Wall clock time and date at job start Mon Mar 30 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47290 * 2 1 4 4 C 1.53002 * 109.46790 * 120.00196 * 2 1 3 5 5 N 1.46900 * 109.46809 * 176.08144 * 4 2 1 6 6 C 1.46901 * 110.99892 * 160.50336 * 5 4 2 7 7 C 1.50701 * 109.47295 * 288.48172 * 6 5 4 8 8 H 1.08002 * 119.99375 * 3.80886 * 7 6 5 9 9 C 1.37875 * 120.00264 * 183.79889 * 7 6 5 10 10 N 1.31514 * 119.99812 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99984 * 0.02562 * 9 7 6 12 12 H 1.48510 * 109.46965 * 89.99899 * 11 9 7 13 13 H 1.48495 * 109.47268 * 209.99488 * 11 9 7 14 14 H 1.48497 * 109.47484 * 329.99980 * 11 9 7 15 15 C 1.46901 * 111.00049 * 284.45184 * 5 4 2 16 16 H 1.09005 * 109.46940 * 55.00411 * 15 5 4 17 17 C 1.53001 * 109.47294 * 295.00702 * 15 5 4 18 18 C 1.52999 * 109.47195 * 179.97438 * 17 15 5 19 19 C 1.52997 * 109.47000 * 59.99775 * 18 17 15 20 20 C 1.53001 * 109.47305 * 299.99746 * 19 18 17 21 21 H 1.08994 * 109.46911 * 300.00463 * 20 19 18 22 22 O 1.42900 * 109.47038 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47508 * 175.00115 * 15 5 4 24 24 H 1.08992 * 109.47379 * 300.00642 * 1 2 3 25 25 H 1.09005 * 109.46224 * 60.00072 * 1 2 3 26 26 H 1.09002 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47355 * 239.99962 * 2 1 3 28 28 H 1.09001 * 109.47427 * 175.68925 * 3 2 1 29 29 H 1.08998 * 109.47242 * 295.69596 * 3 2 1 30 30 H 1.09006 * 109.47433 * 55.69477 * 3 2 1 31 31 H 1.08991 * 109.47534 * 56.07912 * 4 2 1 32 32 H 1.09001 * 109.46994 * 296.07170 * 4 2 1 33 33 H 1.09003 * 109.47258 * 48.48605 * 6 5 4 34 34 H 1.09000 * 109.47623 * 168.48303 * 6 5 4 35 35 H 0.97008 * 119.99787 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.46889 * 299.99740 * 17 15 5 37 37 H 1.08997 * 109.47458 * 59.99179 * 17 15 5 38 38 H 1.08997 * 109.46930 * 299.99862 * 18 17 15 39 39 H 1.09000 * 109.47112 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.47024 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.47209 * 60.00257 * 19 18 17 42 42 H 0.96704 * 113.99694 * 60.00750 * 22 20 19 43 43 H 1.09005 * 109.46778 * 60.00196 * 23 15 5 44 44 H 1.09000 * 109.47166 * 300.00907 * 23 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5059 -0.8038 1.2029 6 6 4.0617 -1.0535 2.5396 7 6 3.9172 0.1868 3.3834 8 1 3.4037 1.0512 2.9891 9 6 4.4404 0.2178 4.6586 10 7 4.3138 1.3000 5.3951 11 14 5.3289 -1.2773 5.3403 12 1 6.7745 -1.1860 5.0125 13 1 5.1578 -1.3253 6.8145 14 1 4.7612 -2.5090 4.7356 15 6 3.9454 -1.8316 0.2497 16 1 3.5047 -1.6332 -0.7274 17 6 3.4962 -3.2089 0.7416 18 6 3.9534 -4.2793 -0.2515 19 6 5.4789 -4.2509 -0.3653 20 6 5.9281 -2.8736 -0.8573 21 1 5.4871 -2.6751 -1.8341 22 8 7.3530 -2.8470 -0.9630 23 6 5.4709 -1.8031 0.1363 24 1 -0.3634 0.5139 0.8898 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1273 1.4434 0.0772 29 1 1.7411 1.9335 -0.9260 30 1 1.6151 1.9781 0.8489 31 1 1.6204 -1.7266 1.2851 32 1 1.7352 -0.1684 2.1378 33 1 3.5234 -1.8770 3.0089 34 1 5.1168 -1.3123 2.4519 35 1 4.6823 1.3219 6.2922 36 1 3.9369 -3.4073 1.7187 37 1 2.4094 -3.2293 0.8224 38 1 3.5124 -4.0807 -1.2283 39 1 3.6338 -5.2606 0.0992 40 1 5.8047 -5.0138 -1.0725 41 1 5.9199 -4.4495 0.6115 42 1 7.7140 -3.5010 -1.5771 43 1 5.9116 -2.0015 1.1134 44 1 5.7910 -0.8218 -0.2141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712814014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:10 Heat of formation + Delta-G solvation = -92.403062 kcal Electronic energy + Delta-G solvation = -20703.333595 eV Core-core repulsion = 17846.682253 eV Total energy + Delta-G solvation = -2856.651342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78466 -38.42267 -36.27713 -35.30222 -34.13553 -31.19242 -30.41076 -28.96439 -27.86159 -26.04781 -24.06113 -23.28551 -22.12026 -20.96699 -19.97704 -18.91895 -18.02532 -16.75485 -16.71744 -16.22498 -15.70169 -15.44158 -15.27706 -14.94753 -14.63900 -14.57227 -14.43683 -13.88828 -13.61092 -13.42517 -13.12021 -12.90682 -12.88468 -12.75341 -12.44572 -12.23099 -12.01910 -11.94719 -11.78505 -11.75839 -11.68828 -11.44517 -11.30104 -11.21789 -11.01322 -10.78954 -10.66050 -8.83146 -8.28315 -6.28595 1.29540 1.30315 1.40362 2.31560 3.00505 3.07955 3.47033 3.75868 3.88589 4.05616 4.08216 4.19397 4.21272 4.26189 4.40276 4.42849 4.52703 4.54835 4.62144 4.71783 4.80682 4.87491 4.90269 4.97351 5.04585 5.04922 5.13707 5.14814 5.17336 5.19896 5.22696 5.26694 5.33097 5.37691 5.50883 5.57413 5.61316 5.66956 6.06000 6.49340 6.72511 6.78584 6.97762 7.33957 8.88584 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.009417 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.296920 B = 2972.652220 C = 4398.083507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.065 3.935 5 N -0.531 5.531 6 C 0.176 3.824 7 C -0.506 4.506 8 H 0.040 0.960 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.937 3.063 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.254 1.254 15 C 0.092 3.908 16 H 0.096 0.904 17 C -0.156 4.156 18 C -0.103 4.103 19 C -0.147 4.147 20 C 0.114 3.886 21 H 0.076 0.924 22 O -0.588 6.588 23 C -0.107 4.107 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.038 0.962 32 H 0.044 0.956 33 H -0.018 1.018 34 H 0.024 0.976 35 H 0.265 0.735 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.394 0.606 43 H 0.042 0.958 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -12.801 -16.293 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.188 4.188 4 C -0.063 4.063 5 N -0.253 5.253 6 C 0.049 3.951 7 C -0.544 4.544 8 H 0.058 0.942 9 C -0.188 4.188 10 N -0.589 5.589 11 Si 0.761 3.239 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.178 1.178 15 C -0.017 4.017 16 H 0.114 0.886 17 C -0.195 4.195 18 C -0.141 4.141 19 C -0.184 4.184 20 C 0.055 3.945 21 H 0.094 0.906 22 O -0.397 6.397 23 C -0.145 4.145 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.000 1.000 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.244 0.756 43 H 0.060 0.940 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.280 -11.780 -15.844 19.875 hybrid contribution 0.335 -1.100 1.194 1.657 sum -1.944 -12.880 -14.651 19.604 Atomic orbital electron populations 1.21775 0.94031 1.02072 1.01890 1.21050 0.95798 0.96084 0.97093 1.21627 1.01027 0.95991 1.00188 1.22116 0.87154 0.98438 0.98547 1.61988 1.09267 1.45826 1.08237 1.19879 0.94475 0.93982 0.86813 1.21320 1.35053 0.99924 0.98134 0.94168 1.25750 0.97025 0.98721 0.97309 1.70046 1.48203 1.29965 1.10715 0.85861 0.79518 0.80712 0.77764 1.19558 1.20534 1.17820 1.21665 0.94012 0.89095 0.96899 0.88588 1.22267 1.01172 0.96637 0.99433 1.21371 0.94749 0.98301 0.99659 1.22249 0.96838 0.97345 1.01999 1.21731 0.80600 0.94193 0.98010 0.90619 1.86523 1.21203 1.62715 1.69258 1.21531 0.95305 0.98851 0.98862 0.93900 0.91048 0.91916 0.90353 0.93711 0.91815 0.95279 0.94370 0.93688 1.00005 0.95791 0.92611 0.94274 0.91342 0.89775 0.90718 0.88864 0.93315 0.75601 0.93958 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.19 71.98 0.66 -2.73 16 2 C -0.08 -2.41 2.97 -10.79 -0.03 -2.44 16 3 C -0.13 -4.34 9.12 71.98 0.66 -3.68 16 4 C 0.07 2.42 4.09 86.30 0.35 2.77 16 5 N -0.53 -21.58 3.71 -875.52 -3.25 -24.82 16 6 C 0.18 8.60 2.71 85.56 0.23 8.84 16 7 C -0.51 -29.98 8.95 25.60 0.23 -29.75 16 8 H 0.04 2.65 7.79 -2.91 -0.02 2.62 16 9 C 0.01 0.53 5.47 84.65 0.46 0.99 16 10 N -0.95 -60.81 13.96 21.45 0.30 -60.52 16 11 Si 0.94 46.06 27.39 68.60 1.88 47.94 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.25 -11.78 6.65 99.48 0.66 -11.11 16 15 C 0.09 2.91 2.14 44.91 0.10 3.01 16 16 H 0.10 2.62 6.67 -2.38 -0.02 2.61 16 17 C -0.16 -4.42 4.58 30.59 0.14 -4.28 16 18 C -0.10 -2.05 5.92 30.59 0.18 -1.87 16 19 C -0.15 -2.99 5.54 30.59 0.17 -2.82 16 20 C 0.11 2.73 3.47 30.61 0.11 2.83 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 O -0.59 -14.60 13.32 -148.98 -1.98 -16.59 16 23 C -0.11 -3.57 4.70 30.61 0.14 -3.43 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 2.05 6.73 -2.39 -0.02 2.03 16 28 H 0.04 1.71 7.60 -2.39 -0.02 1.70 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.04 1.29 5.89 -2.39 -0.01 1.28 16 32 H 0.04 2.02 6.94 -2.39 -0.02 2.01 16 33 H -0.02 -0.88 6.44 -2.39 -0.02 -0.89 16 34 H 0.02 1.21 4.91 -2.39 -0.01 1.20 16 35 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 36 H 0.04 1.33 6.75 -2.38 -0.02 1.31 16 37 H 0.07 1.88 6.25 -2.39 -0.01 1.86 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.39 5.41 9.08 -74.05 -0.67 4.73 16 43 H 0.04 1.66 6.13 -2.38 -0.01 1.64 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -70.75 327.15 0.59 -70.16 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.24 Total: 16.39 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 3.40 Total: -32.56 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.95 Total: -85.34 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.98 Total: -16.59 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -70.75 0.59 -70.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.247 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds