Wall clock time and date at job start Mon Mar 30 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47439 * 120.00237 * 2 1 3 5 5 N 1.46895 * 109.46777 * 65.88720 * 4 2 1 6 6 C 1.46904 * 110.99986 * 200.06765 * 5 4 2 7 7 C 1.50694 * 109.47191 * 71.65789 * 6 5 4 8 8 H 1.07996 * 120.00445 * 5.09067 * 7 6 5 9 9 C 1.37882 * 119.99944 * 185.08458 * 7 6 5 10 10 N 1.31517 * 119.99755 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99987 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47161 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46673 * 120.00354 * 11 9 7 14 14 H 1.48502 * 109.47056 * 239.99909 * 11 9 7 15 15 C 1.46895 * 111.00535 * 76.10868 * 5 4 2 16 16 H 1.08996 * 109.47109 * 310.00504 * 15 5 4 17 17 C 1.53003 * 109.47038 * 69.99808 * 15 5 4 18 18 C 1.52998 * 109.47602 * 180.02562 * 17 15 5 19 19 C 1.53006 * 109.46614 * 300.00205 * 18 17 15 20 20 C 1.52999 * 109.47434 * 59.99932 * 19 18 17 21 21 H 1.08999 * 109.47210 * 59.99934 * 20 19 18 22 22 O 1.42902 * 109.46962 * 179.97438 * 20 19 18 23 23 C 1.53000 * 109.46917 * 299.99756 * 20 19 18 24 24 H 1.09006 * 109.47428 * 55.01258 * 1 2 3 25 25 H 1.08991 * 109.47326 * 295.00970 * 1 2 3 26 26 H 1.09006 * 109.46919 * 175.00865 * 1 2 3 27 27 H 1.09008 * 109.47321 * 240.00370 * 2 1 3 28 28 H 1.09008 * 109.46639 * 59.99953 * 3 2 1 29 29 H 1.08993 * 109.47531 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47042 * 300.00444 * 3 2 1 31 31 H 1.08998 * 109.47053 * 185.88684 * 4 2 1 32 32 H 1.08995 * 109.46775 * 305.88478 * 4 2 1 33 33 H 1.08999 * 109.47368 * 191.66100 * 6 5 4 34 34 H 1.09008 * 109.46685 * 311.65800 * 6 5 4 35 35 H 0.97002 * 119.99554 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47165 * 300.00606 * 17 15 5 37 37 H 1.08999 * 109.47013 * 60.00085 * 17 15 5 38 38 H 1.08999 * 109.47223 * 59.99777 * 18 17 15 39 39 H 1.08999 * 109.47222 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46690 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.46976 * 299.99723 * 19 18 17 42 42 H 0.96695 * 113.99643 * 299.99695 * 22 20 19 43 43 H 1.08999 * 109.47326 * 300.00107 * 23 20 19 44 44 H 1.08999 * 109.46864 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6698 -2.1411 1.1802 6 6 1.7024 -2.7591 2.5125 7 6 0.5432 -2.2510 3.3304 8 1 -0.1945 -1.6047 2.8784 9 6 0.4244 -2.6114 4.6560 10 7 1.3230 -3.3981 5.2066 11 14 -1.0129 -1.9821 5.6697 12 1 -1.8768 -1.1211 4.8226 13 1 -1.8044 -3.1331 6.1740 14 1 -0.5005 -1.1926 6.8183 15 6 2.5369 -2.8664 0.2421 16 1 2.5785 -2.3279 -0.7047 17 6 3.9456 -2.9748 0.8294 18 6 4.8490 -3.7296 -0.1478 19 6 4.2853 -5.1324 -0.3837 20 6 2.8767 -5.0240 -0.9711 21 1 2.9183 -4.4852 -1.9177 22 8 2.3506 -6.3342 -1.1919 23 6 1.9734 -4.2691 0.0062 24 1 -0.3634 0.5893 -0.8420 25 1 -0.3633 0.4344 0.9312 26 1 -0.3633 -1.0238 -0.0894 27 1 1.8933 -0.5138 -0.8901 28 1 1.6766 1.9563 0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.1249 -0.6309 1.3034 32 1 1.5932 -0.2719 2.1360 33 1 1.6297 -3.8421 2.4127 34 1 2.6381 -2.5021 3.0093 35 1 1.2392 -3.6519 6.1391 36 1 4.3472 -1.9755 0.9971 37 1 3.9040 -3.5132 1.7762 38 1 4.8905 -3.1908 -1.0945 39 1 5.8523 -3.8072 0.2708 40 1 4.9292 -5.6703 -1.0796 41 1 4.2438 -5.6711 0.5629 42 1 2.8741 -6.8703 -1.8031 43 1 1.9319 -4.8079 0.9528 44 1 0.9700 -4.1915 -0.4124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712814018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:13 Heat of formation + Delta-G solvation = -77.026214 kcal Electronic energy + Delta-G solvation = -20614.656312 eV Core-core repulsion = 17758.671760 eV Total energy + Delta-G solvation = -2855.984552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.31782 -37.07116 -35.06128 -33.59917 -32.21503 -29.78218 -28.56769 -26.93718 -26.62050 -24.41994 -22.56340 -22.04850 -20.75986 -19.64362 -18.54227 -16.82775 -16.33847 -15.35570 -15.10888 -14.50231 -14.38239 -14.02325 -13.88717 -13.43456 -13.22917 -13.12861 -12.37433 -12.32107 -12.11396 -11.97879 -11.79438 -11.47295 -11.23077 -11.00388 -10.92110 -10.70246 -10.61707 -10.52895 -10.46089 -10.31835 -10.05149 -10.01286 -9.92721 -9.54995 -9.40944 -9.10798 -8.36235 -7.09819 -5.97374 -3.97547 3.33424 3.41175 3.46039 4.28703 4.47940 4.86176 4.95092 5.11913 5.28898 5.36286 5.38143 5.46884 5.47444 5.49895 5.67441 5.73283 5.79130 5.83876 5.90429 5.99450 6.09574 6.15318 6.16735 6.30042 6.31080 6.33503 6.41817 6.50158 6.55445 6.59091 6.64259 6.81940 6.85740 6.95260 6.98785 7.36690 7.45057 7.81118 7.89908 8.20000 8.28510 8.63655 9.11843 9.66345 11.13006 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.007708 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.073105 B = 3631.921457 C = 4749.169468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 C -0.145 4.145 4 C 0.065 3.935 5 N -0.526 5.526 6 C 0.190 3.810 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.092 3.908 16 H 0.066 0.934 17 C -0.157 4.157 18 C -0.109 4.109 19 C -0.150 4.150 20 C 0.108 3.892 21 H 0.049 0.951 22 O -0.567 6.567 23 C -0.103 4.103 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.021 0.979 32 H 0.082 0.918 33 H 0.031 0.969 34 H -0.004 1.004 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.370 0.630 43 H 0.078 0.922 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 1.650 -12.803 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.063 4.063 5 N -0.249 5.249 6 C 0.065 3.935 7 C -0.540 4.540 8 H 0.082 0.918 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.213 1.213 15 C -0.017 4.017 16 H 0.085 0.915 17 C -0.196 4.196 18 C -0.148 4.148 19 C -0.188 4.188 20 C 0.048 3.952 21 H 0.067 0.933 22 O -0.371 6.371 23 C -0.140 4.140 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.014 0.986 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.216 0.784 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.865 1.764 -12.365 13.405 hybrid contribution 0.673 0.107 0.658 0.947 sum 5.538 1.871 -11.707 13.085 Atomic orbital electron populations 1.21655 0.94878 1.02292 1.00100 1.21108 0.96651 0.94584 0.98607 1.21821 1.00293 0.96938 1.01232 1.22080 0.96741 0.89644 0.97832 1.62215 1.49509 1.01032 1.12137 1.19784 0.96134 0.94915 0.82667 1.21242 1.08977 1.29446 0.94350 0.91815 1.24982 0.96359 0.95472 0.97880 1.69970 1.34961 1.35999 1.13001 0.86513 0.82639 0.78627 0.80083 1.19680 1.21123 1.21254 1.21514 0.89811 0.93871 0.96507 0.91549 1.22306 0.96995 1.00296 1.00028 1.21389 0.98729 0.95195 0.99459 1.22267 0.96630 0.97936 1.01976 1.21830 0.92553 0.83274 0.97493 0.93340 1.86578 1.54753 1.26843 1.68948 1.21491 0.98546 0.94531 0.99463 0.94683 0.93058 0.91444 0.92259 0.92765 0.93401 0.93325 0.96071 0.89935 0.95136 0.98616 0.93143 0.92150 0.90726 0.92454 0.92288 0.92487 0.91015 0.78412 0.90354 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.03 37.15 0.34 -1.79 16 2 C -0.09 -1.42 2.98 -90.62 -0.27 -1.69 16 3 C -0.14 -1.93 9.19 37.16 0.34 -1.59 16 4 C 0.07 1.23 4.10 -3.83 -0.02 1.22 16 5 N -0.53 -10.85 3.91 -228.09 -0.89 -11.74 16 6 C 0.19 4.80 3.46 -4.98 -0.02 4.78 16 7 C -0.50 -13.92 8.28 -34.44 -0.29 -14.21 16 8 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 11 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.09 1.61 2.10 -67.71 -0.14 1.47 16 16 H 0.07 1.07 6.58 -51.93 -0.34 0.73 16 17 C -0.16 -2.61 4.52 -26.73 -0.12 -2.73 16 18 C -0.11 -1.44 5.92 -26.73 -0.16 -1.60 16 19 C -0.15 -1.96 5.54 -26.73 -0.15 -2.11 16 20 C 0.11 1.53 3.47 -26.73 -0.09 1.44 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 O -0.57 -8.08 13.32 -35.23 -0.47 -8.55 16 23 C -0.10 -1.81 4.82 -26.73 -0.13 -1.94 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 27 H 0.06 0.90 6.66 -51.92 -0.35 0.56 16 28 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.39 6.17 -51.93 -0.32 0.07 16 32 H 0.08 1.76 7.10 -51.93 -0.37 1.40 16 33 H 0.03 0.83 5.95 -51.93 -0.31 0.52 16 34 H 0.00 -0.11 7.12 -51.92 -0.37 -0.48 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 1.00 6.45 -51.93 -0.33 0.66 16 37 H 0.07 1.45 6.68 -51.93 -0.35 1.10 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.37 3.39 9.08 45.56 0.41 3.80 16 43 H 0.08 1.62 6.29 -51.93 -0.33 1.29 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -29.88 331.93 -8.70 -38.58 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.26 Total: 3.21 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.80 Total: -17.32 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.16 Total: -37.72 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.47 Total: -8.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.88 -8.70 -38.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.442 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds