Wall clock time and date at job start Mon Mar 30 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99858 * 2 1 4 4 C 1.52998 * 109.46887 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47412 * 302.15083 * 4 3 2 6 6 C 1.53001 * 109.47088 * 182.14718 * 4 3 2 7 7 N 1.46900 * 109.46899 * 62.50308 * 6 4 3 8 8 C 1.46902 * 111.00045 * 196.91647 * 7 6 4 9 9 C 1.50693 * 109.47284 * 162.03510 * 8 7 6 10 10 H 1.08005 * 119.99730 * 354.22432 * 9 8 7 11 11 C 1.37875 * 120.00404 * 174.22678 * 9 8 7 12 12 N 1.31513 * 119.99512 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00384 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47347 * 0.02562 * 13 11 9 15 15 H 1.48509 * 109.47086 * 120.00116 * 13 11 9 16 16 H 1.48504 * 109.47636 * 240.00053 * 13 11 9 17 17 C 1.46908 * 110.99816 * 72.96413 * 7 6 4 18 18 C 1.52996 * 117.49768 * 263.92901 * 17 7 6 19 19 C 1.52997 * 117.49692 * 195.30633 * 17 7 6 20 20 C 1.53003 * 109.47335 * 62.14984 * 4 3 2 21 21 C 1.53002 * 109.47010 * 64.42060 * 20 4 3 22 22 C 1.52991 * 109.47302 * 184.42720 * 20 4 3 23 23 H 1.09002 * 109.47228 * 59.99658 * 1 2 3 24 24 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46859 * 300.00020 * 1 2 3 26 26 H 1.08999 * 109.46740 * 60.00023 * 3 2 1 27 27 H 1.08993 * 109.47240 * 300.00225 * 3 2 1 28 28 H 1.08998 * 109.46965 * 302.50383 * 6 4 3 29 29 H 1.09004 * 109.47154 * 182.50412 * 6 4 3 30 30 H 1.08997 * 109.46607 * 42.03113 * 8 7 6 31 31 H 1.09001 * 109.47301 * 282.03787 * 8 7 6 32 32 H 0.97007 * 120.00097 * 180.02562 * 12 11 9 33 33 H 1.08995 * 115.54648 * 49.63715 * 17 7 6 34 34 H 1.08997 * 117.50104 * 0.02562 * 18 17 7 35 35 H 1.08995 * 117.49839 * 145.02482 * 18 17 7 36 36 H 1.08998 * 117.50077 * 214.97866 * 19 17 7 37 37 H 1.08997 * 117.49967 * 359.97438 * 19 17 7 38 38 H 1.08999 * 109.46989 * 304.42970 * 20 4 3 39 39 H 1.09000 * 109.46413 * 64.69830 * 21 20 4 40 40 H 1.08998 * 109.46839 * 184.69053 * 21 20 4 41 41 H 1.08993 * 109.47582 * 304.69455 * 21 20 4 42 42 H 1.08994 * 109.47552 * 63.73600 * 22 20 4 43 43 H 1.09001 * 109.47144 * 183.73167 * 22 20 4 44 44 H 1.08998 * 109.47593 * 303.72939 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8541 0.6110 0.8710 6 6 4.1576 2.5814 0.0547 7 7 3.7684 3.2427 1.3074 8 6 3.9950 4.6921 1.2301 9 6 3.2029 5.3827 2.3101 10 1 2.5208 4.8153 2.9261 11 6 3.3488 6.7387 2.5120 12 7 4.1790 7.4296 1.7616 13 14 2.3664 7.5949 3.8503 14 1 1.5103 6.6021 4.5479 15 1 3.2970 8.2176 4.8259 16 1 1.5115 8.6456 3.2416 17 6 4.4786 2.6592 2.4534 18 6 3.7556 1.5750 3.2550 19 6 3.9410 2.9718 3.8513 20 6 3.9912 0.4724 -1.2745 21 6 3.6412 1.3314 -2.4913 22 6 5.5044 0.2531 -1.2230 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8038 3.1698 -0.7919 29 1 5.2435 2.4974 0.0103 30 1 3.6754 5.0582 0.2545 31 1 5.0559 4.9018 1.3670 32 1 4.2820 8.3836 1.9038 33 1 5.5584 2.5651 2.3388 34 1 2.7531 1.2944 2.9319 35 1 4.3597 0.7673 3.6680 36 1 4.6671 3.0829 4.6565 37 1 3.0607 3.6107 3.9206 38 1 3.4869 -0.4907 -1.3526 39 1 4.2098 2.2606 -2.4555 40 1 3.8899 0.7882 -3.4030 41 1 2.5750 1.5572 -2.4822 42 1 5.7472 -0.4129 -0.3952 43 1 5.8387 -0.1942 -2.1592 44 1 6.0056 1.2102 -1.0784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721733593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:36 Heat of formation + Delta-G solvation = -45.707083 kcal Electronic energy + Delta-G solvation = -20471.364969 eV Core-core repulsion = 17616.738516 eV Total energy + Delta-G solvation = -2854.626453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24696 -38.62138 -37.12579 -35.25772 -34.05983 -31.14900 -29.10339 -28.01061 -27.30872 -25.43343 -24.11721 -23.72048 -23.01660 -21.19688 -19.76549 -18.44501 -17.30682 -16.96389 -16.78470 -16.55654 -16.16980 -15.79033 -15.50975 -14.99070 -14.47600 -14.38670 -14.07767 -13.88789 -13.68835 -13.34449 -13.00500 -12.95710 -12.70367 -12.64047 -12.50819 -12.34056 -12.22693 -12.09595 -11.84281 -11.48181 -11.36246 -11.28686 -11.03915 -10.90822 -10.63558 -10.51719 -10.42588 -8.97170 -8.14724 -6.21771 1.40466 1.41743 1.54078 2.42089 2.93598 3.07203 3.17785 3.27209 3.90744 3.99713 4.09955 4.20961 4.28948 4.37207 4.42092 4.49592 4.53970 4.61198 4.66409 4.74723 4.79284 4.83042 4.86729 4.88571 4.89433 4.92947 5.05271 5.10706 5.13209 5.15297 5.21736 5.30995 5.37211 5.41129 5.49133 5.54855 5.58359 5.79975 6.13421 6.34626 6.44446 6.68963 6.94420 7.46171 8.96295 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.006045 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.298597 B = 4630.587934 C = 4863.421999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.079 3.921 4 C -0.060 4.060 5 H 0.075 0.925 6 C 0.066 3.934 7 N -0.512 5.512 8 C 0.211 3.789 9 C -0.502 4.502 10 H 0.071 0.929 11 C -0.001 4.001 12 N -0.939 5.939 13 Si 0.960 3.040 14 H -0.262 1.262 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.007 3.993 18 C -0.146 4.146 19 C -0.169 4.169 20 C -0.083 4.083 21 C -0.148 4.148 22 C -0.146 4.146 23 H 0.043 0.957 24 H 0.102 0.898 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.034 0.966 30 H -0.002 1.002 31 H -0.037 1.037 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -15.409 -3.723 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C 0.003 3.997 4 C -0.079 4.079 5 H 0.093 0.907 6 C -0.062 4.062 7 N -0.236 5.236 8 C 0.085 3.915 9 C -0.540 4.540 10 H 0.089 0.911 11 C -0.198 4.198 12 N -0.581 5.581 13 Si 0.786 3.214 14 H -0.186 1.186 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.103 4.103 18 C -0.183 4.183 19 C -0.206 4.206 20 C -0.102 4.102 21 C -0.205 4.205 22 C -0.203 4.203 23 H 0.062 0.938 24 H 0.120 0.880 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.017 0.983 31 H -0.019 1.019 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.849 -15.472 -3.686 16.158 hybrid contribution 0.437 1.596 0.356 1.693 sum -2.412 -13.876 -3.330 14.472 Atomic orbital electron populations 1.22856 0.80318 1.03539 1.00179 1.87774 1.20677 1.28537 1.95508 1.22403 0.93767 0.83636 0.99888 1.21001 0.92947 0.94945 0.99023 0.90705 1.22155 0.97378 0.94827 0.91882 1.61838 1.55923 1.04036 1.01798 1.19361 0.93139 0.83315 0.95684 1.21579 1.23055 0.92708 1.16646 0.91131 1.25834 0.96701 0.98423 0.98798 1.70100 1.38568 1.07900 1.41489 0.85467 0.78525 0.78470 0.78987 1.18567 1.20782 1.20833 1.22156 0.93804 1.03761 0.90536 1.23008 1.01611 0.91572 1.02154 1.23039 1.03664 0.98818 0.95054 1.21025 0.96501 0.99068 0.93574 1.21917 1.01100 0.99708 0.97814 1.21869 0.94967 1.01317 1.02134 0.93806 0.87973 0.94396 0.93786 0.93916 0.92122 0.94829 0.98349 1.01908 0.93042 0.91498 0.89265 0.87220 0.88899 0.89247 0.90330 0.93443 0.91488 0.93123 0.92545 0.91499 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -11.44 10.04 -148.98 -1.50 -12.93 16 3 C 0.08 2.44 5.04 71.98 0.36 2.80 16 4 C -0.06 -1.79 1.84 -10.79 -0.02 -1.81 16 5 H 0.07 2.29 6.56 -2.39 -0.02 2.28 16 6 C 0.07 2.34 3.65 86.30 0.32 2.65 16 7 N -0.51 -21.68 3.83 -875.53 -3.36 -25.03 16 8 C 0.21 11.16 4.75 85.55 0.41 11.56 16 9 C -0.50 -27.82 7.92 25.60 0.20 -27.61 16 10 H 0.07 3.83 5.54 -2.91 -0.02 3.82 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 12 N -0.94 -56.70 13.29 21.45 0.28 -56.42 16 13 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 C 0.01 0.25 4.40 44.91 0.20 0.45 16 18 C -0.15 -4.61 9.19 30.59 0.28 -4.32 16 19 C -0.17 -6.33 9.40 30.59 0.29 -6.04 16 20 C -0.08 -2.05 2.63 -10.80 -0.03 -2.08 16 21 C -0.15 -3.55 8.41 71.98 0.61 -2.94 16 22 C -0.15 -3.27 9.03 71.98 0.65 -2.62 16 23 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.04 1.56 7.49 -2.39 -0.02 1.54 16 27 H 0.04 1.31 6.35 -2.39 -0.02 1.29 16 28 H 0.06 2.26 6.15 -2.39 -0.01 2.25 16 29 H 0.03 1.19 6.23 -2.39 -0.01 1.18 16 30 H 0.00 -0.09 7.67 -2.39 -0.02 -0.11 16 31 H -0.04 -2.16 8.02 -2.39 -0.02 -2.18 16 32 H 0.26 14.88 8.31 -92.70 -0.77 14.10 16 33 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 34 H 0.09 2.90 8.02 -2.39 -0.02 2.88 16 35 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.09 3.84 5.48 -2.39 -0.01 3.83 16 38 H 0.08 1.93 7.62 -2.39 -0.02 1.92 16 39 H 0.05 1.22 6.69 -2.39 -0.02 1.21 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.25 6.29 -2.39 -0.02 1.24 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 1.14 6.33 -2.39 -0.02 1.13 16 Total: -1.00 -62.09 336.76 3.38 -58.71 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.95 Total: 17.01 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.97 Total: -27.69 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.07 Total: -81.45 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.50 Total: -12.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.09 3.38 -58.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721733593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.003 kcal (2) G-P(sol) polarization free energy of solvation -62.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds