Wall clock time and date at job start Mon Mar 30 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47290 * 2 1 4 4 C 1.53002 * 109.46790 * 120.00196 * 2 1 3 5 5 N 1.46900 * 109.46809 * 176.08144 * 4 2 1 6 6 C 1.46901 * 110.99892 * 160.50336 * 5 4 2 7 7 C 1.50701 * 109.47295 * 288.48172 * 6 5 4 8 8 H 1.08002 * 119.99375 * 3.80886 * 7 6 5 9 9 C 1.37875 * 120.00264 * 183.79889 * 7 6 5 10 10 N 1.31514 * 119.99812 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99984 * 0.02562 * 9 7 6 12 12 H 1.48510 * 109.46965 * 89.99899 * 11 9 7 13 13 H 1.48495 * 109.47268 * 209.99488 * 11 9 7 14 14 H 1.48497 * 109.47484 * 329.99980 * 11 9 7 15 15 C 1.46901 * 111.00049 * 284.45184 * 5 4 2 16 16 H 1.09005 * 109.46940 * 55.00411 * 15 5 4 17 17 C 1.53001 * 109.47294 * 295.00702 * 15 5 4 18 18 C 1.52999 * 109.47195 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47000 * 59.99775 * 18 17 15 20 20 C 1.53001 * 109.47305 * 299.99746 * 19 18 17 21 21 H 1.08994 * 109.46911 * 300.00463 * 20 19 18 22 22 O 1.42900 * 109.47038 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47508 * 175.00115 * 15 5 4 24 24 H 1.08992 * 109.47379 * 300.00642 * 1 2 3 25 25 H 1.09005 * 109.46224 * 60.00072 * 1 2 3 26 26 H 1.09002 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47355 * 239.99962 * 2 1 3 28 28 H 1.09001 * 109.47427 * 175.68925 * 3 2 1 29 29 H 1.08998 * 109.47242 * 295.69596 * 3 2 1 30 30 H 1.09006 * 109.47433 * 55.69477 * 3 2 1 31 31 H 1.08991 * 109.47534 * 56.07912 * 4 2 1 32 32 H 1.09001 * 109.46994 * 296.07170 * 4 2 1 33 33 H 1.09003 * 109.47258 * 48.48605 * 6 5 4 34 34 H 1.09000 * 109.47623 * 168.48303 * 6 5 4 35 35 H 0.97008 * 119.99787 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.46889 * 299.99740 * 17 15 5 37 37 H 1.08997 * 109.47458 * 59.99179 * 17 15 5 38 38 H 1.08997 * 109.46930 * 299.99862 * 18 17 15 39 39 H 1.09000 * 109.47112 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.47024 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.47209 * 60.00257 * 19 18 17 42 42 H 0.96704 * 113.99694 * 60.00750 * 22 20 19 43 43 H 1.09005 * 109.46778 * 60.00196 * 23 15 5 44 44 H 1.09000 * 109.47166 * 300.00907 * 23 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5059 -0.8038 1.2029 6 6 4.0617 -1.0535 2.5396 7 6 3.9172 0.1868 3.3834 8 1 3.4037 1.0512 2.9891 9 6 4.4404 0.2178 4.6586 10 7 4.3138 1.3000 5.3951 11 14 5.3289 -1.2773 5.3403 12 1 6.7745 -1.1860 5.0125 13 1 5.1578 -1.3253 6.8145 14 1 4.7612 -2.5090 4.7356 15 6 3.9454 -1.8316 0.2497 16 1 3.5047 -1.6332 -0.7274 17 6 3.4962 -3.2089 0.7416 18 6 3.9534 -4.2793 -0.2515 19 6 5.4789 -4.2509 -0.3653 20 6 5.9281 -2.8736 -0.8573 21 1 5.4871 -2.6751 -1.8341 22 8 7.3530 -2.8470 -0.9630 23 6 5.4709 -1.8031 0.1363 24 1 -0.3634 0.5139 0.8898 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1273 1.4434 0.0772 29 1 1.7411 1.9335 -0.9260 30 1 1.6151 1.9781 0.8489 31 1 1.6204 -1.7266 1.2851 32 1 1.7352 -0.1684 2.1378 33 1 3.5234 -1.8770 3.0089 34 1 5.1168 -1.3123 2.4519 35 1 4.6823 1.3219 6.2922 36 1 3.9369 -3.4073 1.7187 37 1 2.4094 -3.2293 0.8224 38 1 3.5124 -4.0807 -1.2283 39 1 3.6338 -5.2606 0.0992 40 1 5.8047 -5.0138 -1.0725 41 1 5.9199 -4.4495 0.6115 42 1 7.7140 -3.5010 -1.5771 43 1 5.9116 -2.0015 1.1134 44 1 5.7910 -0.8218 -0.2141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712814014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:10 Heat of formation + Delta-G solvation = -70.658988 kcal Electronic energy + Delta-G solvation = -20702.390702 eV Core-core repulsion = 17846.682253 eV Total energy + Delta-G solvation = -2855.708448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49052 -37.18464 -35.12063 -33.67621 -32.23390 -29.92883 -28.89461 -27.38749 -26.60683 -24.49142 -22.37881 -22.17708 -20.79590 -19.69130 -18.56271 -16.97147 -16.75382 -15.48738 -15.20369 -14.60005 -14.43066 -14.11578 -13.67176 -13.55662 -13.43046 -13.30805 -12.59117 -12.42896 -12.31389 -12.17858 -11.80628 -11.58401 -11.38922 -11.10429 -10.97794 -10.79189 -10.64157 -10.55160 -10.48011 -10.34569 -10.18003 -10.05462 -9.81341 -9.67114 -9.57044 -9.18131 -8.50673 -7.24489 -6.00794 -3.96482 3.31099 3.38335 3.39971 4.18071 4.45682 4.70227 4.82263 4.98539 5.16469 5.29883 5.30910 5.36259 5.37865 5.45438 5.54318 5.65105 5.67293 5.70989 5.78254 5.95146 6.01192 6.06830 6.10959 6.15709 6.23701 6.29408 6.33979 6.34973 6.45145 6.52602 6.62419 6.66645 6.69936 6.86714 6.96666 7.04063 7.07127 7.69006 7.71472 7.98605 8.12719 8.71903 9.09882 9.61983 11.12519 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.009417 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.296920 B = 2972.652220 C = 4398.083507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.135 4.135 4 C 0.062 3.938 5 N -0.515 5.515 6 C 0.158 3.842 7 C -0.503 4.503 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.090 3.910 16 H 0.073 0.927 17 C -0.159 4.159 18 C -0.110 4.110 19 C -0.151 4.151 20 C 0.107 3.893 21 H 0.051 0.949 22 O -0.566 6.566 23 C -0.106 4.106 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.086 0.914 33 H -0.013 1.013 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.371 0.629 43 H 0.075 0.925 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 -9.931 -13.698 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.192 4.192 4 C -0.066 4.066 5 N -0.237 5.237 6 C 0.032 3.968 7 C -0.542 4.542 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.541 5.541 11 Si 0.698 3.302 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.020 4.020 16 H 0.091 0.909 17 C -0.199 4.199 18 C -0.148 4.148 19 C -0.189 4.189 20 C 0.048 3.952 21 H 0.069 0.931 22 O -0.371 6.371 23 C -0.144 4.144 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.105 0.895 33 H 0.005 0.995 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.217 0.783 43 H 0.093 0.907 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.979 -8.887 -13.216 16.049 hybrid contribution 0.251 -2.096 0.443 2.157 sum -1.728 -10.983 -12.773 16.934 Atomic orbital electron populations 1.21821 0.96194 1.00876 1.01413 1.21079 0.94086 0.97421 0.98199 1.21683 1.03055 0.94789 0.99703 1.22146 0.88007 0.97919 0.98531 1.62095 1.08244 1.43599 1.09774 1.20243 0.94600 0.96693 0.85237 1.21062 1.36208 0.99507 0.97389 0.90059 1.24878 0.95973 0.95571 0.96881 1.69895 1.46543 1.27523 1.10122 0.86941 0.80794 0.84207 0.78297 1.20146 1.21323 1.19390 1.21584 0.94131 0.89159 0.97120 0.90921 1.22332 1.01222 0.96498 0.99808 1.21386 0.94793 0.98980 0.99629 1.22280 0.96941 0.97457 1.02224 1.21832 0.80366 0.94804 0.98186 0.93061 1.86580 1.21066 1.61354 1.68099 1.21557 0.95115 0.98294 0.99417 0.92611 0.93250 0.93464 0.92342 0.90873 0.94671 0.93075 0.95808 0.89524 0.99514 0.95345 0.92792 0.91404 0.91684 0.92158 0.92229 0.92295 0.91222 0.78299 0.90659 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.19 37.16 0.34 -1.58 16 2 C -0.09 -1.37 2.97 -90.62 -0.27 -1.64 16 3 C -0.13 -2.22 9.12 37.15 0.34 -1.88 16 4 C 0.06 1.14 4.09 -3.82 -0.02 1.12 16 5 N -0.52 -10.27 3.71 -228.08 -0.85 -11.12 16 6 C 0.16 3.76 2.71 -4.97 -0.01 3.74 16 7 C -0.50 -14.15 8.95 -34.44 -0.31 -14.46 16 8 H 0.08 2.48 7.79 -52.49 -0.41 2.07 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 11 Si 0.87 21.79 27.39 -169.99 -4.66 17.13 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.27 -6.49 6.65 56.52 0.38 -6.11 16 15 C 0.09 1.48 2.14 -67.71 -0.14 1.33 16 16 H 0.07 1.11 6.67 -51.93 -0.35 0.76 16 17 C -0.16 -2.42 4.58 -26.73 -0.12 -2.54 16 18 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 19 C -0.15 -1.81 5.54 -26.73 -0.15 -1.96 16 20 C 0.11 1.43 3.47 -26.71 -0.09 1.34 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 O -0.57 -7.67 13.32 -35.23 -0.47 -8.14 16 23 C -0.11 -1.79 4.70 -26.71 -0.13 -1.91 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.86 6.73 -51.93 -0.35 0.51 16 28 H 0.07 1.36 7.60 -51.93 -0.39 0.96 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.02 0.41 5.89 -51.93 -0.31 0.11 16 32 H 0.09 1.84 6.94 -51.93 -0.36 1.48 16 33 H -0.01 -0.31 6.44 -51.93 -0.33 -0.64 16 34 H 0.03 0.69 4.91 -51.93 -0.25 0.44 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 36 H 0.07 1.18 6.75 -51.93 -0.35 0.83 16 37 H 0.06 0.97 6.25 -51.93 -0.32 0.65 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.37 3.15 9.08 45.56 0.41 3.56 16 43 H 0.07 1.45 6.13 -51.93 -0.32 1.13 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -30.67 327.15 -8.23 -38.90 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.14 Total: 3.30 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.82 Total: -18.04 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.07 Total: -38.08 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.47 Total: -8.14 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.66 Total: 17.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.67 -8.23 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.761 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds