Wall clock time and date at job start Mon Mar 30 2020 07:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 C 1.53004 * 109.46949 * 120.00270 * 2 1 3 5 5 N 1.46899 * 109.46859 * 173.41787 * 4 2 1 6 6 C 1.46899 * 111.00288 * 312.21674 * 5 4 2 7 7 C 1.50693 * 109.47358 * 300.59207 * 6 5 4 8 8 H 1.08007 * 120.00113 * 354.88839 * 7 6 5 9 9 C 1.37876 * 120.00313 * 174.89761 * 7 6 5 10 10 N 1.31519 * 119.99858 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00359 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47062 * 89.99458 * 11 9 7 13 13 H 1.48500 * 109.46750 * 329.99787 * 11 9 7 14 14 H 1.48499 * 109.47223 * 209.99624 * 11 9 7 15 15 C 1.46904 * 110.99951 * 76.17475 * 5 4 2 16 16 H 1.09000 * 109.46686 * 297.46056 * 15 5 4 17 17 C 1.52999 * 109.47122 * 57.46138 * 15 5 4 18 18 C 1.52994 * 109.47099 * 179.97438 * 17 15 5 19 19 C 1.53003 * 109.47681 * 300.00587 * 18 17 15 20 20 C 1.52998 * 109.46962 * 59.99522 * 19 18 17 21 21 H 1.09001 * 109.46851 * 180.02562 * 20 19 18 22 22 O 1.42893 * 109.47243 * 60.00419 * 20 19 18 23 23 C 1.52997 * 109.47547 * 300.00218 * 20 19 18 24 24 H 1.08995 * 109.47016 * 299.99516 * 1 2 3 25 25 H 1.08997 * 109.46983 * 59.99675 * 1 2 3 26 26 H 1.09005 * 109.46617 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46928 * 240.00114 * 2 1 3 28 28 H 1.08995 * 109.47736 * 205.42783 * 3 2 1 29 29 H 1.09000 * 109.47115 * 325.43590 * 3 2 1 30 30 H 1.09007 * 109.46820 * 85.42748 * 3 2 1 31 31 H 1.09006 * 109.47098 * 53.42121 * 4 2 1 32 32 H 1.08999 * 109.47088 * 293.41650 * 4 2 1 33 33 H 1.09004 * 109.47412 * 180.58535 * 6 5 4 34 34 H 1.09006 * 109.46800 * 60.59034 * 6 5 4 35 35 H 0.97000 * 119.99968 * 0.02562 * 10 9 7 36 36 H 1.08992 * 109.47349 * 300.00060 * 17 15 5 37 37 H 1.09004 * 109.46984 * 60.00143 * 17 15 5 38 38 H 1.09000 * 109.47470 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46886 * 60.00327 * 18 17 15 40 40 H 1.09004 * 109.46748 * 299.99825 * 19 18 17 41 41 H 1.08998 * 109.47449 * 179.97438 * 19 18 17 42 42 H 0.96704 * 114.00169 * 60.00250 * 22 20 19 43 43 H 1.09001 * 109.47516 * 300.00674 * 23 20 19 44 44 H 1.08993 * 109.47645 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5004 -0.8603 1.1725 6 6 3.9121 -1.3734 -0.1410 7 6 3.2739 -2.7178 -0.3778 8 1 2.6943 -3.1857 0.4043 9 6 3.4299 -3.3506 -1.5928 10 7 4.1353 -2.7807 -2.5453 11 14 2.6393 -5.0175 -1.8861 12 1 1.2750 -4.8274 -2.4410 13 1 2.5525 -5.7570 -0.6013 14 1 3.4618 -5.7929 -2.8491 15 6 4.1670 0.4139 1.4726 16 1 3.8843 1.1563 0.7262 17 6 3.7412 0.8978 2.8602 18 6 4.4360 2.2245 3.1730 19 6 5.9527 2.0251 3.1455 20 6 6.3784 1.5412 1.7579 21 1 7.4588 1.3986 1.7385 22 8 6.0083 2.5148 0.7796 23 6 5.6837 0.2143 1.4451 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.0362 1.4757 -0.4412 29 1 1.3633 2.0671 -0.5830 30 1 2.0839 1.8123 1.0245 31 1 1.5837 -1.7094 1.3100 32 1 1.7761 -0.1440 2.1353 33 1 4.9970 -1.4765 -0.1671 34 1 3.5945 -0.6784 -0.9183 35 1 4.5462 -1.9153 -2.3929 36 1 2.6608 1.0396 2.8798 37 1 4.0239 0.1553 3.6065 38 1 4.1323 2.5696 4.1613 39 1 4.1537 2.9673 2.4267 40 1 6.2350 1.2824 3.8917 41 1 6.4476 2.9704 3.3679 42 1 6.4128 3.3825 0.9156 43 1 5.9659 -0.5284 2.1913 44 1 5.9866 -0.1302 0.4564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712814022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:15 Heat of formation + Delta-G solvation = -81.672906 kcal Electronic energy + Delta-G solvation = -21164.253509 eV Core-core repulsion = 18308.067461 eV Total energy + Delta-G solvation = -2856.186048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04343 -38.78320 -35.78844 -35.39235 -33.89512 -31.17905 -30.50874 -28.39766 -28.03862 -26.28894 -24.35780 -23.08931 -22.05115 -20.84923 -20.40120 -18.72921 -17.79754 -17.42372 -16.62330 -16.03081 -15.72747 -15.57574 -15.35891 -14.98479 -14.53805 -14.34485 -13.88606 -13.81605 -13.50637 -13.24753 -13.18708 -13.01727 -12.71826 -12.58745 -12.52129 -12.50276 -12.18443 -12.03260 -11.95391 -11.65057 -11.57895 -11.37727 -11.25530 -10.95240 -10.60136 -10.53874 -10.45901 -8.77340 -8.61540 -6.31725 1.49881 1.59490 1.77125 2.55777 3.19212 3.26245 3.41545 3.74017 3.94978 3.97941 4.08251 4.08643 4.21215 4.28699 4.34323 4.49974 4.54469 4.61758 4.64766 4.68436 4.74647 4.79188 4.89654 4.93855 4.99787 5.00757 5.05186 5.10929 5.15399 5.22707 5.26723 5.29633 5.32477 5.37033 5.46371 5.58467 5.59831 5.91353 6.08256 6.51023 6.54686 6.80439 6.97890 7.48233 8.74931 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.007148 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.833721 B = 3916.035887 C = 4532.776016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 C -0.134 4.134 4 C 0.077 3.923 5 N -0.538 5.538 6 C 0.199 3.801 7 C -0.587 4.587 8 H 0.049 0.951 9 C -0.039 4.039 10 N -0.941 5.941 11 Si 1.118 2.882 12 H -0.274 1.274 13 H -0.271 1.271 14 H -0.284 1.284 15 C 0.063 3.937 16 H 0.061 0.939 17 C -0.108 4.108 18 C -0.107 4.107 19 C -0.142 4.142 20 C 0.111 3.889 21 H 0.062 0.938 22 O -0.581 6.581 23 C -0.109 4.109 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.085 0.915 33 H -0.010 1.010 34 H -0.034 1.034 35 H 0.251 0.749 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.390 0.610 43 H 0.071 0.929 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 12.370 12.283 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.191 4.191 4 C -0.051 4.051 5 N -0.261 5.261 6 C 0.073 3.927 7 C -0.625 4.625 8 H 0.067 0.933 9 C -0.235 4.235 10 N -0.579 5.579 11 Si 0.940 3.060 12 H -0.200 1.200 13 H -0.196 1.196 14 H -0.210 1.210 15 C -0.045 4.045 16 H 0.079 0.921 17 C -0.145 4.145 18 C -0.145 4.145 19 C -0.179 4.179 20 C 0.052 3.948 21 H 0.080 0.920 22 O -0.389 6.389 23 C -0.147 4.147 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.008 0.992 34 H -0.016 1.016 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.239 0.761 43 H 0.090 0.910 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.074 10.326 11.321 15.360 hybrid contribution 0.690 1.835 0.112 1.964 sum -0.384 12.161 11.433 16.696 Atomic orbital electron populations 1.21688 0.93630 1.01422 1.02081 1.21711 0.97334 0.96404 1.00023 1.22039 0.99309 0.95660 1.02051 1.22103 0.87617 0.99046 0.96311 1.62216 1.06740 1.26512 1.30594 1.19479 0.93555 0.93935 0.85777 1.22271 1.34451 1.04752 1.01027 0.93253 1.27276 0.96225 1.07500 0.92541 1.70892 1.33654 1.17641 1.35715 0.82923 0.75722 0.71122 0.76265 1.19954 1.19585 1.20953 1.22097 0.93148 0.90950 0.98302 0.92112 1.21641 1.00170 0.97663 0.95055 1.21401 0.94771 0.96230 1.02053 1.22192 0.96914 1.02683 0.96137 1.21736 0.97033 0.87669 0.88357 0.91974 1.86572 1.74544 1.24717 1.53107 1.21618 0.96121 0.96572 1.00369 0.90898 0.92739 0.93537 0.94120 0.94871 0.92193 0.91127 0.93239 0.89699 0.99179 1.01630 0.94016 0.91583 0.92159 0.89971 0.91948 0.90649 0.89162 0.76064 0.91021 0.95325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.06 71.98 0.65 -3.47 16 2 C -0.13 -5.27 2.39 -10.79 -0.03 -5.30 16 3 C -0.13 -4.59 7.68 71.98 0.55 -4.04 16 4 C 0.08 3.08 4.38 86.30 0.38 3.46 16 5 N -0.54 -23.96 4.62 -875.49 -4.05 -28.01 16 6 C 0.20 10.90 3.22 85.55 0.28 11.18 16 7 C -0.59 -34.48 8.05 25.60 0.21 -34.28 16 8 H 0.05 2.90 6.89 -2.91 -0.02 2.88 16 9 C -0.04 -2.30 5.46 84.65 0.46 -1.84 16 10 N -0.94 -60.29 13.65 21.45 0.29 -60.00 16 11 Si 1.12 52.48 29.90 68.60 2.05 54.53 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 15 C 0.06 2.30 1.17 44.92 0.05 2.35 16 16 H 0.06 2.39 3.31 -2.39 -0.01 2.38 16 17 C -0.11 -3.03 4.52 30.59 0.14 -2.89 16 18 C -0.11 -2.26 5.78 30.59 0.18 -2.08 16 19 C -0.14 -2.76 5.64 30.59 0.17 -2.58 16 20 C 0.11 2.90 3.77 30.59 0.12 3.02 16 21 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 22 O -0.58 -15.64 11.97 -148.98 -1.78 -17.43 16 23 C -0.11 -3.95 4.67 30.60 0.14 -3.80 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 26 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.04 2.04 5.58 -2.39 -0.01 2.03 16 28 H 0.03 1.32 5.82 -2.39 -0.01 1.30 16 29 H 0.06 1.81 7.88 -2.39 -0.02 1.79 16 30 H 0.07 2.12 5.87 -2.38 -0.01 2.10 16 31 H 0.05 2.17 6.99 -2.38 -0.02 2.16 16 32 H 0.08 2.84 5.35 -2.39 -0.01 2.83 16 33 H -0.01 -0.58 6.09 -2.38 -0.01 -0.59 16 34 H -0.03 -2.00 5.33 -2.38 -0.01 -2.01 16 35 H 0.25 16.49 7.19 -92.71 -0.67 15.82 16 36 H 0.07 1.79 5.19 -2.39 -0.01 1.77 16 37 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.38 7.68 -2.38 -0.02 1.37 16 40 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.39 6.27 9.08 -74.05 -0.67 5.60 16 43 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.03 1.25 6.30 -2.39 -0.02 1.23 16 Total: -1.00 -71.10 315.05 0.23 -70.87 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.42 Total: 20.33 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.30 Total: -40.29 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -3.76 Total: -88.01 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.78 Total: -17.43 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 2.05 Total: 54.53 kcal Total: -71.10 0.23 -70.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712814022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.807 kcal (2) G-P(sol) polarization free energy of solvation -71.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds