Wall clock time and date at job start Mon Mar 30 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00148 * 2 1 4 4 C 1.52998 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46744 * 52.66730 * 4 3 2 6 6 C 1.53002 * 109.47004 * 172.66916 * 4 3 2 7 7 N 1.46900 * 109.46586 * 185.79584 * 6 4 3 8 8 C 1.46909 * 110.99609 * 200.26649 * 7 6 4 9 9 C 1.50698 * 109.46866 * 160.72414 * 8 7 6 10 10 H 1.07997 * 120.00481 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99789 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99964 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99779 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47393 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47078 * 120.00474 * 13 11 9 16 16 H 1.48505 * 109.46908 * 240.00392 * 13 11 9 17 17 C 1.46901 * 111.00223 * 76.31633 * 7 6 4 18 18 C 1.53003 * 117.49728 * 266.68059 * 17 7 6 19 19 C 1.52998 * 117.49832 * 198.02069 * 17 7 6 20 20 C 1.52997 * 109.47196 * 292.67071 * 4 3 2 21 21 C 1.53007 * 109.46968 * 308.51207 * 20 4 3 22 22 C 1.53001 * 109.47265 * 68.50963 * 20 4 3 23 23 H 1.09004 * 109.47315 * 59.99698 * 1 2 3 24 24 H 1.09000 * 109.47433 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47272 * 300.00111 * 1 2 3 26 26 H 1.09004 * 109.47362 * 59.99788 * 3 2 1 27 27 H 1.08997 * 109.46692 * 300.00277 * 3 2 1 28 28 H 1.08994 * 109.46946 * 305.79152 * 6 4 3 29 29 H 1.08999 * 109.47004 * 65.79710 * 6 4 3 30 30 H 1.08997 * 109.47030 * 280.72873 * 8 7 6 31 31 H 1.09001 * 109.46608 * 40.72984 * 8 7 6 32 32 H 0.96993 * 119.99824 * 179.97438 * 12 11 9 33 33 H 1.08996 * 115.55062 * 52.35010 * 17 7 6 34 34 H 1.08998 * 117.49818 * 0.02562 * 18 17 7 35 35 H 1.08998 * 117.49921 * 145.02006 * 18 17 7 36 36 H 1.09000 * 117.50469 * 214.97645 * 19 17 7 37 37 H 1.09004 * 117.49897 * 359.97438 * 19 17 7 38 38 H 1.08994 * 109.47128 * 188.51322 * 20 4 3 39 39 H 1.09001 * 109.47066 * 178.85045 * 21 20 4 40 40 H 1.08999 * 109.47008 * 58.85138 * 21 20 4 41 41 H 1.08990 * 109.47016 * 298.84949 * 21 20 4 42 42 H 1.09005 * 109.46821 * 50.34826 * 22 20 4 43 43 H 1.08995 * 109.46960 * 170.34083 * 22 20 4 44 44 H 1.08997 * 109.47302 * 290.34728 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8487 0.5345 -0.8163 6 6 4.1569 2.5706 -0.1834 7 7 5.6134 2.4396 -0.3218 8 6 6.2871 3.7102 -0.0219 9 6 7.7376 3.4479 0.2916 10 1 8.1206 2.4383 0.2707 11 6 8.5757 4.4968 0.6053 12 7 8.1092 5.7262 0.6314 13 14 10.3738 4.1718 0.9932 14 1 10.6459 2.7151 0.8955 15 1 11.2293 4.9008 0.0226 16 1 10.6760 4.6410 2.3694 17 6 5.9737 1.9562 -1.6614 18 6 6.1499 0.4474 -1.8442 19 6 7.3735 1.3672 -1.8471 20 6 3.9994 0.5904 1.3320 21 6 3.3827 1.3826 2.4866 22 6 3.5544 -0.8708 1.4210 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.7472 3.0363 -1.0797 29 1 3.9285 3.1893 0.6844 30 1 6.2158 4.3718 -0.8851 31 1 5.8091 4.1808 0.8372 32 1 8.6987 6.4640 0.8524 33 1 5.5495 2.5178 -2.4937 34 1 5.9981 -0.1865 -0.9706 35 1 5.8420 0.0165 -2.7969 36 1 7.8701 1.5410 -2.8017 37 1 8.0273 1.3388 -0.9754 38 1 5.0863 0.6437 1.3945 39 1 3.6968 0.9467 3.4350 40 1 2.2958 1.3463 2.4124 41 1 3.7160 2.4190 2.4350 42 1 3.8489 -1.3962 0.5124 43 1 4.0266 -1.3425 2.2826 44 1 2.4709 -0.9146 1.5311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721733592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:34 Heat of formation + Delta-G solvation = -41.858657 kcal Electronic energy + Delta-G solvation = -20445.290789 eV Core-core repulsion = 17590.831216 eV Total energy + Delta-G solvation = -2854.459572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23939 -38.77007 -36.76668 -35.26886 -34.06744 -31.29219 -29.00634 -28.02470 -27.30861 -25.39403 -24.07874 -23.48091 -23.00429 -21.22497 -19.78331 -18.50755 -17.43789 -17.20099 -16.67127 -16.30391 -16.16942 -15.95887 -15.06713 -14.95632 -14.71709 -14.55224 -14.13236 -13.73239 -13.33441 -13.18721 -13.04951 -12.82185 -12.68169 -12.62719 -12.44997 -12.41841 -12.30966 -12.09240 -11.78357 -11.46208 -11.33336 -11.09395 -10.98250 -10.88308 -10.65134 -10.51327 -10.36093 -8.96893 -8.13761 -6.20617 1.41394 1.42583 1.55206 2.42873 2.80164 3.11142 3.18559 3.38162 3.89701 4.08368 4.14441 4.20752 4.29601 4.44571 4.47591 4.51475 4.53685 4.60656 4.65961 4.68970 4.73685 4.79693 4.90227 4.92065 4.93559 4.96808 5.09483 5.14244 5.20454 5.22047 5.26850 5.38076 5.39648 5.47326 5.51329 5.65975 5.81215 5.83237 6.14207 6.34595 6.47269 6.70378 6.95699 7.47480 8.97442 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.005490 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.403235 B = 5098.624484 C = 5330.243351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.067 3.933 4 C -0.063 4.063 5 H 0.076 0.924 6 C 0.065 3.935 7 N -0.505 5.505 8 C 0.213 3.787 9 C -0.502 4.502 10 H 0.072 0.928 11 C -0.001 4.001 12 N -0.940 5.940 13 Si 0.961 3.039 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.003 3.997 18 C -0.145 4.145 19 C -0.167 4.167 20 C -0.079 4.079 21 C -0.143 4.143 22 C -0.131 4.131 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.060 0.940 30 H -0.041 1.041 31 H 0.000 1.000 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 -11.844 -1.799 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C -0.009 4.009 4 C -0.082 4.082 5 H 0.094 0.906 6 C -0.063 4.063 7 N -0.228 5.228 8 C 0.087 3.913 9 C -0.540 4.540 10 H 0.090 0.910 11 C -0.198 4.198 12 N -0.581 5.581 13 Si 0.786 3.214 14 H -0.186 1.186 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.106 4.106 18 C -0.182 4.182 19 C -0.204 4.204 20 C -0.098 4.098 21 C -0.200 4.200 22 C -0.188 4.188 23 H 0.062 0.938 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.079 0.921 30 H -0.023 1.023 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.576 -12.183 -1.419 17.567 hybrid contribution 0.572 1.589 -0.358 1.727 sum -12.005 -10.594 -1.778 16.109 Atomic orbital electron populations 1.22898 0.80420 1.03582 1.00443 1.87930 1.20517 1.27624 1.95275 1.22562 0.93094 0.84897 1.00385 1.21026 0.92497 0.95715 0.98941 0.90590 1.22035 0.88165 0.96762 0.99360 1.61733 1.06193 1.30230 1.24690 1.19359 0.94086 0.85145 0.92703 1.21623 0.94264 0.93744 1.44387 0.91025 1.25840 1.03197 0.94822 0.95929 1.70096 1.37184 0.99703 1.51161 0.85457 0.79753 0.78649 0.77525 1.18576 1.20802 1.20842 1.22202 1.01731 0.96409 0.90288 1.23037 1.01100 0.91180 1.02921 1.23013 0.91230 1.03696 1.02496 1.20885 0.99839 0.95486 0.93574 1.21886 1.00720 0.99336 0.98050 1.21790 1.02176 0.94501 1.00316 0.93757 0.88472 0.93561 0.92262 0.93502 0.95804 0.92122 1.02328 0.98173 0.93068 0.91640 0.88888 0.87188 0.88740 0.89459 0.92522 0.92863 0.91651 0.94364 0.93620 0.93779 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.39 -9.14 7.73 -148.98 -1.15 -10.29 16 3 C 0.07 1.65 4.94 71.98 0.36 2.01 16 4 C -0.06 -1.85 1.98 -10.79 -0.02 -1.87 16 5 H 0.08 2.33 6.19 -2.39 -0.01 2.31 16 6 C 0.07 2.34 4.31 86.30 0.37 2.71 16 7 N -0.50 -21.51 3.85 -875.51 -3.37 -24.88 16 8 C 0.21 11.35 4.76 85.55 0.41 11.75 16 9 C -0.50 -28.10 8.24 25.60 0.21 -27.89 16 10 H 0.07 3.92 5.36 -2.91 -0.02 3.91 16 11 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 12 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 13 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 C 0.00 0.11 4.47 44.92 0.20 0.31 16 18 C -0.14 -4.52 9.05 30.62 0.28 -4.24 16 19 C -0.17 -6.21 9.45 30.62 0.29 -5.92 16 20 C -0.08 -2.37 2.64 -10.79 -0.03 -2.40 16 21 C -0.14 -4.02 8.43 71.98 0.61 -3.41 16 22 C -0.13 -3.39 8.37 71.98 0.60 -2.79 16 23 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.06 1.38 5.85 -2.38 -0.01 1.37 16 27 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.02 0.84 7.97 -2.39 -0.02 0.82 16 29 H 0.06 2.28 5.94 -2.39 -0.01 2.26 16 30 H -0.04 -2.41 8.01 -2.39 -0.02 -2.42 16 31 H 0.00 0.01 7.60 -2.39 -0.02 -0.01 16 32 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 34 H 0.09 2.95 7.99 -2.39 -0.02 2.94 16 35 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.16 16 37 H 0.09 3.71 5.66 -2.39 -0.01 3.70 16 38 H 0.06 2.06 7.56 -2.39 -0.02 2.05 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.58 6.08 -2.39 -0.01 1.57 16 41 H 0.04 1.21 6.62 -2.39 -0.02 1.19 16 42 H 0.04 1.19 8.05 -2.38 -0.02 1.17 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.78 6.05 -2.39 -0.01 1.77 16 Total: -1.00 -62.70 335.32 3.72 -58.98 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.95 Total: 15.92 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.98 Total: -29.72 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -3.08 Total: -81.65 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.15 Total: -10.29 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.70 3.72 -58.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721733592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.123 kcal (2) G-P(sol) polarization free energy of solvation -62.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds