Wall clock time and date at job start Mon Mar 30 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00148 * 2 1 4 4 C 1.52998 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46744 * 52.66730 * 4 3 2 6 6 C 1.53002 * 109.47004 * 172.66916 * 4 3 2 7 7 N 1.46900 * 109.46586 * 185.79584 * 6 4 3 8 8 C 1.46909 * 110.99609 * 200.26649 * 7 6 4 9 9 C 1.50698 * 109.46866 * 160.72414 * 8 7 6 10 10 H 1.07997 * 120.00481 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99789 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99964 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99779 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47393 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47078 * 120.00474 * 13 11 9 16 16 H 1.48505 * 109.46908 * 240.00392 * 13 11 9 17 17 C 1.46901 * 111.00223 * 76.31633 * 7 6 4 18 18 C 1.53003 * 117.49728 * 266.68059 * 17 7 6 19 19 C 1.52998 * 117.49832 * 198.02069 * 17 7 6 20 20 C 1.52997 * 109.47196 * 292.67071 * 4 3 2 21 21 C 1.53007 * 109.46968 * 308.51207 * 20 4 3 22 22 C 1.53001 * 109.47265 * 68.50963 * 20 4 3 23 23 H 1.09004 * 109.47315 * 59.99698 * 1 2 3 24 24 H 1.09000 * 109.47433 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47272 * 300.00111 * 1 2 3 26 26 H 1.09004 * 109.47362 * 59.99788 * 3 2 1 27 27 H 1.08997 * 109.46692 * 300.00277 * 3 2 1 28 28 H 1.08994 * 109.46946 * 305.79152 * 6 4 3 29 29 H 1.08999 * 109.47004 * 65.79710 * 6 4 3 30 30 H 1.08997 * 109.47030 * 280.72873 * 8 7 6 31 31 H 1.09001 * 109.46608 * 40.72984 * 8 7 6 32 32 H 0.96993 * 119.99824 * 179.97438 * 12 11 9 33 33 H 1.08996 * 115.55062 * 52.35010 * 17 7 6 34 34 H 1.08998 * 117.49818 * 0.02562 * 18 17 7 35 35 H 1.08998 * 117.49921 * 145.02006 * 18 17 7 36 36 H 1.09000 * 117.50469 * 214.97645 * 19 17 7 37 37 H 1.09004 * 117.49897 * 359.97438 * 19 17 7 38 38 H 1.08994 * 109.47128 * 188.51322 * 20 4 3 39 39 H 1.09001 * 109.47066 * 178.85045 * 21 20 4 40 40 H 1.08999 * 109.47008 * 58.85138 * 21 20 4 41 41 H 1.08990 * 109.47016 * 298.84949 * 21 20 4 42 42 H 1.09005 * 109.46821 * 50.34826 * 22 20 4 43 43 H 1.08995 * 109.46960 * 170.34083 * 22 20 4 44 44 H 1.08997 * 109.47302 * 290.34728 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8487 0.5345 -0.8163 6 6 4.1569 2.5706 -0.1834 7 7 5.6134 2.4396 -0.3218 8 6 6.2871 3.7102 -0.0219 9 6 7.7376 3.4479 0.2916 10 1 8.1206 2.4383 0.2707 11 6 8.5757 4.4968 0.6053 12 7 8.1092 5.7262 0.6314 13 14 10.3738 4.1718 0.9932 14 1 10.6459 2.7151 0.8955 15 1 11.2293 4.9008 0.0226 16 1 10.6760 4.6410 2.3694 17 6 5.9737 1.9562 -1.6614 18 6 6.1499 0.4474 -1.8442 19 6 7.3735 1.3672 -1.8471 20 6 3.9994 0.5904 1.3320 21 6 3.3827 1.3826 2.4866 22 6 3.5544 -0.8708 1.4210 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.7472 3.0363 -1.0797 29 1 3.9285 3.1893 0.6844 30 1 6.2158 4.3718 -0.8851 31 1 5.8091 4.1808 0.8372 32 1 8.6987 6.4640 0.8524 33 1 5.5495 2.5178 -2.4937 34 1 5.9981 -0.1865 -0.9706 35 1 5.8420 0.0165 -2.7969 36 1 7.8701 1.5410 -2.8017 37 1 8.0273 1.3388 -0.9754 38 1 5.0863 0.6437 1.3945 39 1 3.6968 0.9467 3.4350 40 1 2.2958 1.3463 2.4124 41 1 3.7160 2.4190 2.4350 42 1 3.8489 -1.3962 0.5124 43 1 4.0266 -1.3425 2.2826 44 1 2.4709 -0.9146 1.5311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721733592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:34 Heat of formation + Delta-G solvation = -25.585260 kcal Electronic energy + Delta-G solvation = -20444.585121 eV Core-core repulsion = 17590.831216 eV Total energy + Delta-G solvation = -2853.753905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.96201 -37.45059 -35.57905 -33.43344 -32.22871 -29.91534 -27.46043 -26.83243 -26.09487 -24.09659 -22.23680 -22.09668 -21.55611 -19.64159 -18.47949 -16.61074 -16.36311 -16.03596 -15.04839 -14.83193 -14.69752 -14.45782 -13.92154 -13.58364 -13.33017 -13.13920 -12.38396 -12.22267 -12.02597 -11.63621 -11.63055 -11.53248 -11.40800 -11.22331 -10.98793 -10.83283 -10.80077 -10.57399 -10.14484 -10.09383 -9.91039 -9.76494 -9.44553 -9.37729 -9.07330 -9.05514 -8.36700 -7.24014 -5.97621 -3.96969 3.33327 3.41033 3.45206 3.82652 4.46099 4.61766 4.85117 5.09778 5.18958 5.29107 5.36294 5.37881 5.40693 5.58021 5.62191 5.64820 5.69496 5.73905 5.78196 5.89947 5.96592 6.06857 6.11750 6.23794 6.25188 6.32997 6.36262 6.41697 6.48555 6.61036 6.67452 6.74231 6.86382 7.00482 7.06143 7.24246 7.29901 7.40742 7.91145 8.15733 8.26827 8.59716 9.10337 9.66081 11.13366 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.005490 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.403235 B = 5098.624484 C = 5330.243351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.380 6.380 3 C 0.061 3.939 4 C -0.074 4.074 5 H 0.081 0.919 6 C 0.064 3.936 7 N -0.504 5.504 8 C 0.197 3.803 9 C -0.495 4.495 10 H 0.069 0.931 11 C 0.053 3.947 12 N -0.902 5.902 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.028 3.972 18 C -0.185 4.185 19 C -0.155 4.155 20 C -0.081 4.081 21 C -0.147 4.147 22 C -0.141 4.141 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.070 0.930 30 H -0.009 1.009 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.199 -9.856 -1.485 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C -0.016 4.016 4 C -0.093 4.093 5 H 0.099 0.901 6 C -0.064 4.064 7 N -0.228 5.228 8 C 0.072 3.928 9 C -0.534 4.534 10 H 0.087 0.913 11 C -0.148 4.148 12 N -0.542 5.542 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.082 4.082 18 C -0.223 4.223 19 C -0.192 4.192 20 C -0.099 4.099 21 C -0.204 4.204 22 C -0.198 4.198 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.009 0.991 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.862 -10.168 -1.100 15.662 hybrid contribution 0.436 0.987 -0.437 1.164 sum -11.426 -9.180 -1.537 14.738 Atomic orbital electron populations 1.22689 0.82337 1.02169 0.99596 1.87978 1.18504 1.28244 1.95127 1.22743 0.94838 0.84297 0.99740 1.21199 0.90847 0.98000 0.99244 0.90089 1.21994 0.89868 0.94852 0.99723 1.61798 1.04538 1.33185 1.23290 1.19725 0.94187 0.83669 0.95203 1.21314 0.93361 0.93626 1.45062 0.91281 1.24980 0.98679 0.95092 0.96028 1.69965 1.35529 0.98743 1.50003 0.86515 0.85210 0.78344 0.77794 1.19648 1.21266 1.21185 1.22081 1.00813 0.94038 0.91248 1.23041 1.04333 0.93386 1.01501 1.23049 0.91266 1.02063 1.02817 1.20951 1.01763 0.94052 0.93146 1.21933 0.99685 1.00711 0.98111 1.21894 1.01761 0.95977 1.00161 0.94546 0.90101 0.94462 0.92840 0.94140 0.96031 0.91144 0.99077 0.95469 0.93161 0.91603 0.88799 0.90365 0.90226 0.86912 0.89332 0.93399 0.93459 0.92408 0.93438 0.94312 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.91 7.73 -35.23 -0.27 -5.18 16 3 C 0.06 0.80 4.94 37.16 0.18 0.98 16 4 C -0.07 -1.12 1.98 -90.62 -0.18 -1.30 16 5 H 0.08 1.31 6.19 -51.93 -0.32 0.99 16 6 C 0.06 1.14 4.31 -3.82 -0.02 1.12 16 7 N -0.50 -10.48 3.85 -228.08 -0.88 -11.35 16 8 C 0.20 5.01 4.76 -4.97 -0.02 4.99 16 9 C -0.50 -13.51 8.24 -34.44 -0.28 -13.79 16 10 H 0.07 1.86 5.36 -52.49 -0.28 1.58 16 11 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 12 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.03 0.53 4.47 -67.71 -0.30 0.23 16 18 C -0.18 -3.06 9.05 -26.69 -0.24 -3.31 16 19 C -0.15 -2.93 9.45 -26.69 -0.25 -3.18 16 20 C -0.08 -1.24 2.64 -90.62 -0.24 -1.48 16 21 C -0.15 -2.12 8.43 37.16 0.31 -1.81 16 22 C -0.14 -1.96 8.37 37.16 0.31 -1.65 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.68 5.85 -51.93 -0.30 0.37 16 27 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.02 0.38 7.97 -51.93 -0.41 -0.04 16 29 H 0.07 1.27 5.94 -51.93 -0.31 0.96 16 30 H -0.01 -0.24 8.01 -51.93 -0.42 -0.66 16 31 H 0.03 0.74 7.60 -51.93 -0.39 0.35 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 34 H 0.09 1.58 7.99 -51.93 -0.42 1.17 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.11 2.39 5.66 -51.93 -0.29 2.09 16 38 H 0.09 1.60 7.56 -51.93 -0.39 1.21 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.61 6.08 -51.93 -0.32 0.30 16 41 H 0.06 0.90 6.62 -51.93 -0.34 0.56 16 42 H 0.05 0.67 8.05 -51.93 -0.42 0.25 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.88 6.05 -51.93 -0.31 0.57 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -28.72 335.32 -7.97 -36.69 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.87 Total: 0.60 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 0.28 Total: -16.43 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.14 Total: -37.29 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.27 Total: -5.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.72 -7.97 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721733592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.107 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds