Wall clock time and date at job start Mon Mar 30 2020 06:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00241 * 2 1 4 4 C 1.53001 * 109.47455 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46850 * 304.08493 * 4 3 2 6 6 C 1.53001 * 109.47249 * 184.09274 * 4 3 2 7 7 N 1.46899 * 109.47021 * 172.97496 * 6 4 3 8 8 C 1.47843 * 111.00215 * 290.84124 * 7 6 4 9 9 C 1.54914 * 104.79545 * 213.63829 * 8 7 6 10 10 C 1.55142 * 101.65269 * 37.06861 * 9 8 7 11 11 H 1.08993 * 110.85481 * 82.79857 * 10 9 8 12 12 C 1.50702 * 110.70525 * 205.96708 * 10 9 8 13 13 H 1.07991 * 120.00015 * 113.59742 * 12 10 9 14 14 C 1.37876 * 119.99462 * 293.60032 * 12 10 9 15 15 N 1.31512 * 120.00517 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99909 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46930 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47467 * 119.99760 * 16 14 12 19 19 H 1.48496 * 109.47089 * 239.99874 * 16 14 12 20 20 C 1.47443 * 110.99676 * 169.99621 * 7 6 4 21 21 C 1.53000 * 109.47278 * 64.08531 * 4 3 2 22 22 C 1.53005 * 109.46776 * 67.00202 * 21 4 3 23 23 C 1.52996 * 109.47153 * 186.99767 * 21 4 3 24 24 H 1.08999 * 109.47474 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46938 * 299.99574 * 1 2 3 26 26 H 1.09000 * 109.47228 * 59.99612 * 1 2 3 27 27 H 1.08997 * 109.46930 * 60.00465 * 3 2 1 28 28 H 1.09006 * 109.47188 * 300.00547 * 3 2 1 29 29 H 1.08996 * 109.46976 * 52.97219 * 6 4 3 30 30 H 1.08996 * 109.46701 * 292.97533 * 6 4 3 31 31 H 1.09003 * 110.37136 * 332.46515 * 8 7 6 32 32 H 1.08993 * 110.37286 * 94.80895 * 8 7 6 33 33 H 1.09001 * 110.98667 * 278.97362 * 9 8 7 34 34 H 1.08994 * 111.02032 * 155.17192 * 9 8 7 35 35 H 0.96998 * 120.00669 * 180.02562 * 15 14 12 36 36 H 1.09008 * 109.88817 * 242.66307 * 20 7 6 37 37 H 1.09000 * 109.89014 * 3.85065 * 20 7 6 38 38 H 1.08998 * 109.47040 * 307.00266 * 21 4 3 39 39 H 1.08999 * 109.47115 * 186.25430 * 22 21 4 40 40 H 1.08997 * 109.47053 * 306.25627 * 22 21 4 41 41 H 1.08997 * 109.47255 * 66.25277 * 22 21 4 42 42 H 1.09001 * 109.46988 * 50.40405 * 23 21 4 43 43 H 1.08993 * 109.47350 * 170.40171 * 23 21 4 44 44 H 1.09003 * 109.47453 * 290.40403 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8525 0.5816 0.8503 6 6 4.1575 2.5787 0.1023 7 7 5.6115 2.4548 0.2709 8 6 5.9452 1.8936 1.5973 9 6 7.2771 2.5788 1.9930 10 6 7.0711 4.0110 1.4335 11 1 6.4961 4.6208 2.1303 12 6 8.3967 4.6599 1.1289 13 1 8.6653 4.8857 0.1076 14 6 9.2664 4.9652 2.1542 15 7 8.9391 4.6906 3.3980 16 14 10.9093 5.7701 1.7768 17 1 11.0360 5.9732 0.3112 18 1 10.9879 7.0824 2.4675 19 1 12.0104 4.8942 2.2517 20 6 6.2726 3.7658 0.1358 21 6 3.9936 0.5162 -1.2984 22 6 3.7041 1.4443 -2.4799 23 6 5.4961 0.2370 -1.2254 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.7356 3.1024 0.9601 30 1 3.9437 3.1399 -0.8072 31 1 5.1650 2.1357 2.3190 32 1 6.0793 0.8141 1.5298 33 1 8.1251 2.0902 1.5131 34 1 7.4010 2.5967 3.0758 35 1 9.5508 4.9057 4.1194 36 1 6.9490 3.7537 -0.7190 37 1 5.5237 4.5473 0.0079 38 1 3.4558 -0.4223 -1.4332 39 1 3.9269 0.9257 -3.4123 40 1 2.6529 1.7323 -2.4665 41 1 4.3261 2.3360 -2.4024 42 1 5.7248 -0.2796 -0.2933 43 1 5.7910 -0.3874 -2.0687 44 1 6.0430 1.1793 -1.2623 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721746142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:21 Heat of formation + Delta-G solvation = -70.598349 kcal Electronic energy + Delta-G solvation = -20250.838158 eV Core-core repulsion = 17395.132339 eV Total energy + Delta-G solvation = -2855.705819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52140 -38.91250 -37.07145 -34.80401 -32.31977 -30.79418 -30.02265 -27.86414 -27.69798 -26.41305 -25.03643 -23.60683 -21.79072 -21.27961 -19.70661 -18.55634 -17.47471 -17.10015 -16.69000 -16.50791 -16.18283 -15.79182 -15.39148 -14.84010 -14.39989 -14.18821 -13.97558 -13.79104 -13.35655 -13.09868 -12.96875 -12.87853 -12.81516 -12.66537 -12.44551 -12.42976 -12.29076 -12.10025 -11.75426 -11.59752 -11.31573 -11.22984 -11.15784 -11.01902 -10.85901 -10.50339 -10.47030 -8.92837 -8.13095 -6.22159 1.40644 1.42902 1.54230 2.43654 2.75187 3.18725 3.36607 3.84003 4.00300 4.08587 4.21848 4.32989 4.43731 4.48910 4.50764 4.57483 4.58010 4.62838 4.63959 4.66883 4.73468 4.75641 4.87710 4.94413 5.02764 5.05389 5.11946 5.25665 5.28312 5.30679 5.37258 5.39365 5.49327 5.60637 5.65378 5.75315 5.90080 6.00946 6.19843 6.26605 6.35683 6.41152 6.87460 7.45374 8.96596 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.039837 B = 0.004477 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.689739 B = 6253.327309 C = 6507.876812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.068 3.932 4 C -0.072 4.072 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.511 5.511 8 C 0.051 3.949 9 C -0.097 4.097 10 C 0.025 3.975 11 H -0.003 1.003 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.922 5.922 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.059 3.941 21 C -0.069 4.069 22 C -0.143 4.143 23 C -0.143 4.143 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.886 -7.522 -8.402 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.009 4.009 4 C -0.091 4.091 5 H 0.080 0.920 6 C -0.072 4.072 7 N -0.234 5.234 8 C -0.076 4.076 9 C -0.136 4.136 10 C 0.006 3.994 11 H 0.015 0.985 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.187 4.187 15 N -0.561 5.561 16 Si 0.780 3.220 17 H -0.189 1.189 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.069 4.069 21 C -0.088 4.088 22 C -0.200 4.200 23 C -0.200 4.200 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.550 -7.999 -8.631 18.713 hybrid contribution 0.557 1.273 1.098 1.771 sum -13.994 -6.726 -7.533 17.257 Atomic orbital electron populations 1.22903 0.79795 1.03665 1.00685 1.87842 1.21128 1.28406 1.95535 1.22560 0.93065 0.84546 1.00740 1.21093 0.92682 0.96054 0.99248 0.91988 1.22337 0.87714 0.96276 1.00851 1.63753 1.08281 1.22408 1.29003 1.23007 0.96173 0.99274 0.89160 1.22401 0.95258 0.97025 0.98907 1.19787 0.94366 0.92945 0.92290 0.98475 1.21480 1.02321 1.39438 0.93125 0.92535 1.25763 1.01731 0.96276 0.94938 1.70091 1.37558 1.48845 0.99609 0.85554 0.79811 0.78021 0.78569 1.18903 1.20760 1.20807 1.22760 0.96426 0.88858 0.98809 1.20818 0.96276 0.98064 0.93623 1.21890 1.01159 0.99534 0.97431 1.21988 0.96109 1.02714 0.99227 0.88619 0.93635 0.93080 0.93346 0.91697 0.95697 0.89442 0.94824 0.90464 0.94042 0.94057 0.93155 0.91754 0.93918 0.91943 0.92647 0.92306 0.92790 0.94706 0.94330 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.44 10.09 -148.98 -1.50 -10.94 16 3 C 0.07 1.48 5.20 71.98 0.37 1.85 16 4 C -0.07 -1.85 2.01 -10.79 -0.02 -1.87 16 5 H 0.06 1.80 7.21 -2.38 -0.02 1.79 16 6 C 0.06 1.61 3.61 86.30 0.31 1.93 16 7 N -0.51 -17.83 1.95 -885.53 -1.73 -19.55 16 8 C 0.05 1.94 5.56 86.78 0.48 2.43 16 9 C -0.10 -4.60 5.94 31.98 0.19 -4.41 16 10 C 0.03 1.28 2.78 -10.36 -0.03 1.25 16 11 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 12 C -0.53 -28.97 8.47 25.60 0.22 -28.76 16 13 H 0.06 3.06 7.53 -2.92 -0.02 3.03 16 14 C 0.01 0.64 5.36 84.65 0.45 1.10 16 15 N -0.92 -54.02 12.48 21.45 0.27 -53.75 16 16 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 C 0.06 2.40 6.45 86.65 0.56 2.96 16 21 C -0.07 -1.73 2.64 -10.79 -0.03 -1.76 16 22 C -0.14 -3.13 8.33 71.98 0.60 -2.53 16 23 C -0.14 -4.03 8.12 71.98 0.58 -3.45 16 24 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.23 6.35 -2.38 -0.02 1.22 16 29 H 0.02 0.74 7.84 -2.39 -0.02 0.72 16 30 H 0.09 2.29 5.95 -2.39 -0.01 2.28 16 31 H 0.03 1.25 7.62 -2.39 -0.02 1.23 16 32 H 0.08 2.71 7.16 -2.39 -0.02 2.69 16 33 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 34 H 0.04 2.13 7.76 -2.39 -0.02 2.11 16 35 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.06 2.70 7.63 -2.38 -0.02 2.68 16 37 H 0.04 1.63 7.55 -2.39 -0.02 1.61 16 38 H 0.06 1.59 7.62 -2.39 -0.02 1.57 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.12 6.31 -2.39 -0.02 1.11 16 41 H 0.05 1.28 6.52 -2.39 -0.02 1.27 16 42 H 0.03 1.03 7.15 -2.39 -0.02 1.01 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 2.59 5.85 -2.39 -0.01 2.57 16 Total: -1.00 -60.02 330.25 4.94 -55.08 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.94 Total: 12.87 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.94 Total: -29.61 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.46 Total: -73.30 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.50 Total: -10.94 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -60.02 4.94 -55.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721746142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.522 kcal (2) G-P(sol) polarization free energy of solvation -60.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds