Wall clock time and date at job start Mon Mar 30 2020 07:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47116 * 2 1 4 4 C 1.53000 * 109.47042 * 119.99929 * 2 1 3 5 5 N 1.46898 * 109.47202 * 176.08390 * 4 2 1 6 6 C 1.46905 * 111.00012 * 160.50772 * 5 4 2 7 7 C 1.50700 * 109.47231 * 288.49185 * 6 5 4 8 8 H 1.07993 * 120.00091 * 3.42356 * 7 6 5 9 9 C 1.37880 * 119.99394 * 183.42636 * 7 6 5 10 10 N 1.31505 * 120.00292 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99352 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47613 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47391 * 120.00065 * 11 9 7 14 14 H 1.48504 * 109.46954 * 239.99493 * 11 9 7 15 15 C 1.46894 * 111.00205 * 284.46751 * 5 4 2 16 16 H 1.09002 * 109.47443 * 54.99688 * 15 5 4 17 17 C 1.53002 * 109.47053 * 294.99961 * 15 5 4 18 18 C 1.52998 * 109.47299 * 180.02562 * 17 15 5 19 19 C 1.53003 * 109.46930 * 59.99595 * 18 17 15 20 20 C 1.52994 * 109.47521 * 300.00117 * 19 18 17 21 21 H 1.09004 * 109.47261 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47328 * 300.00428 * 20 19 18 23 23 C 1.52998 * 109.47114 * 59.99996 * 20 19 18 24 24 H 1.08996 * 109.46912 * 300.00078 * 1 2 3 25 25 H 1.09001 * 109.47059 * 60.00412 * 1 2 3 26 26 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46737 * 239.99497 * 2 1 3 28 28 H 1.08997 * 109.47300 * 55.69656 * 3 2 1 29 29 H 1.09003 * 109.47219 * 175.70301 * 3 2 1 30 30 H 1.09005 * 109.47132 * 295.69325 * 3 2 1 31 31 H 1.09002 * 109.47122 * 56.08567 * 4 2 1 32 32 H 1.09002 * 109.46938 * 296.09004 * 4 2 1 33 33 H 1.09003 * 109.46579 * 48.49040 * 6 5 4 34 34 H 1.08999 * 109.46946 * 168.48324 * 6 5 4 35 35 H 0.97008 * 120.00240 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46773 * 300.00137 * 17 15 5 37 37 H 1.08994 * 109.47171 * 60.00112 * 17 15 5 38 38 H 1.08997 * 109.47254 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.46786 * 300.00071 * 18 17 15 40 40 H 1.09003 * 109.47140 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.46997 * 60.00605 * 19 18 17 42 42 H 0.96706 * 113.99753 * 299.99934 * 22 20 19 43 43 H 1.08997 * 109.47254 * 179.97438 * 23 20 19 44 44 H 1.09002 * 109.47201 * 60.00231 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5060 -0.8037 1.2029 6 6 4.0617 -1.0534 2.5397 7 6 3.9170 0.1867 3.3836 8 1 3.4088 1.0533 2.9873 9 6 4.4334 0.2148 4.6617 10 7 5.0518 -0.8406 5.1444 11 14 4.2547 1.7523 5.7075 12 1 3.5249 2.7921 4.9384 13 1 3.4966 1.4259 6.9420 14 1 5.6009 2.2613 6.0734 15 6 3.9456 -1.8312 0.2496 16 1 3.5049 -1.6327 -0.7274 17 6 3.4965 -3.2087 0.7413 18 6 3.9549 -4.2789 -0.2513 19 6 5.4805 -4.2500 -0.3640 20 6 5.9296 -2.8726 -0.8557 21 1 7.0165 -2.8522 -0.9364 22 8 5.3523 -2.6126 -2.1367 23 6 5.4712 -1.8023 0.1369 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6151 1.9781 0.8489 29 1 3.1273 1.4435 0.0770 30 1 1.7411 1.9336 -0.9261 31 1 1.6205 -1.7267 1.2850 32 1 1.7350 -0.1685 2.1378 33 1 3.5234 -1.8770 3.0088 34 1 5.1169 -1.3122 2.4519 35 1 5.4155 -0.8207 6.0435 36 1 3.9371 -3.4071 1.7183 37 1 2.4097 -3.2291 0.8220 38 1 3.6346 -5.2602 0.0988 39 1 3.5146 -4.0806 -1.2285 40 1 5.8072 -5.0128 -1.0708 41 1 5.9208 -4.4483 0.6132 42 1 5.6004 -3.2533 -2.8173 43 1 5.7915 -0.8211 -0.2131 44 1 5.9115 -2.0006 1.1141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712814011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:08 Heat of formation + Delta-G solvation = -73.575887 kcal Electronic energy + Delta-G solvation = -20779.238431 eV Core-core repulsion = 17923.403497 eV Total energy + Delta-G solvation = -2855.834935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.36935 -37.02125 -34.72804 -33.43807 -32.16810 -29.85936 -28.70829 -26.88135 -26.55557 -24.41041 -22.51140 -22.10549 -20.64908 -19.54873 -18.40088 -16.55332 -16.33212 -15.59044 -15.05781 -14.53509 -14.27491 -13.98862 -13.70687 -13.52571 -13.15771 -12.85450 -12.43216 -12.30057 -12.05806 -11.76403 -11.66048 -11.48042 -11.31473 -10.97959 -10.90296 -10.77430 -10.63210 -10.46772 -10.41676 -10.35931 -9.99730 -9.88091 -9.78257 -9.50457 -9.25761 -9.06173 -8.35680 -7.01944 -5.97357 -3.96881 3.33355 3.41058 3.46267 4.46809 4.49399 4.83458 5.03324 5.09902 5.23554 5.38153 5.45779 5.51968 5.59003 5.65691 5.70677 5.77745 5.86505 5.92520 6.02292 6.06986 6.16322 6.22341 6.25001 6.29497 6.36578 6.41945 6.49829 6.54732 6.58117 6.64712 6.70304 6.86047 6.94367 7.01294 7.08261 7.40850 7.46660 7.83134 7.90616 8.21886 8.36291 8.67930 9.11981 9.66735 11.13199 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.007676 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.901495 B = 3646.779330 C = 4700.771638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.133 4.133 4 C 0.064 3.936 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.095 3.905 16 H 0.075 0.925 17 C -0.155 4.155 18 C -0.107 4.107 19 C -0.151 4.151 20 C 0.107 3.893 21 H 0.050 0.950 22 O -0.561 6.561 23 C -0.105 4.105 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.022 0.978 32 H 0.079 0.921 33 H -0.012 1.012 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.367 0.633 43 H 0.072 0.928 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -5.087 -12.207 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.191 4.191 4 C -0.064 4.064 5 N -0.251 5.251 6 C 0.064 3.936 7 C -0.538 4.538 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.211 1.211 15 C -0.015 4.015 16 H 0.093 0.907 17 C -0.194 4.194 18 C -0.145 4.145 19 C -0.189 4.189 20 C 0.048 3.952 21 H 0.068 0.932 22 O -0.366 6.366 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.006 0.994 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.212 0.788 43 H 0.091 0.909 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.155 -4.154 -11.853 12.743 hybrid contribution -0.052 -0.634 0.803 1.024 sum -2.207 -4.788 -11.050 12.243 Atomic orbital electron populations 1.21819 0.96421 1.00860 1.01143 1.21094 0.93867 0.97278 0.98712 1.21668 1.02996 0.94976 0.99412 1.22074 0.88921 0.97662 0.97753 1.62273 1.07641 1.44243 1.10900 1.19783 0.95118 0.95812 0.82887 1.21260 1.35342 0.99689 0.97535 0.91880 1.24967 0.95587 0.96213 0.97929 1.69961 1.38506 1.28804 1.16803 0.86518 0.77702 0.83465 0.80190 1.19699 1.21273 1.21147 1.21513 0.94480 0.88695 0.96778 0.90664 1.22265 1.00745 0.96817 0.99597 1.21344 0.94896 0.98357 0.99891 1.22241 0.97496 0.97249 1.01891 1.21860 0.95279 0.94517 0.83562 0.93242 1.86596 1.74899 1.55145 1.19930 1.21648 0.96620 0.98049 0.97894 0.92847 0.93359 0.93449 0.92089 0.93463 0.90904 0.94729 0.96030 0.90257 0.99423 0.94618 0.93176 0.91411 0.92348 0.92987 0.91934 0.92512 0.91032 0.78773 0.90948 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.19 37.16 0.34 -1.69 16 2 C -0.09 -1.50 2.97 -90.62 -0.27 -1.77 16 3 C -0.13 -2.25 9.12 37.16 0.34 -1.91 16 4 C 0.06 1.25 4.09 -3.82 -0.02 1.24 16 5 N -0.53 -11.17 3.71 -228.08 -0.85 -12.02 16 6 C 0.19 4.79 3.65 -4.97 -0.02 4.77 16 7 C -0.50 -13.90 8.39 -34.44 -0.29 -14.18 16 8 H 0.06 1.76 7.55 -52.49 -0.40 1.36 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.59 13.28 55.43 0.74 -25.85 16 11 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.09 1.73 2.00 -67.71 -0.14 1.59 16 16 H 0.08 1.39 6.21 -51.93 -0.32 1.07 16 17 C -0.16 -2.66 4.58 -26.73 -0.12 -2.79 16 18 C -0.11 -1.48 5.78 -26.73 -0.15 -1.64 16 19 C -0.15 -1.93 5.64 -26.73 -0.15 -2.08 16 20 C 0.11 1.48 3.77 -26.74 -0.10 1.38 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 O -0.56 -7.47 11.97 -35.23 -0.42 -7.89 16 23 C -0.10 -1.84 4.79 -26.73 -0.13 -1.97 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.02 6.73 -51.93 -0.35 0.67 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.38 7.60 -51.93 -0.39 0.99 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.41 5.89 -51.93 -0.31 0.11 16 32 H 0.08 1.73 6.95 -51.93 -0.36 1.37 16 33 H -0.01 -0.33 7.12 -51.93 -0.37 -0.70 16 34 H 0.04 0.96 5.68 -51.93 -0.30 0.67 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 37 H 0.06 1.01 6.25 -51.93 -0.32 0.69 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.37 3.19 9.08 45.56 0.41 3.60 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.63 6.13 -51.93 -0.32 1.31 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -29.59 328.60 -8.53 -38.13 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.14 Total: 3.53 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -0.80 Total: -17.63 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.11 Total: -37.87 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.42 Total: -7.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.59 -8.53 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.447 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds