Wall clock time and date at job start Mon Mar 30 2020 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 C 1.53004 * 109.46949 * 120.00270 * 2 1 3 5 5 N 1.46899 * 109.46859 * 173.41787 * 4 2 1 6 6 C 1.46899 * 111.00288 * 312.21674 * 5 4 2 7 7 C 1.50693 * 109.47358 * 300.59207 * 6 5 4 8 8 H 1.08007 * 120.00113 * 354.88839 * 7 6 5 9 9 C 1.37876 * 120.00313 * 174.89761 * 7 6 5 10 10 N 1.31519 * 119.99858 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00359 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47062 * 89.99458 * 11 9 7 13 13 H 1.48500 * 109.46750 * 329.99787 * 11 9 7 14 14 H 1.48499 * 109.47223 * 209.99624 * 11 9 7 15 15 C 1.46904 * 110.99951 * 76.17475 * 5 4 2 16 16 H 1.09000 * 109.46686 * 297.46056 * 15 5 4 17 17 C 1.52999 * 109.47122 * 57.46138 * 15 5 4 18 18 C 1.52994 * 109.47099 * 179.97438 * 17 15 5 19 19 C 1.53003 * 109.47681 * 300.00587 * 18 17 15 20 20 C 1.52998 * 109.46962 * 59.99522 * 19 18 17 21 21 H 1.09001 * 109.46851 * 180.02562 * 20 19 18 22 22 O 1.42893 * 109.47243 * 60.00419 * 20 19 18 23 23 C 1.52997 * 109.47547 * 300.00218 * 20 19 18 24 24 H 1.08995 * 109.47016 * 299.99516 * 1 2 3 25 25 H 1.08997 * 109.46983 * 59.99675 * 1 2 3 26 26 H 1.09005 * 109.46617 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46928 * 240.00114 * 2 1 3 28 28 H 1.08995 * 109.47736 * 205.42783 * 3 2 1 29 29 H 1.09000 * 109.47115 * 325.43590 * 3 2 1 30 30 H 1.09007 * 109.46820 * 85.42748 * 3 2 1 31 31 H 1.09006 * 109.47098 * 53.42121 * 4 2 1 32 32 H 1.08999 * 109.47088 * 293.41650 * 4 2 1 33 33 H 1.09004 * 109.47412 * 180.58535 * 6 5 4 34 34 H 1.09006 * 109.46800 * 60.59034 * 6 5 4 35 35 H 0.97000 * 119.99968 * 0.02562 * 10 9 7 36 36 H 1.08992 * 109.47349 * 300.00060 * 17 15 5 37 37 H 1.09004 * 109.46984 * 60.00143 * 17 15 5 38 38 H 1.09000 * 109.47470 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46886 * 60.00327 * 18 17 15 40 40 H 1.09004 * 109.46748 * 299.99825 * 19 18 17 41 41 H 1.08998 * 109.47449 * 179.97438 * 19 18 17 42 42 H 0.96704 * 114.00169 * 60.00250 * 22 20 19 43 43 H 1.09001 * 109.47516 * 300.00674 * 23 20 19 44 44 H 1.08993 * 109.47645 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5004 -0.8603 1.1725 6 6 3.9121 -1.3734 -0.1410 7 6 3.2739 -2.7178 -0.3778 8 1 2.6943 -3.1857 0.4043 9 6 3.4299 -3.3506 -1.5928 10 7 4.1353 -2.7807 -2.5453 11 14 2.6393 -5.0175 -1.8861 12 1 1.2750 -4.8274 -2.4410 13 1 2.5525 -5.7570 -0.6013 14 1 3.4618 -5.7929 -2.8491 15 6 4.1670 0.4139 1.4726 16 1 3.8843 1.1563 0.7262 17 6 3.7412 0.8978 2.8602 18 6 4.4360 2.2245 3.1730 19 6 5.9527 2.0251 3.1455 20 6 6.3784 1.5412 1.7579 21 1 7.4588 1.3986 1.7385 22 8 6.0083 2.5148 0.7796 23 6 5.6837 0.2143 1.4451 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.0362 1.4757 -0.4412 29 1 1.3633 2.0671 -0.5830 30 1 2.0839 1.8123 1.0245 31 1 1.5837 -1.7094 1.3100 32 1 1.7761 -0.1440 2.1353 33 1 4.9970 -1.4765 -0.1671 34 1 3.5945 -0.6784 -0.9183 35 1 4.5462 -1.9153 -2.3929 36 1 2.6608 1.0396 2.8798 37 1 4.0239 0.1553 3.6065 38 1 4.1323 2.5696 4.1613 39 1 4.1537 2.9673 2.4267 40 1 6.2350 1.2824 3.8917 41 1 6.4476 2.9704 3.3679 42 1 6.4128 3.3825 0.9156 43 1 5.9659 -0.5284 2.1913 44 1 5.9866 -0.1302 0.4564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712814022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:16 Heat of formation + Delta-G solvation = -59.501936 kcal Electronic energy + Delta-G solvation = -21163.292104 eV Core-core repulsion = 18308.067461 eV Total energy + Delta-G solvation = -2855.224642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.63143 -37.42409 -34.56125 -33.42906 -32.20157 -29.90373 -29.07795 -26.79750 -26.37856 -24.52640 -22.66971 -21.72621 -20.68866 -19.45532 -18.85444 -16.73763 -16.57701 -15.92493 -15.21897 -14.40683 -14.32899 -14.08920 -13.62878 -13.50284 -13.16140 -12.91754 -12.47299 -12.12519 -12.07217 -12.01658 -11.67495 -11.47881 -11.19896 -11.08412 -10.89829 -10.81818 -10.68966 -10.50868 -10.44269 -10.14263 -10.09197 -10.02807 -9.76173 -9.49451 -9.22079 -8.49558 -8.28019 -6.97711 -6.27881 -3.95676 3.47270 3.51347 3.66999 4.42181 4.57146 4.76688 4.88988 4.99857 5.22145 5.44784 5.47238 5.52310 5.54776 5.61532 5.63081 5.69143 5.75624 5.78509 5.94459 6.03486 6.08657 6.13664 6.23792 6.24239 6.27288 6.36143 6.42843 6.45005 6.54051 6.59501 6.68668 6.72749 6.86477 6.93839 7.10757 7.29881 7.36229 7.78818 7.97520 8.16517 8.49522 8.70828 8.97935 9.74404 11.11073 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.007148 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.833721 B = 3916.035887 C = 4532.776016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C -0.147 4.147 4 C 0.076 3.924 5 N -0.528 5.528 6 C 0.178 3.822 7 C -0.582 4.582 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.917 5.917 11 Si 1.070 2.930 12 H -0.290 1.290 13 H -0.289 1.289 14 H -0.286 1.286 15 C 0.064 3.936 16 H 0.071 0.929 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.149 4.149 20 C 0.106 3.894 21 H 0.049 0.951 22 O -0.559 6.559 23 C -0.106 4.106 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.018 0.982 34 H -0.009 1.009 35 H 0.267 0.733 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.368 0.632 43 H 0.076 0.924 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 10.961 10.024 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C -0.203 4.203 4 C -0.053 4.053 5 N -0.251 5.251 6 C 0.053 3.947 7 C -0.621 4.621 8 H 0.073 0.927 9 C -0.190 4.190 10 N -0.554 5.554 11 Si 0.899 3.101 12 H -0.217 1.217 13 H -0.215 1.215 14 H -0.212 1.212 15 C -0.045 4.045 16 H 0.088 0.912 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.187 4.187 20 C 0.047 3.953 21 H 0.067 0.933 22 O -0.364 6.364 23 C -0.144 4.144 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.008 0.992 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.213 0.787 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.094 8.878 9.034 12.666 hybrid contribution 0.353 2.227 0.802 2.393 sum 0.259 11.105 9.836 14.837 Atomic orbital electron populations 1.21742 0.96247 1.01259 1.00189 1.21844 0.95126 0.95873 1.02879 1.22182 1.00612 0.96741 1.00799 1.22085 0.88878 0.99614 0.94694 1.62292 1.05244 1.23944 1.33631 1.19908 0.95661 0.95062 0.84086 1.21998 1.35041 1.03857 1.01230 0.92729 1.25750 0.96438 1.04214 0.92581 1.70757 1.31902 1.17918 1.34830 0.83522 0.75928 0.75166 0.75466 1.21662 1.21504 1.21172 1.21991 0.93104 0.93001 0.96368 0.91194 1.21678 0.99629 0.96038 0.97791 1.21412 0.94493 0.98344 1.00708 1.22235 0.97323 1.01005 0.98140 1.21840 0.96914 0.89588 0.86944 0.93273 1.86623 1.73915 1.23266 1.52580 1.21637 0.95847 0.93867 1.03015 0.93824 0.93664 0.92766 0.88712 0.92096 0.94013 0.93118 0.90974 0.92861 0.96378 0.99158 0.92279 0.91983 0.91938 0.92666 0.91747 0.91186 0.92432 0.78667 0.90583 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.06 37.16 0.34 -1.92 16 2 C -0.14 -2.66 2.39 -90.62 -0.22 -2.88 16 3 C -0.15 -2.56 7.68 37.15 0.29 -2.27 16 4 C 0.08 1.50 4.38 -3.82 -0.02 1.49 16 5 N -0.53 -11.39 4.62 -228.07 -1.05 -12.45 16 6 C 0.18 4.57 3.22 -4.98 -0.02 4.56 16 7 C -0.58 -16.41 8.05 -34.44 -0.28 -16.68 16 8 H 0.05 1.56 6.89 -52.48 -0.36 1.19 16 9 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 10 N -0.92 -28.11 13.65 55.43 0.76 -27.35 16 11 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.06 1.15 1.17 -67.71 -0.08 1.07 16 16 H 0.07 1.35 3.31 -51.93 -0.17 1.18 16 17 C -0.11 -1.72 4.52 -26.73 -0.12 -1.84 16 18 C -0.11 -1.39 5.78 -26.73 -0.15 -1.54 16 19 C -0.15 -1.72 5.64 -26.73 -0.15 -1.87 16 20 C 0.11 1.45 3.77 -26.73 -0.10 1.35 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 O -0.56 -7.82 11.97 -35.23 -0.42 -8.25 16 23 C -0.11 -1.86 4.67 -26.73 -0.12 -1.98 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 2.25 5.58 -51.93 -0.29 1.96 16 28 H 0.06 1.18 5.82 -51.93 -0.30 0.88 16 29 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 30 H 0.05 0.82 5.87 -51.92 -0.30 0.51 16 31 H 0.07 1.56 6.99 -51.93 -0.36 1.20 16 32 H 0.05 0.94 5.35 -51.93 -0.28 0.66 16 33 H 0.02 0.50 6.09 -51.93 -0.32 0.19 16 34 H -0.01 -0.25 5.33 -51.93 -0.28 -0.52 16 35 H 0.27 8.21 7.19 -40.82 -0.29 7.92 16 36 H 0.06 0.94 5.19 -51.93 -0.27 0.67 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.37 3.37 9.08 45.56 0.41 3.78 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.07 1.47 6.30 -51.93 -0.33 1.14 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -30.85 315.05 -8.33 -39.18 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.55 Total: 5.68 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -0.73 Total: -22.22 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: -0.30 Total: -39.80 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.42 Total: -8.25 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.85 -8.33 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.320 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds