Wall clock time and date at job start Mon Mar 30 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47439 * 120.00237 * 2 1 3 5 5 N 1.46895 * 109.46777 * 65.88720 * 4 2 1 6 6 C 1.46904 * 110.99986 * 200.06765 * 5 4 2 7 7 C 1.50694 * 109.47191 * 71.65789 * 6 5 4 8 8 H 1.07996 * 120.00445 * 5.09067 * 7 6 5 9 9 C 1.37882 * 119.99944 * 185.08458 * 7 6 5 10 10 N 1.31517 * 119.99755 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99987 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47161 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46673 * 120.00354 * 11 9 7 14 14 H 1.48502 * 109.47056 * 239.99909 * 11 9 7 15 15 C 1.46895 * 111.00535 * 76.10868 * 5 4 2 16 16 H 1.08996 * 109.47109 * 310.00504 * 15 5 4 17 17 C 1.53003 * 109.47038 * 69.99808 * 15 5 4 18 18 C 1.52998 * 109.47602 * 180.02562 * 17 15 5 19 19 C 1.53006 * 109.46614 * 300.00205 * 18 17 15 20 20 C 1.52999 * 109.47434 * 59.99932 * 19 18 17 21 21 H 1.08999 * 109.47210 * 59.99934 * 20 19 18 22 22 O 1.42902 * 109.46962 * 179.97438 * 20 19 18 23 23 C 1.53000 * 109.46917 * 299.99756 * 20 19 18 24 24 H 1.09006 * 109.47428 * 55.01258 * 1 2 3 25 25 H 1.08991 * 109.47326 * 295.00970 * 1 2 3 26 26 H 1.09006 * 109.46919 * 175.00865 * 1 2 3 27 27 H 1.09008 * 109.47321 * 240.00370 * 2 1 3 28 28 H 1.09008 * 109.46639 * 59.99953 * 3 2 1 29 29 H 1.08993 * 109.47531 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47042 * 300.00444 * 3 2 1 31 31 H 1.08998 * 109.47053 * 185.88684 * 4 2 1 32 32 H 1.08995 * 109.46775 * 305.88478 * 4 2 1 33 33 H 1.08999 * 109.47368 * 191.66100 * 6 5 4 34 34 H 1.09008 * 109.46685 * 311.65800 * 6 5 4 35 35 H 0.97002 * 119.99554 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.47165 * 300.00606 * 17 15 5 37 37 H 1.08999 * 109.47013 * 60.00085 * 17 15 5 38 38 H 1.08999 * 109.47223 * 59.99777 * 18 17 15 39 39 H 1.08999 * 109.47222 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.46690 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.46976 * 299.99723 * 19 18 17 42 42 H 0.96695 * 113.99643 * 299.99695 * 22 20 19 43 43 H 1.08999 * 109.47326 * 300.00107 * 23 20 19 44 44 H 1.08999 * 109.46864 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6698 -2.1411 1.1802 6 6 1.7024 -2.7591 2.5125 7 6 0.5432 -2.2510 3.3304 8 1 -0.1945 -1.6047 2.8784 9 6 0.4244 -2.6114 4.6560 10 7 1.3230 -3.3981 5.2066 11 14 -1.0129 -1.9821 5.6697 12 1 -1.8768 -1.1211 4.8226 13 1 -1.8044 -3.1331 6.1740 14 1 -0.5005 -1.1926 6.8183 15 6 2.5369 -2.8664 0.2421 16 1 2.5785 -2.3279 -0.7047 17 6 3.9456 -2.9748 0.8294 18 6 4.8490 -3.7296 -0.1478 19 6 4.2853 -5.1324 -0.3837 20 6 2.8767 -5.0240 -0.9711 21 1 2.9183 -4.4852 -1.9177 22 8 2.3506 -6.3342 -1.1919 23 6 1.9734 -4.2691 0.0062 24 1 -0.3634 0.5893 -0.8420 25 1 -0.3633 0.4344 0.9312 26 1 -0.3633 -1.0238 -0.0894 27 1 1.8933 -0.5138 -0.8901 28 1 1.6766 1.9563 0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.1249 -0.6309 1.3034 32 1 1.5932 -0.2719 2.1360 33 1 1.6297 -3.8421 2.4127 34 1 2.6381 -2.5021 3.0093 35 1 1.2392 -3.6519 6.1391 36 1 4.3472 -1.9755 0.9971 37 1 3.9040 -3.5132 1.7762 38 1 4.8905 -3.1908 -1.0945 39 1 5.8523 -3.8072 0.2708 40 1 4.9292 -5.6703 -1.0796 41 1 4.2438 -5.6711 0.5629 42 1 2.8741 -6.8703 -1.8031 43 1 1.9319 -4.8079 0.9528 44 1 0.9700 -4.1915 -0.4124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712814018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:12 Heat of formation + Delta-G solvation = -97.470264 kcal Electronic energy + Delta-G solvation = -20615.542832 eV Core-core repulsion = 17758.671760 eV Total energy + Delta-G solvation = -2856.871072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71146 -38.39167 -36.28274 -35.31804 -34.04222 -31.14212 -30.06818 -28.71009 -27.83962 -26.09766 -24.32037 -23.28759 -22.13374 -20.95499 -20.01383 -18.43695 -18.03432 -16.79826 -16.65422 -16.27020 -15.70371 -15.37854 -15.33241 -14.75189 -14.60795 -14.47326 -14.15551 -13.73556 -13.59429 -13.40698 -13.09782 -12.89514 -12.81689 -12.74219 -12.40637 -12.37545 -12.14339 -11.95735 -11.75124 -11.70738 -11.62048 -11.45157 -11.28212 -11.14179 -10.97788 -10.72738 -10.53533 -8.82169 -8.17586 -6.26610 1.37351 1.38500 1.51753 2.39721 3.08398 3.13820 3.52290 3.76479 3.89909 4.07647 4.09547 4.20924 4.23549 4.28348 4.40809 4.46320 4.54605 4.56460 4.62912 4.74231 4.91091 4.92294 4.96114 5.03049 5.07196 5.12700 5.15149 5.20278 5.21563 5.23424 5.29218 5.34558 5.36695 5.41619 5.54106 5.59738 5.66895 5.71029 6.14890 6.46843 6.75132 6.92287 6.98751 7.42560 8.92336 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.007708 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.073105 B = 3631.921457 C = 4749.169468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.140 4.140 4 C 0.068 3.932 5 N -0.533 5.533 6 C 0.214 3.786 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.278 1.278 15 C 0.094 3.906 16 H 0.095 0.905 17 C -0.152 4.152 18 C -0.102 4.102 19 C -0.146 4.146 20 C 0.115 3.885 21 H 0.079 0.921 22 O -0.588 6.588 23 C -0.101 4.101 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.049 0.951 33 H 0.001 0.999 34 H -0.036 1.036 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.394 0.606 43 H 0.033 0.967 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 2.768 -15.324 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.101 4.101 3 C -0.197 4.197 4 C -0.060 4.060 5 N -0.256 5.256 6 C 0.088 3.912 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.188 1.188 13 H -0.206 1.206 14 H -0.204 1.204 15 C -0.015 4.015 16 H 0.113 0.887 17 C -0.191 4.191 18 C -0.140 4.140 19 C -0.184 4.184 20 C 0.056 3.944 21 H 0.097 0.903 22 O -0.396 6.396 23 C -0.139 4.139 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.019 0.981 34 H -0.018 1.018 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.244 0.756 43 H 0.052 0.948 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.386 2.880 -14.917 16.119 hybrid contribution 0.519 -0.279 1.418 1.535 sum 5.904 2.601 -13.499 14.962 Atomic orbital electron populations 1.21611 0.95299 1.01211 1.00463 1.21066 0.96212 0.95980 0.96892 1.21776 1.00935 0.94960 1.02069 1.22088 0.96849 0.88517 0.98578 1.62142 1.51311 1.02191 1.09915 1.19299 0.93830 0.93258 0.84841 1.21548 1.09495 1.29230 0.95075 0.92239 1.25871 0.99129 0.95604 0.99172 1.70103 1.36877 1.37216 1.13429 0.85434 0.79209 0.78188 0.78418 1.18817 1.20634 1.20401 1.21611 0.89674 0.93640 0.96568 0.88700 1.22205 0.97404 1.00294 0.99185 1.21373 0.98166 0.94898 0.99577 1.22238 0.96626 0.98015 1.01484 1.21716 0.91819 0.83358 0.97505 0.90327 1.86522 1.55877 1.27176 1.70073 1.21434 0.99131 0.94944 0.98402 0.91736 0.94737 0.93721 0.90820 0.93489 0.92402 0.90935 0.95631 0.93236 0.98131 1.01798 0.92961 0.92174 0.95011 0.89520 0.91049 0.88664 0.93861 0.75609 0.94816 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.03 71.98 0.65 -3.35 16 2 C -0.08 -2.44 2.98 -10.79 -0.03 -2.48 16 3 C -0.14 -3.34 9.19 71.98 0.66 -2.67 16 4 C 0.07 2.59 4.10 86.30 0.35 2.95 16 5 N -0.53 -22.85 3.91 -875.55 -3.43 -26.27 16 6 C 0.21 11.58 3.46 85.55 0.30 11.88 16 7 C -0.51 -29.99 8.28 25.60 0.21 -29.78 16 8 H 0.06 3.44 7.80 -2.91 -0.02 3.42 16 9 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 10 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 11 Si 0.96 45.87 29.54 68.60 2.03 47.89 16 12 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 C 0.09 3.28 2.10 44.92 0.09 3.38 16 16 H 0.10 2.82 6.58 -2.39 -0.02 2.81 16 17 C -0.15 -5.08 4.52 30.59 0.14 -4.94 16 18 C -0.10 -2.45 5.92 30.60 0.18 -2.26 16 19 C -0.15 -3.51 5.54 30.60 0.17 -3.34 16 20 C 0.11 3.07 3.47 30.59 0.11 3.17 16 21 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 22 O -0.59 -15.93 13.32 -148.98 -1.98 -17.91 16 23 C -0.10 -3.68 4.82 30.59 0.15 -3.53 16 24 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.57 7.92 -2.38 -0.02 1.55 16 27 H 0.07 2.00 6.66 -2.38 -0.02 1.98 16 28 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.03 0.95 6.17 -2.39 -0.01 0.93 16 32 H 0.05 2.20 7.10 -2.39 -0.02 2.19 16 33 H 0.00 0.04 5.95 -2.39 -0.01 0.03 16 34 H -0.04 -2.12 7.12 -2.38 -0.02 -2.13 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.06 1.98 6.45 -2.39 -0.02 1.97 16 37 H 0.03 1.32 6.68 -2.39 -0.02 1.30 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 42 H 0.39 6.16 9.08 -74.06 -0.67 5.49 16 43 H 0.03 1.50 6.29 -2.39 -0.02 1.49 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.12 331.93 0.62 -68.49 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.28 Total: 16.01 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.44 Total: -30.55 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.14 Total: -83.93 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -1.98 Total: -17.91 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -69.12 0.62 -68.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.976 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds