Wall clock time and date at job start Mon Mar 30 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 114.00247 * 2 1 4 4 C 1.52999 * 109.47456 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47055 * 56.57356 * 4 3 2 6 6 C 1.52997 * 109.47349 * 176.57624 * 4 3 2 7 7 N 1.46898 * 109.47150 * 294.40026 * 6 4 3 8 8 C 1.47843 * 111.00091 * 291.76414 * 7 6 4 9 9 C 1.54909 * 104.79856 * 213.63689 * 8 7 6 10 10 C 1.55146 * 101.64960 * 37.06819 * 9 8 7 11 11 H 1.09001 * 110.85014 * 82.80583 * 10 9 8 12 12 C 1.50703 * 110.70203 * 205.96525 * 10 9 8 13 13 H 1.07993 * 119.99774 * 113.60704 * 12 10 9 14 14 C 1.37876 * 119.99803 * 293.59750 * 12 10 9 15 15 N 1.31513 * 120.00354 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99869 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47414 * 90.00145 * 16 14 12 18 18 H 1.48500 * 109.47421 * 210.00270 * 16 14 12 19 19 H 1.48504 * 109.46932 * 330.00384 * 16 14 12 20 20 C 1.47442 * 110.99990 * 170.92331 * 7 6 4 21 21 C 1.53001 * 109.47050 * 296.58111 * 4 3 2 22 22 C 1.53003 * 109.46893 * 174.03902 * 21 4 3 23 23 C 1.53001 * 109.46988 * 294.03510 * 21 4 3 24 24 H 1.08999 * 109.46727 * 299.99861 * 1 2 3 25 25 H 1.09007 * 109.47170 * 59.99593 * 1 2 3 26 26 H 1.08994 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.47086 * 60.00131 * 3 2 1 28 28 H 1.09003 * 109.47786 * 300.00303 * 3 2 1 29 29 H 1.09003 * 109.47044 * 54.40390 * 6 4 3 30 30 H 1.09005 * 109.47254 * 174.40147 * 6 4 3 31 31 H 1.09003 * 110.37572 * 332.46521 * 8 7 6 32 32 H 1.09004 * 110.37325 * 94.80775 * 8 7 6 33 33 H 1.08998 * 110.99198 * 278.98011 * 9 8 7 34 34 H 1.08994 * 111.02573 * 155.17535 * 9 8 7 35 35 H 0.97001 * 120.00120 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.88924 * 242.66469 * 20 7 6 37 37 H 1.09004 * 109.88708 * 3.84931 * 20 7 6 38 38 H 1.08993 * 109.47354 * 54.03836 * 21 4 3 39 39 H 1.09001 * 109.47083 * 297.95445 * 22 21 4 40 40 H 1.09007 * 109.46802 * 177.96248 * 22 21 4 41 41 H 1.08997 * 109.47581 * 57.96337 * 22 21 4 42 42 H 1.09000 * 109.46945 * 304.98305 * 23 21 4 43 43 H 1.09000 * 109.47179 * 64.98240 * 23 21 4 44 44 H 1.08997 * 109.47297 * 184.98379 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8533 0.5914 -0.8568 6 6 4.1577 2.5797 -0.0855 7 7 3.8287 3.1832 -1.3837 8 6 4.5129 2.4746 -2.4861 9 6 4.8241 3.5750 -3.5311 10 6 5.1790 4.7801 -2.6207 11 1 6.2184 4.7285 -2.2964 12 6 4.9082 6.0818 -3.3302 13 1 4.1288 6.7390 -2.9738 14 6 5.6556 6.4337 -4.4341 15 7 6.6044 5.6332 -4.8682 16 14 5.3203 8.0475 -5.3131 17 1 6.1556 9.1198 -4.7150 18 1 5.6539 7.9054 -6.7532 19 1 3.8849 8.4002 -5.1699 20 6 4.2239 4.6032 -1.4216 21 6 3.9924 0.5011 1.2910 22 6 5.4997 0.2462 1.2269 23 6 3.6783 1.4043 2.4853 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8899 29 1 3.7625 3.2038 0.7160 30 1 5.2403 2.5016 0.0149 31 1 5.4363 2.0186 -2.1289 32 1 3.8566 1.7178 -2.9160 33 1 3.9480 3.7921 -4.1422 34 1 5.6725 3.2935 -4.1546 35 1 7.1300 5.8807 -5.6450 36 1 3.3422 5.2302 -1.5543 37 1 4.7359 4.8704 -0.4971 38 1 3.4680 -0.4476 1.4050 39 1 5.7195 -0.4264 0.3978 40 1 5.8314 -0.2078 2.1608 41 1 6.0220 1.1910 1.0767 42 1 4.1303 2.3837 2.3290 43 1 2.5983 1.5141 2.5837 44 1 4.0824 0.9586 3.3942 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721746141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:19 Heat of formation + Delta-G solvation = -81.027589 kcal Electronic energy + Delta-G solvation = -20096.581374 eV Core-core repulsion = 17240.423309 eV Total energy + Delta-G solvation = -2856.158065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43522 -38.89357 -37.21418 -34.94693 -32.53826 -30.37629 -30.02493 -28.08244 -27.67260 -26.36704 -25.27385 -23.74706 -21.81797 -21.33353 -19.62317 -18.57175 -17.42015 -17.15354 -16.72517 -16.49015 -15.97417 -15.82256 -15.21912 -14.91476 -14.55703 -14.33368 -14.16733 -13.80664 -13.45327 -13.40690 -12.99001 -12.97753 -12.82011 -12.66969 -12.56208 -12.42081 -12.23337 -12.14356 -11.83582 -11.58845 -11.40431 -11.33727 -11.30012 -10.99262 -10.89614 -10.49206 -10.44533 -9.11204 -8.14190 -6.23688 1.41351 1.42284 1.52668 2.42972 2.92156 3.16001 3.18037 3.86195 3.94247 4.05329 4.18944 4.25445 4.38806 4.46528 4.47639 4.53902 4.56994 4.60551 4.63834 4.71853 4.76165 4.80167 4.86311 4.88044 4.91561 5.01542 5.02344 5.09202 5.12448 5.25519 5.28557 5.31526 5.36643 5.51412 5.56288 5.58408 5.72285 5.87990 6.16717 6.32008 6.34003 6.37600 6.85371 7.43917 8.95491 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029402 B = 0.004629 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.081054 B = 6047.539758 C = 6425.572460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.076 3.924 4 C -0.068 4.068 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.531 5.531 8 C 0.053 3.947 9 C -0.098 4.098 10 C 0.026 3.974 11 H -0.001 1.001 12 C -0.529 4.529 13 H 0.056 0.944 14 C 0.013 3.987 15 N -0.921 5.921 16 Si 0.955 3.045 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.267 1.267 20 C 0.060 3.940 21 C -0.083 4.083 22 C -0.149 4.149 23 C -0.148 4.148 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 -10.611 12.638 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.000 4.000 4 C -0.087 4.087 5 H 0.081 0.919 6 C -0.070 4.070 7 N -0.255 5.255 8 C -0.075 4.075 9 C -0.137 4.137 10 C 0.007 3.993 11 H 0.017 0.983 12 C -0.567 4.567 13 H 0.074 0.926 14 C -0.186 4.186 15 N -0.560 5.560 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.068 4.068 21 C -0.102 4.102 22 C -0.206 4.206 23 C -0.205 4.205 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.327 -10.829 12.459 18.489 hybrid contribution 0.880 1.220 -0.819 1.713 sum -7.447 -9.608 11.640 16.831 Atomic orbital electron populations 1.22861 0.80098 1.03509 1.00414 1.87791 1.20898 1.28818 1.95548 1.22458 0.93223 0.83848 1.00458 1.21054 0.93579 0.95299 0.98734 0.91911 1.22431 0.98043 0.95263 0.91311 1.63614 1.56372 1.02286 1.03278 1.22971 0.96001 0.96345 0.92164 1.22419 0.98778 0.95443 0.97076 1.19776 0.93102 0.94195 0.92217 0.98331 1.21446 1.17952 1.04747 1.12564 0.92570 1.25764 0.94758 1.00146 0.97929 1.70085 1.22287 1.38278 1.25398 0.85594 0.78752 0.79980 0.77572 1.20072 1.21035 1.19136 1.22749 0.97889 0.88671 0.97486 1.21018 0.96235 0.99159 0.93747 1.21904 0.95403 1.01325 1.01977 1.21927 1.01541 0.99597 0.97467 0.93273 0.94226 0.88418 0.92683 0.93497 0.89961 0.94496 0.94469 0.90688 0.94112 0.93793 0.93075 0.91926 0.93822 0.90640 0.93205 0.91447 0.93250 0.92688 0.92541 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.43 10.07 -148.98 -1.50 -11.93 16 3 C 0.08 1.96 5.11 71.98 0.37 2.33 16 4 C -0.07 -1.77 1.86 -10.79 -0.02 -1.79 16 5 H 0.06 1.83 7.28 -2.39 -0.02 1.82 16 6 C 0.06 1.69 3.11 86.30 0.27 1.96 16 7 N -0.53 -19.35 4.59 -885.53 -4.07 -23.42 16 8 C 0.05 2.04 5.67 86.77 0.49 2.53 16 9 C -0.10 -4.72 5.94 31.98 0.19 -4.53 16 10 C 0.03 1.35 2.78 -10.36 -0.03 1.32 16 11 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 12 C -0.53 -29.39 8.47 25.60 0.22 -29.17 16 13 H 0.06 3.05 7.53 -2.91 -0.02 3.03 16 14 C 0.01 0.72 5.36 84.65 0.45 1.17 16 15 N -0.92 -54.09 12.48 21.45 0.27 -53.83 16 16 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 C 0.06 2.50 6.45 86.64 0.56 3.05 16 21 C -0.08 -1.80 2.64 -10.79 -0.03 -1.83 16 22 C -0.15 -3.12 9.02 71.98 0.65 -2.47 16 23 C -0.15 -2.82 8.50 71.98 0.61 -2.21 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.28 6.55 -2.38 -0.02 1.27 16 28 H 0.05 1.38 7.68 -2.39 -0.02 1.36 16 29 H 0.08 2.24 6.49 -2.39 -0.02 2.23 16 30 H 0.04 1.13 6.05 -2.38 -0.01 1.12 16 31 H 0.04 1.40 7.64 -2.39 -0.02 1.38 16 32 H 0.07 2.69 8.11 -2.38 -0.02 2.67 16 33 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 34 H 0.04 2.28 7.76 -2.39 -0.02 2.26 16 35 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.06 2.69 7.63 -2.38 -0.02 2.68 16 37 H 0.04 1.70 7.56 -2.39 -0.02 1.69 16 38 H 0.08 1.70 7.62 -2.39 -0.02 1.68 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.05 1.11 6.40 -2.39 -0.02 1.10 16 42 H 0.05 1.09 6.17 -2.39 -0.01 1.07 16 43 H 0.06 1.04 6.76 -2.39 -0.02 1.03 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -60.45 334.49 2.64 -57.81 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.94 Total: 13.33 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.98 Total: -27.88 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -3.80 Total: -77.24 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -1.50 Total: -11.93 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.45 2.64 -57.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721746141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.214 kcal (2) G-P(sol) polarization free energy of solvation -60.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds