Wall clock time and date at job start Mon Mar 30 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99981 * 2 1 4 4 C 1.53000 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46929 * 60.00126 * 4 3 2 6 6 C 1.53003 * 109.47481 * 300.00242 * 4 3 2 7 7 C 1.52997 * 109.47306 * 180.02562 * 4 3 2 8 8 C 1.53001 * 109.47096 * 180.02562 * 7 4 3 9 9 N 1.46906 * 109.46923 * 179.97438 * 8 7 4 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 1.08998 * 109.47499 * 60.00243 * 1 2 3 23 23 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47189 * 299.99679 * 1 2 3 25 25 H 1.09005 * 109.46836 * 60.00391 * 3 2 1 26 26 H 1.08997 * 109.47365 * 300.00184 * 3 2 1 27 27 H 1.09000 * 109.47157 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.47320 * 299.99808 * 5 4 3 29 29 H 1.09001 * 109.47299 * 59.99953 * 5 4 3 30 30 H 1.08998 * 109.46950 * 300.00245 * 6 4 3 31 31 H 1.09007 * 109.46851 * 59.99404 * 6 4 3 32 32 H 1.08995 * 109.47615 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.46841 * 59.99929 * 7 4 3 34 34 H 1.09001 * 109.46884 * 300.00024 * 7 4 3 35 35 H 1.08996 * 109.47149 * 60.00332 * 8 7 4 36 36 H 1.09001 * 109.47006 * 299.99622 * 8 7 4 37 37 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 38 38 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 39 39 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 40 40 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 41 41 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 42 42 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 43 43 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 44 44 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9865 0.4257 1.2502 7 6 4.1577 2.5824 0.0013 8 6 5.6829 2.4616 0.0013 9 7 6.2804 3.8037 0.0013 10 6 7.7473 3.7268 0.0007 11 6 8.3318 5.1343 0.1360 12 6 8.0586 6.0652 -1.0173 13 1 7.2209 6.7454 -0.9755 14 6 8.8816 6.0523 -2.1235 15 7 9.9558 5.2935 -2.1352 16 14 8.4708 7.1125 -3.6056 17 1 7.2196 7.8677 -3.3425 18 1 9.5812 8.0665 -3.8548 19 1 8.2855 6.2464 -4.7976 20 6 8.3880 5.7442 1.5380 21 6 9.6750 5.2754 0.8547 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 5.0740 0.3396 -1.2481 28 1 3.5441 -0.5705 -1.2484 29 1 3.6661 0.9660 -2.1385 30 1 3.6644 0.9667 2.1399 31 1 3.5431 -0.5701 1.2502 32 1 5.0730 0.3392 1.2504 33 1 3.8356 3.1231 0.8913 34 1 3.8364 3.1236 -0.8887 35 1 6.0046 1.9212 -0.8889 36 1 6.0045 1.9204 0.8911 37 1 5.9468 4.3480 -0.7801 38 1 8.0874 3.2805 -0.9337 39 1 8.0793 3.1135 0.8384 40 1 10.5732 5.3384 -2.8819 41 1 8.2274 6.8187 1.6262 42 1 8.0089 5.1426 2.3641 43 1 10.1422 4.3656 1.2317 44 1 10.3614 6.0412 0.4932 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718716725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:28 Heat of formation + Delta-G solvation = -59.216916 kcal Electronic energy + Delta-G solvation = -19443.253579 eV Core-core repulsion = 16588.041296 eV Total energy + Delta-G solvation = -2855.212283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90501 -38.73855 -37.49735 -35.17571 -33.92251 -30.01033 -28.25581 -28.15513 -27.61895 -26.70197 -25.42736 -23.07125 -22.65135 -20.98169 -19.61442 -17.90021 -17.24633 -16.86242 -16.71740 -16.62086 -16.29987 -15.73148 -15.29685 -15.17187 -14.57844 -14.28548 -14.13447 -13.87681 -13.54418 -13.18008 -12.95197 -12.86147 -12.80873 -12.70994 -12.59255 -12.28903 -12.25322 -12.04862 -11.95427 -11.58471 -11.47108 -11.29542 -11.12471 -10.79916 -10.54535 -10.35709 -9.90119 -9.07508 -8.06135 -6.18684 1.40285 1.43920 1.54322 2.44199 2.81510 3.21030 3.38921 3.78760 3.85732 3.86647 4.12932 4.25859 4.39621 4.45525 4.51880 4.53713 4.55688 4.67302 4.69683 4.72358 4.74790 4.78323 4.87728 4.90596 4.97762 4.99921 5.07670 5.08337 5.10383 5.15956 5.26403 5.28553 5.32671 5.51400 5.51853 5.67360 5.72687 5.83477 6.28350 6.39005 6.50283 6.68659 6.91412 7.49622 9.00678 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004195 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.072975 B = 6673.174172 C = 7259.232085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.074 3.926 4 C -0.056 4.056 5 C -0.137 4.137 6 C -0.135 4.135 7 C -0.095 4.095 8 C 0.060 3.940 9 N -0.681 5.681 10 C 0.121 3.879 11 C 0.023 3.977 12 C -0.501 4.501 13 H 0.053 0.947 14 C 0.023 3.977 15 N -0.909 5.909 16 Si 0.948 3.052 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.283 1.283 20 C -0.179 4.179 21 C -0.163 4.163 22 H 0.045 0.955 23 H 0.095 0.905 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.339 0.661 38 H -0.002 1.002 39 H 0.046 0.954 40 H 0.257 0.743 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.994 -9.606 3.939 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.003 4.003 4 C -0.057 4.057 5 C -0.194 4.194 6 C -0.192 4.192 7 C -0.133 4.133 8 C -0.069 4.069 9 N -0.311 5.311 10 C -0.009 4.009 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.071 0.929 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.774 3.226 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.216 4.216 21 C -0.201 4.201 22 H 0.064 0.936 23 H 0.114 0.886 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.016 0.984 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.815 -9.804 4.483 19.140 hybrid contribution 0.386 0.579 -1.859 1.985 sum -15.429 -9.226 2.624 18.168 Atomic orbital electron populations 1.22888 0.79995 1.03594 1.00587 1.87831 1.20863 1.28310 1.95513 1.22555 0.92717 0.84422 1.00592 1.20487 0.93202 0.95216 0.96810 1.21822 1.00757 1.00363 0.96476 1.21800 1.00870 1.00225 0.96296 1.21436 0.93656 0.95588 1.02657 1.22061 0.94852 0.90125 0.99882 1.60438 1.06319 1.14333 1.50023 1.21158 0.87298 0.95824 0.96585 1.18923 0.95534 0.93143 0.90126 1.20739 1.12575 1.20091 1.00461 0.92855 1.25685 0.95037 0.96422 1.00556 1.70131 1.12414 1.40124 1.32105 0.85661 0.78357 0.78721 0.79839 1.18943 1.21076 1.20955 1.22837 1.02159 0.99367 0.97211 1.22401 0.91529 1.00687 1.05513 0.93608 0.88636 0.93388 0.92568 0.92992 0.93088 0.92077 0.93052 0.92453 0.92209 0.92833 0.90866 0.92013 0.96293 0.91197 0.84305 0.98361 0.93514 0.93347 0.91083 0.89690 0.91353 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.35 9.35 -148.98 -1.39 -9.75 16 3 C 0.07 1.46 4.81 71.98 0.35 1.80 16 4 C -0.06 -1.25 0.63 -52.18 -0.03 -1.28 16 5 C -0.14 -3.14 7.98 71.98 0.57 -2.57 16 6 C -0.13 -2.91 7.97 71.98 0.57 -2.34 16 7 C -0.10 -2.39 4.53 30.59 0.14 -2.25 16 8 C 0.06 1.85 4.97 86.30 0.43 2.28 16 9 N -0.68 -26.17 6.47 -513.89 -3.33 -29.49 16 10 C 0.12 5.43 5.54 86.30 0.48 5.91 16 11 C 0.02 1.15 1.65 -52.93 -0.09 1.07 16 12 C -0.50 -26.99 8.33 25.60 0.21 -26.77 16 13 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 14 C 0.02 1.24 5.43 84.65 0.46 1.70 16 15 N -0.91 -52.04 12.65 21.45 0.27 -51.77 16 16 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 C -0.18 -7.92 9.96 30.62 0.30 -7.61 16 21 C -0.16 -7.91 9.14 30.62 0.28 -7.63 16 22 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.24 6.43 -2.39 -0.02 1.23 16 28 H 0.06 1.37 7.68 -2.39 -0.02 1.36 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.28 7.68 -2.38 -0.02 1.26 16 32 H 0.05 1.20 6.43 -2.39 -0.02 1.19 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.02 0.61 6.43 -2.39 -0.02 0.60 16 36 H 0.07 2.11 6.43 -2.39 -0.02 2.09 16 37 H 0.34 13.71 8.30 -89.69 -0.74 12.96 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 40 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -58.68 348.87 2.70 -55.99 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.19 Total: 25.99 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 4.93 Total: -36.10 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -3.05 Total: -81.26 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.39 Total: -9.75 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -58.68 2.70 -55.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718716725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.230 kcal (2) G-P(sol) polarization free energy of solvation -58.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds