Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00247 * 2 1 4 4 C 1.52999 * 109.47456 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47055 * 56.57356 * 4 3 2 6 6 C 1.52997 * 109.47349 * 176.57624 * 4 3 2 7 7 N 1.46898 * 109.47150 * 294.40026 * 6 4 3 8 8 C 1.47843 * 111.00091 * 291.76414 * 7 6 4 9 9 C 1.54909 * 104.79856 * 213.63689 * 8 7 6 10 10 C 1.55146 * 101.64960 * 37.06819 * 9 8 7 11 11 H 1.09001 * 110.85014 * 82.80583 * 10 9 8 12 12 C 1.50703 * 110.70203 * 205.96525 * 10 9 8 13 13 H 1.07993 * 119.99774 * 113.60704 * 12 10 9 14 14 C 1.37876 * 119.99803 * 293.59750 * 12 10 9 15 15 N 1.31513 * 120.00354 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99869 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47414 * 90.00145 * 16 14 12 18 18 H 1.48500 * 109.47421 * 210.00270 * 16 14 12 19 19 H 1.48504 * 109.46932 * 330.00384 * 16 14 12 20 20 C 1.47442 * 110.99990 * 170.92331 * 7 6 4 21 21 C 1.53001 * 109.47050 * 296.58111 * 4 3 2 22 22 C 1.53003 * 109.46893 * 174.03902 * 21 4 3 23 23 C 1.53001 * 109.46988 * 294.03510 * 21 4 3 24 24 H 1.08999 * 109.46727 * 299.99861 * 1 2 3 25 25 H 1.09007 * 109.47170 * 59.99593 * 1 2 3 26 26 H 1.08994 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.47086 * 60.00131 * 3 2 1 28 28 H 1.09003 * 109.47786 * 300.00303 * 3 2 1 29 29 H 1.09003 * 109.47044 * 54.40390 * 6 4 3 30 30 H 1.09005 * 109.47254 * 174.40147 * 6 4 3 31 31 H 1.09003 * 110.37572 * 332.46521 * 8 7 6 32 32 H 1.09004 * 110.37325 * 94.80775 * 8 7 6 33 33 H 1.08998 * 110.99198 * 278.98011 * 9 8 7 34 34 H 1.08994 * 111.02573 * 155.17535 * 9 8 7 35 35 H 0.97001 * 120.00120 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.88924 * 242.66469 * 20 7 6 37 37 H 1.09004 * 109.88708 * 3.84931 * 20 7 6 38 38 H 1.08993 * 109.47354 * 54.03836 * 21 4 3 39 39 H 1.09001 * 109.47083 * 297.95445 * 22 21 4 40 40 H 1.09007 * 109.46802 * 177.96248 * 22 21 4 41 41 H 1.08997 * 109.47581 * 57.96337 * 22 21 4 42 42 H 1.09000 * 109.46945 * 304.98305 * 23 21 4 43 43 H 1.09000 * 109.47179 * 64.98240 * 23 21 4 44 44 H 1.08997 * 109.47297 * 184.98379 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8533 0.5914 -0.8568 6 6 4.1577 2.5797 -0.0855 7 7 3.8287 3.1832 -1.3837 8 6 4.5129 2.4746 -2.4861 9 6 4.8241 3.5750 -3.5311 10 6 5.1790 4.7801 -2.6207 11 1 6.2184 4.7285 -2.2964 12 6 4.9082 6.0818 -3.3302 13 1 4.1288 6.7390 -2.9738 14 6 5.6556 6.4337 -4.4341 15 7 6.6044 5.6332 -4.8682 16 14 5.3203 8.0475 -5.3131 17 1 6.1556 9.1198 -4.7150 18 1 5.6539 7.9054 -6.7532 19 1 3.8849 8.4002 -5.1699 20 6 4.2239 4.6032 -1.4216 21 6 3.9924 0.5011 1.2910 22 6 5.4997 0.2462 1.2269 23 6 3.6783 1.4043 2.4853 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.7625 3.2038 0.7160 30 1 5.2403 2.5016 0.0149 31 1 5.4363 2.0186 -2.1289 32 1 3.8566 1.7178 -2.9160 33 1 3.9480 3.7921 -4.1422 34 1 5.6725 3.2935 -4.1546 35 1 7.1300 5.8807 -5.6450 36 1 3.3422 5.2302 -1.5543 37 1 4.7359 4.8704 -0.4971 38 1 3.4680 -0.4476 1.4050 39 1 5.7195 -0.4264 0.3978 40 1 5.8314 -0.2078 2.1608 41 1 6.0220 1.1910 1.0767 42 1 4.1303 2.3837 2.3290 43 1 2.5983 1.5141 2.5837 44 1 4.0824 0.9586 3.3942 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721746141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = -64.456028 kcal Electronic energy + Delta-G solvation = -20095.862777 eV Core-core repulsion = 17240.423309 eV Total energy + Delta-G solvation = -2855.439468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.13649 -37.55644 -36.09734 -33.02805 -30.98553 -29.07892 -28.23668 -27.16527 -26.58906 -24.78843 -23.73873 -22.63846 -20.18636 -19.49534 -18.49128 -16.54890 -16.30577 -15.94358 -15.62771 -14.88600 -14.56165 -14.29939 -13.91775 -13.77823 -13.28499 -13.18583 -12.51363 -12.37656 -12.12808 -12.05709 -11.79488 -11.68477 -11.34561 -11.23745 -11.02693 -10.96087 -10.73696 -10.61020 -10.42265 -10.27710 -10.14808 -10.03143 -9.61059 -9.45847 -9.24079 -8.84848 -8.38384 -7.55358 -6.01826 -4.04265 3.30785 3.37672 3.41114 3.88745 4.43517 4.61148 4.89501 5.00203 5.09524 5.29207 5.31269 5.33229 5.43918 5.47362 5.60620 5.64357 5.69911 5.73017 5.78200 5.89500 5.92430 5.99650 6.02327 6.05592 6.16427 6.21946 6.26527 6.35856 6.39129 6.50536 6.51954 6.64211 6.88959 7.17029 7.21802 7.30159 7.60810 7.63966 7.84953 7.91562 8.01094 8.42725 8.97616 9.59704 11.08304 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029402 B = 0.004629 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.081054 B = 6047.539758 C = 6425.572460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.071 3.929 4 C -0.073 4.073 5 H 0.077 0.923 6 C 0.055 3.945 7 N -0.534 5.534 8 C 0.038 3.962 9 C -0.105 4.105 10 C 0.035 3.965 11 H 0.029 0.971 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.048 3.952 21 C -0.089 4.089 22 C -0.150 4.150 23 C -0.151 4.151 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 -10.319 11.326 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C -0.005 4.005 4 C -0.092 4.092 5 H 0.096 0.904 6 C -0.074 4.074 7 N -0.258 5.258 8 C -0.089 4.089 9 C -0.143 4.143 10 C 0.015 3.985 11 H 0.048 0.952 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.079 4.079 21 C -0.108 4.108 22 C -0.207 4.207 23 C -0.208 4.208 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.259 -10.530 11.131 16.955 hybrid contribution 0.563 1.172 -0.432 1.370 sum -6.695 -9.358 10.699 15.712 Atomic orbital electron populations 1.22657 0.81736 1.02064 0.99828 1.87819 1.19069 1.29095 1.95462 1.22581 0.93468 0.83631 1.00850 1.21132 0.93319 0.96659 0.98087 0.90433 1.22365 0.97910 0.94204 0.92891 1.63612 1.56731 1.03542 1.01931 1.23129 0.95307 0.97468 0.93045 1.22628 1.00567 0.94359 0.96789 1.19803 0.93935 0.94316 0.90406 0.95242 1.21083 1.17955 1.03698 1.12126 0.92507 1.24975 0.94964 0.96821 0.97147 1.69960 1.21428 1.36569 1.24962 0.86617 0.78628 0.84028 0.78865 1.20756 1.21284 1.19870 1.22980 0.99138 0.87071 0.98752 1.21074 0.96049 0.99229 0.94411 1.21912 0.95830 1.01733 1.01234 1.21948 1.01283 1.00052 0.97488 0.94548 0.94144 0.90201 0.93805 0.91629 0.91239 0.94235 0.94981 0.92215 0.92570 0.91368 0.93075 0.91379 0.94996 0.90588 0.92788 0.93063 0.92416 0.92306 0.92828 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.40 -5.37 10.07 -35.23 -0.35 -5.73 16 3 C 0.07 0.97 5.11 37.16 0.19 1.16 16 4 C -0.07 -1.01 1.86 -90.62 -0.17 -1.18 16 5 H 0.08 1.18 7.28 -51.93 -0.38 0.80 16 6 C 0.05 0.85 3.11 -3.83 -0.01 0.83 16 7 N -0.53 -9.94 4.59 -231.25 -1.06 -11.00 16 8 C 0.04 0.74 5.67 -2.30 -0.01 0.73 16 9 C -0.10 -2.45 5.94 -24.59 -0.15 -2.60 16 10 C 0.03 0.86 2.78 -89.95 -0.25 0.61 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -13.98 8.47 -34.44 -0.29 -14.27 16 13 H 0.06 1.54 7.53 -52.49 -0.40 1.14 16 14 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 15 N -0.89 -25.62 12.48 55.43 0.69 -24.93 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.05 1.00 6.45 -2.84 -0.02 0.99 16 21 C -0.09 -1.06 2.64 -90.62 -0.24 -1.30 16 22 C -0.15 -1.71 9.02 37.16 0.34 -1.37 16 23 C -0.15 -1.63 8.50 37.16 0.32 -1.32 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.56 6.55 -51.92 -0.34 0.22 16 28 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 29 H 0.07 1.02 6.49 -51.93 -0.34 0.69 16 30 H 0.04 0.63 6.05 -51.93 -0.31 0.32 16 31 H 0.03 0.61 7.64 -51.93 -0.40 0.21 16 32 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 33 H 0.06 1.37 8.04 -51.93 -0.42 0.96 16 34 H 0.07 1.71 7.76 -51.93 -0.40 1.31 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.07 1.48 7.63 -51.93 -0.40 1.08 16 37 H 0.03 0.63 7.56 -51.93 -0.39 0.24 16 38 H 0.08 0.94 7.62 -51.93 -0.40 0.55 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.70 6.40 -51.93 -0.33 0.36 16 42 H 0.06 0.66 6.17 -51.93 -0.32 0.34 16 43 H 0.05 0.57 6.76 -51.93 -0.35 0.22 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -28.24 334.49 -8.07 -36.31 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.08 Total: -1.35 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 0.72 Total: -14.61 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.37 Total: -35.93 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.35 Total: -5.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.24 -8.07 -36.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721746141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.142 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds