Wall clock time and date at job start Mon Mar 30 2020 07:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47116 * 2 1 4 4 C 1.53000 * 109.47042 * 119.99929 * 2 1 3 5 5 N 1.46898 * 109.47202 * 176.08390 * 4 2 1 6 6 C 1.46905 * 111.00012 * 160.50772 * 5 4 2 7 7 C 1.50700 * 109.47231 * 288.49185 * 6 5 4 8 8 H 1.07993 * 120.00091 * 3.42356 * 7 6 5 9 9 C 1.37880 * 119.99394 * 183.42636 * 7 6 5 10 10 N 1.31505 * 120.00292 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99352 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47613 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47391 * 120.00065 * 11 9 7 14 14 H 1.48504 * 109.46954 * 239.99493 * 11 9 7 15 15 C 1.46894 * 111.00205 * 284.46751 * 5 4 2 16 16 H 1.09002 * 109.47443 * 54.99688 * 15 5 4 17 17 C 1.53002 * 109.47053 * 294.99961 * 15 5 4 18 18 C 1.52998 * 109.47299 * 180.02562 * 17 15 5 19 19 C 1.53003 * 109.46930 * 59.99595 * 18 17 15 20 20 C 1.52994 * 109.47521 * 300.00117 * 19 18 17 21 21 H 1.09004 * 109.47261 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47328 * 300.00428 * 20 19 18 23 23 C 1.52998 * 109.47114 * 59.99996 * 20 19 18 24 24 H 1.08996 * 109.46912 * 300.00078 * 1 2 3 25 25 H 1.09001 * 109.47059 * 60.00412 * 1 2 3 26 26 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46737 * 239.99497 * 2 1 3 28 28 H 1.08997 * 109.47300 * 55.69656 * 3 2 1 29 29 H 1.09003 * 109.47219 * 175.70301 * 3 2 1 30 30 H 1.09005 * 109.47132 * 295.69325 * 3 2 1 31 31 H 1.09002 * 109.47122 * 56.08567 * 4 2 1 32 32 H 1.09002 * 109.46938 * 296.09004 * 4 2 1 33 33 H 1.09003 * 109.46579 * 48.49040 * 6 5 4 34 34 H 1.08999 * 109.46946 * 168.48324 * 6 5 4 35 35 H 0.97008 * 120.00240 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46773 * 300.00137 * 17 15 5 37 37 H 1.08994 * 109.47171 * 60.00112 * 17 15 5 38 38 H 1.08997 * 109.47254 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.46786 * 300.00071 * 18 17 15 40 40 H 1.09003 * 109.47140 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.46997 * 60.00605 * 19 18 17 42 42 H 0.96706 * 113.99753 * 299.99934 * 22 20 19 43 43 H 1.08997 * 109.47254 * 179.97438 * 23 20 19 44 44 H 1.09002 * 109.47201 * 60.00231 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5060 -0.8037 1.2029 6 6 4.0617 -1.0534 2.5397 7 6 3.9170 0.1867 3.3836 8 1 3.4088 1.0533 2.9873 9 6 4.4334 0.2148 4.6617 10 7 5.0518 -0.8406 5.1444 11 14 4.2547 1.7523 5.7075 12 1 3.5249 2.7921 4.9384 13 1 3.4966 1.4259 6.9420 14 1 5.6009 2.2613 6.0734 15 6 3.9456 -1.8312 0.2496 16 1 3.5049 -1.6327 -0.7274 17 6 3.4965 -3.2087 0.7413 18 6 3.9549 -4.2789 -0.2513 19 6 5.4805 -4.2500 -0.3640 20 6 5.9296 -2.8726 -0.8557 21 1 7.0165 -2.8522 -0.9364 22 8 5.3523 -2.6126 -2.1367 23 6 5.4712 -1.8023 0.1369 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6151 1.9781 0.8489 29 1 3.1273 1.4435 0.0770 30 1 1.7411 1.9336 -0.9261 31 1 1.6205 -1.7267 1.2850 32 1 1.7350 -0.1685 2.1378 33 1 3.5234 -1.8770 3.0088 34 1 5.1169 -1.3122 2.4519 35 1 5.4155 -0.8207 6.0435 36 1 3.9371 -3.4071 1.7183 37 1 2.4097 -3.2291 0.8220 38 1 3.6346 -5.2602 0.0988 39 1 3.5146 -4.0806 -1.2285 40 1 5.8072 -5.0128 -1.0708 41 1 5.9208 -4.4483 0.6132 42 1 5.6004 -3.2533 -2.8173 43 1 5.7915 -0.8211 -0.2131 44 1 5.9115 -2.0006 1.1141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712814011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:07 Heat of formation + Delta-G solvation = -93.106205 kcal Electronic energy + Delta-G solvation = -20780.085329 eV Core-core repulsion = 17923.403497 eV Total energy + Delta-G solvation = -2856.681833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76616 -38.38095 -36.00810 -35.17441 -33.94467 -31.19371 -30.23666 -28.67609 -27.85726 -26.11424 -24.29370 -23.38243 -22.05283 -20.88991 -19.92975 -18.42847 -17.66897 -16.97597 -16.67396 -16.29036 -15.67142 -15.38730 -15.19685 -14.80957 -14.77073 -14.22760 -14.09807 -13.84188 -13.53396 -13.10521 -13.03728 -12.92122 -12.80821 -12.71403 -12.54888 -12.39127 -12.27770 -11.86275 -11.78303 -11.72611 -11.58318 -11.42182 -11.30670 -11.01217 -10.96616 -10.54447 -10.52201 -8.77780 -8.16391 -6.24551 1.38485 1.39483 1.52678 2.41071 3.14339 3.32671 3.45607 3.83342 3.89276 3.96980 4.14102 4.21072 4.26946 4.35115 4.40804 4.51516 4.57231 4.64004 4.68320 4.77220 4.89137 4.91295 4.97800 5.01499 5.06081 5.11830 5.14498 5.21048 5.23570 5.27486 5.29302 5.33777 5.40822 5.43775 5.57628 5.58908 5.67858 5.72192 6.15981 6.51827 6.79312 6.93039 7.04429 7.44092 8.93646 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.007676 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.901495 B = 3646.779330 C = 4700.771638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C -0.129 4.129 4 C 0.067 3.933 5 N -0.535 5.535 6 C 0.211 3.789 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.002 3.998 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.098 3.902 16 H 0.082 0.918 17 C -0.150 4.150 18 C -0.101 4.101 19 C -0.147 4.147 20 C 0.117 3.883 21 H 0.067 0.933 22 O -0.573 6.573 23 C -0.105 4.105 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.050 0.950 33 H -0.043 1.043 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.391 0.609 43 H 0.055 0.945 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -5.214 -14.106 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.186 4.186 4 C -0.062 4.062 5 N -0.257 5.257 6 C 0.085 3.915 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.190 1.190 13 H -0.205 1.205 14 H -0.205 1.205 15 C -0.011 4.011 16 H 0.100 0.900 17 C -0.189 4.189 18 C -0.139 4.139 19 C -0.185 4.185 20 C 0.058 3.942 21 H 0.085 0.915 22 O -0.381 6.381 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.068 0.932 33 H -0.026 1.026 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.240 0.760 43 H 0.074 0.926 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.773 -4.294 -13.786 14.703 hybrid contribution 0.133 -0.609 1.348 1.485 sum -2.640 -4.903 -12.439 13.628 Atomic orbital electron populations 1.21768 0.93975 1.01801 1.02113 1.21042 0.95823 0.96514 0.96817 1.21611 1.01102 0.95430 1.00483 1.22075 0.87893 0.97777 0.98409 1.62231 1.08746 1.45746 1.09004 1.19353 0.93588 0.93816 0.84733 1.21544 1.35268 1.00202 0.98320 0.92441 1.25821 0.95156 0.99387 0.99209 1.70082 1.39263 1.30809 1.17307 0.85454 0.77908 0.79606 0.78382 1.19040 1.20538 1.20460 1.21541 0.95041 0.88585 0.95909 0.89971 1.22170 1.00186 0.97467 0.99052 1.21319 0.95833 0.97525 0.99178 1.22226 0.96470 0.97531 1.02252 1.21630 0.96061 0.93357 0.83181 0.91544 1.86528 1.75052 1.56476 1.20024 1.21579 0.95938 0.98893 0.97921 0.93219 0.91033 0.92585 0.91593 0.94276 0.93621 0.91982 0.95863 0.93154 1.02568 0.96797 0.92930 0.94685 0.92784 0.91568 0.90656 0.88759 0.92317 0.75987 0.92570 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.19 71.98 0.66 -2.95 16 2 C -0.08 -2.68 2.97 -10.79 -0.03 -2.71 16 3 C -0.13 -4.27 9.12 71.98 0.66 -3.61 16 4 C 0.07 2.67 4.09 86.30 0.35 3.03 16 5 N -0.53 -23.62 3.71 -875.51 -3.25 -26.87 16 6 C 0.21 11.37 3.65 85.56 0.31 11.68 16 7 C -0.51 -29.83 8.39 25.60 0.21 -29.62 16 8 H 0.06 3.32 7.55 -2.91 -0.02 3.30 16 9 C 0.00 0.10 5.46 84.66 0.46 0.56 16 10 N -0.93 -56.88 13.28 21.45 0.28 -56.59 16 11 Si 0.96 45.50 29.54 68.60 2.03 47.52 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 15 C 0.10 3.64 2.00 44.92 0.09 3.73 16 16 H 0.08 2.98 6.21 -2.39 -0.01 2.97 16 17 C -0.15 -5.22 4.58 30.59 0.14 -5.08 16 18 C -0.10 -2.61 5.78 30.59 0.18 -2.43 16 19 C -0.15 -3.45 5.64 30.59 0.17 -3.27 16 20 C 0.12 3.06 3.77 30.59 0.12 3.18 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 O -0.57 -13.59 11.97 -148.98 -1.78 -15.38 16 23 C -0.11 -3.81 4.79 30.59 0.15 -3.66 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 2.08 6.73 -2.39 -0.02 2.06 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.74 7.60 -2.39 -0.02 1.73 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.02 0.92 5.89 -2.39 -0.01 0.90 16 32 H 0.05 2.29 6.95 -2.39 -0.02 2.27 16 33 H -0.04 -2.55 7.12 -2.39 -0.02 -2.57 16 34 H 0.01 0.81 5.68 -2.39 -0.01 0.80 16 35 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 36 H 0.03 1.44 6.75 -2.39 -0.02 1.42 16 37 H 0.05 1.89 6.25 -2.39 -0.01 1.88 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.80 7.68 -2.39 -0.02 1.78 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.39 5.22 9.08 -74.05 -0.67 4.55 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.33 6.13 -2.39 -0.01 2.31 16 Total: -1.00 -66.27 328.60 1.04 -65.23 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.29 Total: 17.25 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.47 Total: -31.16 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.96 Total: -83.46 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.78 Total: -15.38 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.27 1.04 -65.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.875 kcal (2) G-P(sol) polarization free energy of solvation -66.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds