Wall clock time and date at job start Mon Mar 30 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99858 * 2 1 4 4 C 1.52998 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47412 * 302.15083 * 4 3 2 6 6 C 1.53001 * 109.47088 * 182.14718 * 4 3 2 7 7 N 1.46900 * 109.46899 * 62.50308 * 6 4 3 8 8 C 1.46902 * 111.00045 * 196.91647 * 7 6 4 9 9 C 1.50693 * 109.47284 * 162.03510 * 8 7 6 10 10 H 1.08005 * 119.99730 * 354.22432 * 9 8 7 11 11 C 1.37875 * 120.00404 * 174.22678 * 9 8 7 12 12 N 1.31513 * 119.99512 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00384 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47347 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47086 * 120.00116 * 13 11 9 16 16 H 1.48504 * 109.47636 * 240.00053 * 13 11 9 17 17 C 1.46908 * 110.99816 * 72.96413 * 7 6 4 18 18 C 1.52996 * 117.49768 * 263.92901 * 17 7 6 19 19 C 1.52997 * 117.49692 * 195.30633 * 17 7 6 20 20 C 1.53003 * 109.47335 * 62.14984 * 4 3 2 21 21 C 1.53002 * 109.47010 * 64.42060 * 20 4 3 22 22 C 1.52991 * 109.47302 * 184.42720 * 20 4 3 23 23 H 1.09002 * 109.47228 * 59.99658 * 1 2 3 24 24 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46859 * 300.00020 * 1 2 3 26 26 H 1.08999 * 109.46740 * 60.00023 * 3 2 1 27 27 H 1.08993 * 109.47240 * 300.00225 * 3 2 1 28 28 H 1.08998 * 109.46965 * 302.50383 * 6 4 3 29 29 H 1.09004 * 109.47154 * 182.50412 * 6 4 3 30 30 H 1.08997 * 109.46607 * 42.03113 * 8 7 6 31 31 H 1.09001 * 109.47301 * 282.03787 * 8 7 6 32 32 H 0.97007 * 120.00097 * 180.02562 * 12 11 9 33 33 H 1.08995 * 115.54648 * 49.63715 * 17 7 6 34 34 H 1.08997 * 117.50104 * 0.02562 * 18 17 7 35 35 H 1.08995 * 117.49839 * 145.02482 * 18 17 7 36 36 H 1.08998 * 117.50077 * 214.97866 * 19 17 7 37 37 H 1.08997 * 117.49967 * 359.97438 * 19 17 7 38 38 H 1.08999 * 109.46989 * 304.42970 * 20 4 3 39 39 H 1.09000 * 109.46413 * 64.69830 * 21 20 4 40 40 H 1.08998 * 109.46839 * 184.69053 * 21 20 4 41 41 H 1.08993 * 109.47582 * 304.69455 * 21 20 4 42 42 H 1.08994 * 109.47552 * 63.73600 * 22 20 4 43 43 H 1.09001 * 109.47144 * 183.73167 * 22 20 4 44 44 H 1.08998 * 109.47593 * 303.72939 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8541 0.6110 0.8710 6 6 4.1576 2.5814 0.0547 7 7 3.7684 3.2427 1.3074 8 6 3.9950 4.6921 1.2301 9 6 3.2029 5.3827 2.3101 10 1 2.5208 4.8153 2.9261 11 6 3.3488 6.7387 2.5120 12 7 4.1790 7.4296 1.7616 13 14 2.3664 7.5949 3.8503 14 1 1.5103 6.6021 4.5479 15 1 3.2970 8.2176 4.8259 16 1 1.5115 8.6456 3.2416 17 6 4.4786 2.6592 2.4534 18 6 3.7556 1.5750 3.2550 19 6 3.9410 2.9718 3.8513 20 6 3.9912 0.4724 -1.2745 21 6 3.6412 1.3314 -2.4913 22 6 5.5044 0.2531 -1.2230 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8038 3.1698 -0.7919 29 1 5.2435 2.4974 0.0103 30 1 3.6754 5.0582 0.2545 31 1 5.0559 4.9018 1.3670 32 1 4.2820 8.3836 1.9038 33 1 5.5584 2.5651 2.3388 34 1 2.7531 1.2944 2.9319 35 1 4.3597 0.7673 3.6680 36 1 4.6671 3.0829 4.6565 37 1 3.0607 3.6107 3.9206 38 1 3.4869 -0.4907 -1.3526 39 1 4.2098 2.2606 -2.4555 40 1 3.8899 0.7882 -3.4030 41 1 2.5750 1.5572 -2.4822 42 1 5.7472 -0.4129 -0.3952 43 1 5.8387 -0.1942 -2.1592 44 1 6.0056 1.2102 -1.0784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721733593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:37 Heat of formation + Delta-G solvation = -29.242452 kcal Electronic energy + Delta-G solvation = -20470.651009 eV Core-core repulsion = 17616.738516 eV Total energy + Delta-G solvation = -2853.912493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.89621 -37.24304 -35.93249 -33.42130 -32.24124 -29.79655 -27.48549 -26.93576 -25.98379 -24.00537 -22.51755 -22.18904 -21.54538 -19.60784 -18.46430 -16.50758 -16.08711 -15.70585 -15.35702 -14.84345 -14.73242 -14.27127 -14.15119 -13.85826 -13.11189 -12.89132 -12.59277 -12.51455 -12.04132 -11.78618 -11.78487 -11.60581 -11.23817 -11.18966 -10.97415 -10.88504 -10.77491 -10.60684 -10.37944 -10.17610 -10.03366 -9.82751 -9.43118 -9.25606 -9.08676 -9.04050 -8.38971 -7.24527 -5.99992 -3.99652 3.30920 3.38795 3.42554 4.06945 4.42184 4.63241 4.79053 5.06802 5.16420 5.22252 5.35421 5.45402 5.48699 5.61465 5.66822 5.70668 5.75169 5.79437 5.81125 5.87160 5.89154 5.99239 6.09136 6.14766 6.16095 6.21406 6.25567 6.28240 6.42286 6.47558 6.56542 6.64889 6.73551 6.77124 7.03381 7.24549 7.41993 7.48839 7.88349 8.13884 8.23701 8.57746 9.07415 9.63284 11.10784 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.006045 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.298597 B = 4630.587934 C = 4863.421999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.071 3.929 4 C -0.071 4.071 5 H 0.078 0.922 6 C 0.062 3.938 7 N -0.511 5.511 8 C 0.195 3.805 9 C -0.496 4.496 10 H 0.068 0.932 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.029 3.971 18 C -0.185 4.185 19 C -0.156 4.156 20 C -0.089 4.089 21 C -0.150 4.150 22 C -0.148 4.148 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.024 0.976 31 H -0.004 1.004 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -13.546 -4.182 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.005 4.005 4 C -0.090 4.090 5 H 0.097 0.903 6 C -0.066 4.066 7 N -0.236 5.236 8 C 0.071 3.929 9 C -0.535 4.535 10 H 0.086 0.914 11 C -0.148 4.148 12 N -0.541 5.541 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.080 4.080 18 C -0.223 4.223 19 C -0.193 4.193 20 C -0.108 4.108 21 C -0.207 4.207 22 C -0.206 4.206 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.188 -13.578 -4.146 14.365 hybrid contribution 0.249 1.076 0.536 1.227 sum -1.939 -12.503 -3.610 13.157 Atomic orbital electron populations 1.22635 0.81960 1.01790 0.99865 1.87800 1.18883 1.29437 1.95494 1.22605 0.93532 0.83244 1.01114 1.21124 0.93246 0.96757 0.97829 0.90335 1.22132 0.97096 0.93747 0.93668 1.61898 1.55355 1.06480 0.99852 1.19716 0.95630 0.80151 0.97450 1.21286 1.23261 0.92354 1.16579 0.91375 1.24979 0.95675 0.97575 0.96525 1.69969 1.36891 1.07578 1.39658 0.86524 0.79934 0.79616 0.81844 1.19675 1.21191 1.21173 1.22040 0.93523 1.01539 0.90922 1.23024 1.01844 0.92158 1.05265 1.23087 1.04229 0.97187 0.94784 1.21068 0.95689 0.99282 0.94718 1.21934 1.01600 1.00006 0.97152 1.21896 0.96048 1.01674 1.00945 0.94586 0.90407 0.94218 0.91377 0.93821 0.91174 0.94954 0.95837 0.98558 0.93124 0.91536 0.89026 0.90374 0.90299 0.86700 0.90795 0.92417 0.93403 0.92614 0.93000 0.93257 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.40 -5.94 10.04 -35.23 -0.35 -6.29 16 3 C 0.07 1.11 5.04 37.16 0.19 1.30 16 4 C -0.07 -1.08 1.84 -90.62 -0.17 -1.24 16 5 H 0.08 1.27 6.56 -51.93 -0.34 0.93 16 6 C 0.06 1.09 3.65 -3.82 -0.01 1.08 16 7 N -0.51 -10.61 3.83 -228.09 -0.87 -11.48 16 8 C 0.20 4.95 4.75 -4.98 -0.02 4.93 16 9 C -0.50 -13.46 7.92 -34.44 -0.27 -13.73 16 10 H 0.07 1.83 5.54 -52.48 -0.29 1.54 16 11 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 12 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.03 0.56 4.40 -67.71 -0.30 0.27 16 18 C -0.19 -3.11 9.19 -26.73 -0.25 -3.35 16 19 C -0.16 -2.98 9.40 -26.73 -0.25 -3.23 16 20 C -0.09 -1.17 2.63 -90.62 -0.24 -1.41 16 21 C -0.15 -1.89 8.41 37.16 0.31 -1.57 16 22 C -0.15 -1.81 9.03 37.15 0.34 -1.47 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.21 7.49 -51.93 -0.39 0.82 16 27 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 28 H 0.07 1.26 6.15 -51.93 -0.32 0.94 16 29 H 0.03 0.57 6.23 -51.93 -0.32 0.24 16 30 H 0.02 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.00 -0.10 8.02 -51.93 -0.42 -0.51 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 34 H 0.09 1.58 8.02 -51.93 -0.42 1.16 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.11 2.46 5.48 -51.93 -0.28 2.18 16 38 H 0.07 1.00 7.62 -51.93 -0.40 0.61 16 39 H 0.06 0.76 6.69 -51.93 -0.35 0.41 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.72 6.29 -51.93 -0.33 0.39 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.74 6.33 -51.93 -0.33 0.41 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -28.62 336.76 -7.94 -36.56 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.85 Total: 1.07 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 0.34 Total: -15.54 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.14 Total: -37.28 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.35 Total: -6.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.62 -7.94 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721733593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.321 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds