.29579 1.31675 1.24616 0.86014 0.77335 0.79478 0.82376 1.19633 1.22286 1.22989 1.21243 0.91548 0.92901 0.88508 1.22752 0.96371 0.98133 0.99889 1.22392 0.96865 0.95561 1.00193 1.22249 0.96227 0.96145 1.00706 1.22559 0.95308 0.98633 1.00230 0.94395 0.88365 0.93064 0.92991 0.95223 0.90546 0.96091 0.96111 0.93534 0.93733 0.92808 0.95545 0.89506 0.94646 0.92537 0.93489 0.93327 0.90487 0.91856 0.90614 0.93558 0.91711 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.33 9.33 -148.98 -1.39 -15.72 16 3 C 0.08 3.04 4.81 71.98 0.35 3.39 16 4 C -0.06 -2.65 0.68 -52.18 -0.04 -2.69 16 5 C -0.12 -5.31 6.26 71.98 0.45 -4.86 16 6 C -0.12 -4.20 8.08 71.98 0.58 -3.62 16 7 C 0.14 6.21 4.52 86.38 0.39 6.60 16 8 N -0.58 -26.40 2.00 -674.01 -1.35 -27.75 16 9 C -0.22 -10.86 5.17 84.04 0.43 -10.43 16 10 H 0.06 3.07 7.42 -2.91 -0.02 3.05 16 11 C -0.03 -1.41 2.91 84.86 0.25 -1.16 16 12 N -0.91 -50.46 10.56 21.65 0.23 -50.23 16 13 Si 0.92 44.46 28.00 68.60 1.92 46.38 16 14 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 16 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 17 C 0.16 6.30 3.17 45.72 0.14 6.45 16 18 C -0.13 -4.88 6.42 31.70 0.20 -4.68 16 19 C -0.11 -3.24 6.91 31.91 0.22 -3.02 16 20 C -0.12 -3.45 6.83 31.67 0.22 -3.23 16 21 C -0.13 -4.33 4.95 31.32 0.16 -4.18 16 22 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 3.74 4.44 -2.39 -0.01 3.73 16 28 H 0.02 0.90 7.83 -2.38 -0.02 0.88 16 29 H 0.02 1.01 6.60 -2.39 -0.02 1.00 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.58 7.49 -2.39 -0.02 1.56 16 32 H 0.05 2.03 5.77 -2.39 -0.01 2.02 16 33 H 0.03 1.10 7.66 -2.39 -0.02 1.08 16 34 H 0.09 4.56 4.99 -2.39 -0.01 4.55 16 35 H 0.24 13.42 8.31 -92.70 -0.77 12.65 16 36 H 0.06 2.06 7.65 -2.39 -0.02 2.04 16 37 H 0.05 2.08 7.02 -2.38 -0.02 2.06 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.96 6.49 -2.39 -0.02 1.94 16 Total: -1.00 -56.38 322.26 4.95 -51.43 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.94 Total: 15.43 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 4.60 Total: -19.54 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -1.12 Total: -77.98 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.39 Total: -15.72 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.92 Total: 46.38 kcal Total: -56.38 4.95 -51.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712641555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.360 kcal (2) G-P(sol) polarization free energy of solvation -56.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds