Wall clock time and date at job start Mon Mar 30 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99981 * 2 1 4 4 C 1.53000 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46929 * 60.00126 * 4 3 2 6 6 C 1.53003 * 109.47481 * 300.00242 * 4 3 2 7 7 C 1.52997 * 109.47306 * 180.02562 * 4 3 2 8 8 C 1.53001 * 109.47096 * 180.02562 * 7 4 3 9 9 N 1.46906 * 109.46923 * 179.97438 * 8 7 4 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 1.08998 * 109.47499 * 60.00243 * 1 2 3 23 23 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47189 * 299.99679 * 1 2 3 25 25 H 1.09005 * 109.46836 * 60.00391 * 3 2 1 26 26 H 1.08997 * 109.47365 * 300.00184 * 3 2 1 27 27 H 1.09000 * 109.47157 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.47320 * 299.99808 * 5 4 3 29 29 H 1.09001 * 109.47299 * 59.99953 * 5 4 3 30 30 H 1.08998 * 109.46950 * 300.00245 * 6 4 3 31 31 H 1.09007 * 109.46851 * 59.99404 * 6 4 3 32 32 H 1.08995 * 109.47615 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.46841 * 59.99929 * 7 4 3 34 34 H 1.09001 * 109.46884 * 300.00024 * 7 4 3 35 35 H 1.08996 * 109.47149 * 60.00332 * 8 7 4 36 36 H 1.09001 * 109.47006 * 299.99622 * 8 7 4 37 37 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 38 38 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 39 39 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 40 40 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 41 41 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 42 42 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 43 43 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 44 44 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9865 0.4257 1.2502 7 6 4.1577 2.5824 0.0013 8 6 5.6829 2.4616 0.0013 9 7 6.2804 3.8037 0.0013 10 6 7.7473 3.7268 0.0007 11 6 8.3318 5.1343 0.1360 12 6 8.0586 6.0652 -1.0173 13 1 7.2209 6.7454 -0.9755 14 6 8.8816 6.0523 -2.1235 15 7 9.9558 5.2935 -2.1352 16 14 8.4708 7.1125 -3.6056 17 1 7.2196 7.8677 -3.3425 18 1 9.5812 8.0665 -3.8548 19 1 8.2855 6.2464 -4.7976 20 6 8.3880 5.7442 1.5380 21 6 9.6750 5.2754 0.8547 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 5.0740 0.3396 -1.2481 28 1 3.5441 -0.5705 -1.2484 29 1 3.6661 0.9660 -2.1385 30 1 3.6644 0.9667 2.1399 31 1 3.5431 -0.5701 1.2502 32 1 5.0730 0.3392 1.2504 33 1 3.8356 3.1231 0.8913 34 1 3.8364 3.1236 -0.8887 35 1 6.0046 1.9212 -0.8889 36 1 6.0045 1.9204 0.8911 37 1 5.9468 4.3480 -0.7801 38 1 8.0874 3.2805 -0.9337 39 1 8.0793 3.1135 0.8384 40 1 10.5732 5.3384 -2.8819 41 1 8.2274 6.8187 1.6262 42 1 8.0089 5.1426 2.3641 43 1 10.1422 4.3656 1.2317 44 1 10.3614 6.0412 0.4932 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718716725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:29 Heat of formation + Delta-G solvation = -43.042613 kcal Electronic energy + Delta-G solvation = -19442.552208 eV Core-core repulsion = 16588.041296 eV Total energy + Delta-G solvation = -2854.510912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.96227 -37.13027 -36.29867 -33.71639 -31.85725 -28.72713 -27.44250 -27.20849 -25.96829 -25.45186 -23.90679 -21.69963 -20.82827 -19.13254 -18.52614 -16.48715 -15.96593 -15.84719 -15.67106 -15.12670 -14.59017 -14.17929 -14.06467 -13.77280 -13.40599 -13.12677 -12.79246 -12.40142 -12.18900 -11.93548 -11.69260 -11.58745 -11.36938 -11.17710 -11.01808 -10.94244 -10.82848 -10.55556 -10.40123 -10.34742 -10.26036 -10.03258 -9.78234 -9.26864 -8.79642 -8.35787 -8.00180 -7.43485 -5.98554 -4.05776 3.28022 3.37025 3.40871 3.61678 4.41939 4.78179 4.78659 4.83413 5.12085 5.12864 5.16422 5.29173 5.37957 5.41178 5.43330 5.55767 5.62086 5.64962 5.80810 5.87665 5.93463 6.03287 6.04203 6.17651 6.25426 6.27076 6.30886 6.51821 6.52809 6.56993 6.63667 6.89032 6.91223 6.97724 7.02648 7.25426 7.56084 7.66079 7.91699 8.05382 8.32985 8.54454 8.98255 9.59818 11.08622 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004195 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.072975 B = 6673.174172 C = 7259.232085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.071 3.929 4 C -0.060 4.060 5 C -0.140 4.140 6 C -0.138 4.138 7 C -0.105 4.105 8 C 0.058 3.942 9 N -0.683 5.683 10 C 0.107 3.893 11 C 0.047 3.953 12 C -0.491 4.491 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.880 5.880 16 Si 0.886 3.114 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.201 4.201 21 C -0.157 4.157 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.345 0.655 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.258 0.742 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 -9.458 3.610 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.005 4.005 4 C -0.060 4.060 5 C -0.197 4.197 6 C -0.195 4.195 7 C -0.143 4.143 8 C -0.072 4.072 9 N -0.314 5.314 10 C -0.022 4.022 11 C 0.046 3.954 12 C -0.529 4.529 13 H 0.078 0.922 14 C -0.134 4.134 15 N -0.517 5.517 16 Si 0.714 3.286 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.238 4.238 21 C -0.195 4.195 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.164 0.836 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.135 -9.654 4.143 17.611 hybrid contribution -0.102 0.561 -1.793 1.882 sum -14.236 -9.093 2.350 17.055 Atomic orbital electron populations 1.22704 0.81582 1.02425 0.99813 1.87868 1.19093 1.28259 1.95361 1.22625 0.93675 0.84210 1.00001 1.20549 0.92246 0.96367 0.96862 1.21859 1.01400 1.00192 0.96271 1.21838 1.01306 1.00131 0.96253 1.21546 0.95778 0.94480 1.02523 1.21996 0.93172 0.92104 0.99920 1.60440 1.08118 1.12352 1.50465 1.21422 0.85571 0.97335 0.97873 1.18752 0.94955 0.92116 0.89581 1.20519 1.12930 1.19939 0.99466 0.92186 1.25017 0.95156 0.95142 0.98133 1.70023 1.11569 1.38760 1.31379 0.86630 0.78522 0.80312 0.83118 1.19666 1.21125 1.21126 1.22863 1.04021 0.99206 0.97754 1.22497 0.91542 1.00763 1.04673 0.94294 0.89902 0.94275 0.93329 0.93396 0.92185 0.92241 0.93044 0.92922 0.92296 0.92238 0.91118 0.92060 0.95806 0.91659 0.83648 0.95269 0.94413 0.93230 0.90994 0.91812 0.92403 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.36 9.35 -35.23 -0.33 -4.69 16 3 C 0.07 0.78 4.81 37.16 0.18 0.96 16 4 C -0.06 -0.70 0.63 -154.51 -0.10 -0.80 16 5 C -0.14 -1.68 7.98 37.16 0.30 -1.39 16 6 C -0.14 -1.60 7.97 37.16 0.30 -1.31 16 7 C -0.11 -1.40 4.53 -26.73 -0.12 -1.52 16 8 C 0.06 0.92 4.97 -3.82 -0.02 0.90 16 9 N -0.68 -13.39 6.47 -113.78 -0.74 -14.13 16 10 C 0.11 2.41 5.54 -3.83 -0.02 2.39 16 11 C 0.05 1.16 1.65 -155.66 -0.26 0.90 16 12 C -0.49 -13.22 8.33 -34.43 -0.29 -13.50 16 13 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 14 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 15 N -0.88 -24.90 12.65 55.43 0.70 -24.20 16 16 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.20 -4.59 9.96 -26.70 -0.27 -4.86 16 21 C -0.16 -3.81 9.14 -26.70 -0.24 -4.05 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 28 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.68 7.68 -51.92 -0.40 0.28 16 32 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 36 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 37 H 0.35 7.05 8.30 -39.29 -0.33 6.72 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -28.16 348.87 -8.00 -36.16 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.34 Total: 4.83 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 0.47 Total: -19.16 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.04 Total: -38.33 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.33 Total: -4.69 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.16 -8.00 -36.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718716725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.884 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds