Wall clock time and date at job start Mon Mar 30 2020 06:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00241 * 2 1 4 4 C 1.53001 * 109.47455 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46850 * 304.08493 * 4 3 2 6 6 C 1.53001 * 109.47249 * 184.09274 * 4 3 2 7 7 N 1.46899 * 109.47021 * 172.97496 * 6 4 3 8 8 C 1.47843 * 111.00215 * 290.84124 * 7 6 4 9 9 C 1.54914 * 104.79545 * 213.63829 * 8 7 6 10 10 C 1.55142 * 101.65269 * 37.06861 * 9 8 7 11 11 H 1.08993 * 110.85481 * 82.79857 * 10 9 8 12 12 C 1.50702 * 110.70525 * 205.96708 * 10 9 8 13 13 H 1.07991 * 120.00015 * 113.59742 * 12 10 9 14 14 C 1.37876 * 119.99462 * 293.60032 * 12 10 9 15 15 N 1.31512 * 120.00517 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99909 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46930 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47467 * 119.99760 * 16 14 12 19 19 H 1.48496 * 109.47089 * 239.99874 * 16 14 12 20 20 C 1.47443 * 110.99676 * 169.99621 * 7 6 4 21 21 C 1.53000 * 109.47278 * 64.08531 * 4 3 2 22 22 C 1.53005 * 109.46776 * 67.00202 * 21 4 3 23 23 C 1.52996 * 109.47153 * 186.99767 * 21 4 3 24 24 H 1.08999 * 109.47474 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99574 * 1 2 3 26 26 H 1.09000 * 109.47228 * 59.99612 * 1 2 3 27 27 H 1.08997 * 109.46930 * 60.00465 * 3 2 1 28 28 H 1.09006 * 109.47188 * 300.00547 * 3 2 1 29 29 H 1.08996 * 109.46976 * 52.97219 * 6 4 3 30 30 H 1.08996 * 109.46701 * 292.97533 * 6 4 3 31 31 H 1.09003 * 110.37136 * 332.46515 * 8 7 6 32 32 H 1.08993 * 110.37286 * 94.80895 * 8 7 6 33 33 H 1.09001 * 110.98667 * 278.97362 * 9 8 7 34 34 H 1.08994 * 111.02032 * 155.17192 * 9 8 7 35 35 H 0.96998 * 120.00669 * 180.02562 * 15 14 12 36 36 H 1.09008 * 109.88817 * 242.66307 * 20 7 6 37 37 H 1.09000 * 109.89014 * 3.85065 * 20 7 6 38 38 H 1.08998 * 109.47040 * 307.00266 * 21 4 3 39 39 H 1.08999 * 109.47115 * 186.25430 * 22 21 4 40 40 H 1.08997 * 109.47053 * 306.25627 * 22 21 4 41 41 H 1.08997 * 109.47255 * 66.25277 * 22 21 4 42 42 H 1.09001 * 109.46988 * 50.40405 * 23 21 4 43 43 H 1.08993 * 109.47350 * 170.40171 * 23 21 4 44 44 H 1.09003 * 109.47453 * 290.40403 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8525 0.5816 0.8503 6 6 4.1575 2.5787 0.1023 7 7 5.6115 2.4548 0.2709 8 6 5.9452 1.8936 1.5973 9 6 7.2771 2.5788 1.9930 10 6 7.0711 4.0110 1.4335 11 1 6.4961 4.6208 2.1303 12 6 8.3967 4.6599 1.1289 13 1 8.6653 4.8857 0.1076 14 6 9.2664 4.9652 2.1542 15 7 8.9391 4.6906 3.3980 16 14 10.9093 5.7701 1.7768 17 1 11.0360 5.9732 0.3112 18 1 10.9879 7.0824 2.4675 19 1 12.0104 4.8942 2.2517 20 6 6.2726 3.7658 0.1358 21 6 3.9936 0.5162 -1.2984 22 6 3.7041 1.4443 -2.4799 23 6 5.4961 0.2370 -1.2254 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.7356 3.1024 0.9601 30 1 3.9437 3.1399 -0.8072 31 1 5.1650 2.1357 2.3190 32 1 6.0793 0.8141 1.5298 33 1 8.1251 2.0902 1.5131 34 1 7.4010 2.5967 3.0758 35 1 9.5508 4.9057 4.1194 36 1 6.9490 3.7537 -0.7190 37 1 5.5237 4.5473 0.0079 38 1 3.4558 -0.4223 -1.4332 39 1 3.9269 0.9257 -3.4123 40 1 2.6529 1.7323 -2.4665 41 1 4.3261 2.3360 -2.4024 42 1 5.7248 -0.2796 -0.2933 43 1 5.7910 -0.3874 -2.0687 44 1 6.0430 1.1793 -1.2623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721746142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:22 Heat of formation + Delta-G solvation = -56.043853 kcal Electronic energy + Delta-G solvation = -20250.207027 eV Core-core repulsion = 17395.132339 eV Total energy + Delta-G solvation = -2855.074688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.23187 -37.71250 -35.84182 -32.87480 -30.85040 -29.45553 -28.28592 -26.79814 -26.68432 -24.83075 -23.56499 -22.45993 -20.16706 -19.46506 -18.52901 -16.58672 -16.46852 -16.04596 -15.55919 -14.96940 -14.73567 -14.32088 -13.88924 -13.77783 -13.03110 -12.86126 -12.45062 -12.19283 -12.09572 -11.86617 -11.71927 -11.50030 -11.31007 -11.28053 -11.02904 -10.86325 -10.66200 -10.55214 -10.28629 -10.14228 -10.11427 -9.93624 -9.63847 -9.56012 -9.25368 -8.82944 -8.38073 -7.42801 -6.01567 -4.03856 3.30255 3.38517 3.42491 3.67887 4.44360 4.73119 4.89413 5.07846 5.14561 5.18542 5.24005 5.31892 5.44509 5.49226 5.51944 5.67287 5.70499 5.74129 5.87983 5.91433 6.08735 6.14346 6.17318 6.24804 6.32618 6.37287 6.46063 6.46863 6.57892 6.62714 6.74380 6.89533 7.11653 7.14660 7.20687 7.28035 7.61244 7.64770 7.84969 7.91996 8.01404 8.43138 8.98384 9.60206 11.08517 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039837 B = 0.004477 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.689739 B = 6253.327309 C = 6507.876812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.064 3.936 4 C -0.077 4.077 5 H 0.078 0.922 6 C 0.056 3.944 7 N -0.519 5.519 8 C 0.036 3.964 9 C -0.104 4.104 10 C 0.034 3.966 11 H 0.029 0.971 12 C -0.509 4.509 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.046 3.954 21 C -0.074 4.074 22 C -0.147 4.147 23 C -0.147 4.147 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.029 0.971 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 -7.241 -6.964 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.013 4.013 4 C -0.096 4.096 5 H 0.096 0.904 6 C -0.073 4.073 7 N -0.243 5.243 8 C -0.091 4.091 9 C -0.143 4.143 10 C 0.015 3.985 11 H 0.047 0.953 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.081 4.081 21 C -0.092 4.092 22 C -0.205 4.205 23 C -0.204 4.204 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.407 -7.712 -7.181 17.053 hybrid contribution 0.255 1.213 0.641 1.395 sum -13.152 -6.500 -6.539 16.062 Atomic orbital electron populations 1.22700 0.81639 1.02416 0.99730 1.87883 1.19088 1.28289 1.95345 1.22651 0.94523 0.84308 0.99853 1.21196 0.91211 0.97539 0.99670 0.90404 1.22262 0.89796 0.94938 1.00316 1.63717 1.06315 1.24152 1.30070 1.23170 0.98543 0.98829 0.88576 1.22621 0.93504 0.97299 1.00861 1.19810 0.94984 0.92918 0.90800 0.95309 1.21122 1.01142 1.39328 0.93122 0.92436 1.24979 0.98262 0.95630 0.95089 1.69967 1.36345 1.47820 0.98792 0.86566 0.84113 0.79045 0.78460 1.19739 1.21154 1.21068 1.23005 0.96502 0.87210 1.01399 1.20865 0.97408 0.97741 0.93206 1.21941 1.00485 1.00255 0.97776 1.22058 0.95230 1.03707 0.99408 0.89893 0.94330 0.94334 0.93706 0.93121 0.95444 0.90884 0.95148 0.91979 0.92512 0.91459 0.93154 0.91254 0.95045 0.91951 0.93425 0.93679 0.91904 0.93622 0.95189 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.91 10.09 -35.23 -0.36 -5.27 16 3 C 0.06 0.77 5.20 37.16 0.19 0.97 16 4 C -0.08 -1.06 2.01 -90.62 -0.18 -1.25 16 5 H 0.08 1.19 7.21 -51.93 -0.37 0.81 16 6 C 0.06 0.84 3.61 -3.82 -0.01 0.83 16 7 N -0.52 -9.26 1.95 -231.25 -0.45 -9.71 16 8 C 0.04 0.69 5.56 -2.30 -0.01 0.67 16 9 C -0.10 -2.40 5.94 -24.59 -0.15 -2.55 16 10 C 0.03 0.84 2.78 -89.94 -0.25 0.59 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.51 -13.82 8.47 -34.44 -0.29 -14.11 16 13 H 0.06 1.55 7.53 -52.49 -0.40 1.15 16 14 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 15 N -0.89 -25.52 12.48 55.43 0.69 -24.83 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.05 0.94 6.45 -2.83 -0.02 0.92 16 21 C -0.07 -1.00 2.64 -90.62 -0.24 -1.23 16 22 C -0.15 -1.81 8.33 37.16 0.31 -1.50 16 23 C -0.15 -2.17 8.12 37.16 0.30 -1.87 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.57 6.35 -51.93 -0.33 0.24 16 29 H 0.03 0.43 7.84 -51.93 -0.41 0.03 16 30 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 31 H 0.03 0.57 7.62 -51.93 -0.40 0.17 16 32 H 0.06 1.11 7.16 -51.93 -0.37 0.74 16 33 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 34 H 0.07 1.67 7.76 -51.93 -0.40 1.27 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.47 7.63 -51.92 -0.40 1.07 16 37 H 0.03 0.61 7.55 -51.93 -0.39 0.22 16 38 H 0.06 0.87 7.62 -51.93 -0.40 0.47 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.51 6.31 -51.93 -0.33 0.18 16 41 H 0.06 0.83 6.52 -51.93 -0.34 0.49 16 42 H 0.04 0.70 7.15 -51.93 -0.37 0.33 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 1.63 5.85 -51.93 -0.30 1.33 16 LS Contribution 330.25 15.07 4.98 4.98 Total: -1.00 -27.89 330.25 -7.51 -35.41 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.02 Total: -1.29 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 0.67 Total: -15.50 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.24 Total: -34.54 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.36 Total: -5.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.89 -7.51 -35.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721746142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.638 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds