Wall clock time and date at job start Mon Mar 30 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00255 * 2 1 4 4 C 1.52999 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47787 * 52.83583 * 4 3 2 6 6 C 1.53000 * 109.46600 * 172.83734 * 4 3 2 7 7 N 1.46907 * 109.47008 * 183.43390 * 6 4 3 8 8 C 1.47843 * 110.99799 * 69.15469 * 7 6 4 9 9 C 1.54905 * 104.79880 * 146.36752 * 8 7 6 10 10 C 1.55148 * 101.65068 * 322.92919 * 9 8 7 11 11 H 1.09008 * 110.85254 * 277.20277 * 10 9 8 12 12 C 1.50693 * 110.70590 * 154.03698 * 10 9 8 13 13 H 1.07999 * 119.99870 * 246.39803 * 12 10 9 14 14 C 1.37876 * 120.00514 * 66.40066 * 12 10 9 15 15 N 1.31518 * 119.99674 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00551 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47134 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.46548 * 60.00009 * 16 14 12 19 19 H 1.48493 * 109.47018 * 300.00235 * 16 14 12 20 20 C 1.47440 * 111.00228 * 189.99398 * 7 6 4 21 21 C 1.52999 * 109.46852 * 292.83169 * 4 3 2 22 22 C 1.53002 * 109.47394 * 305.46903 * 21 4 3 23 23 C 1.53001 * 109.47191 * 65.47260 * 21 4 3 24 24 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46395 * 299.99659 * 1 2 3 26 26 H 1.08993 * 109.47308 * 59.99778 * 1 2 3 27 27 H 1.08998 * 109.46774 * 60.00148 * 3 2 1 28 28 H 1.09001 * 109.46953 * 300.00366 * 3 2 1 29 29 H 1.08997 * 109.47740 * 63.43967 * 6 4 3 30 30 H 1.08999 * 109.47412 * 303.43084 * 6 4 3 31 31 H 1.08998 * 110.37491 * 265.19430 * 8 7 6 32 32 H 1.09005 * 110.37550 * 27.53637 * 8 7 6 33 33 H 1.09005 * 110.99492 * 204.84307 * 9 8 7 34 34 H 1.09001 * 110.99237 * 81.01776 * 9 8 7 35 35 H 0.96997 * 120.00002 * 359.97438 * 15 14 12 36 36 H 1.09006 * 109.88669 * 117.33580 * 20 7 6 37 37 H 1.08997 * 109.88860 * 356.15178 * 20 7 6 38 38 H 1.09010 * 109.46817 * 185.47198 * 21 4 3 39 39 H 1.09001 * 109.47375 * 302.74715 * 22 21 4 40 40 H 1.08999 * 109.46980 * 62.74607 * 22 21 4 41 41 H 1.09000 * 109.47450 * 182.74453 * 22 21 4 42 42 H 1.08999 * 109.46573 * 50.61726 * 23 21 4 43 43 H 1.08997 * 109.47124 * 170.61643 * 23 21 4 44 44 H 1.08998 * 109.46931 * 290.61890 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8484 0.5372 -0.8198 6 6 4.1568 2.5712 -0.1805 7 7 5.6181 2.4459 -0.2636 8 6 6.0225 1.7852 -1.5228 9 6 7.3705 2.4475 -1.9019 10 6 7.1303 3.9176 -1.4681 11 1 6.5901 4.4665 -2.2395 12 6 8.4358 4.5986 -1.1476 13 1 8.6502 4.9059 -0.1347 14 6 9.3567 4.8295 -2.1474 15 7 9.0955 4.4558 -3.3810 16 14 10.9747 5.6744 -1.7503 17 1 11.7827 5.8039 -2.9894 18 1 11.7227 4.8673 -0.7530 19 1 10.7046 7.0239 -1.1927 20 6 6.2664 3.7685 -0.1982 21 6 4.0001 0.5861 1.3285 22 6 3.4456 1.4202 2.4851 23 6 3.4904 -0.8517 1.4464 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8939 3.2003 0.6699 30 1 3.7782 3.0228 -1.0974 31 1 6.1569 0.7153 -1.3639 32 1 5.2799 1.9639 -2.3006 33 1 7.5499 2.3815 -2.9751 34 1 8.1942 2.0048 -1.3419 35 1 8.2552 4.0175 -3.5874 36 1 6.8973 3.8288 0.6887 37 1 5.5090 4.5518 -0.1709 38 1 5.0895 0.5897 1.3676 39 1 3.7689 2.4553 2.3743 40 1 2.3565 1.3767 2.4750 41 1 3.8163 1.0230 3.4301 42 1 3.7449 -1.4027 0.5410 43 1 3.9551 -1.3325 2.3071 44 1 2.4080 -0.8440 1.5749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721746143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:25 Heat of formation + Delta-G solvation = -63.477875 kcal Electronic energy + Delta-G solvation = -20136.538922 eV Core-core repulsion = 17281.141871 eV Total energy + Delta-G solvation = -2855.397052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.28299 -37.88043 -35.89462 -33.30182 -30.99943 -29.10930 -28.31286 -27.16159 -26.60540 -24.65142 -23.62710 -22.54947 -20.26993 -19.78426 -18.66804 -16.90182 -16.58332 -16.46810 -15.29877 -15.08055 -14.60637 -14.18624 -13.99164 -13.73521 -13.31198 -12.94707 -12.64534 -12.44536 -12.10196 -12.03110 -11.88672 -11.75000 -11.48760 -11.31348 -11.11224 -10.91923 -10.75319 -10.40215 -10.26800 -10.23666 -10.09227 -10.04806 -9.75041 -9.57154 -9.55911 -8.48252 -8.33470 -7.66237 -6.32671 -4.04228 3.45121 3.46703 3.63094 3.65310 4.54247 4.63302 4.84100 5.01434 5.07845 5.15978 5.18143 5.37550 5.39817 5.43448 5.46363 5.49047 5.63812 5.66197 5.74721 5.79587 5.87720 5.98417 6.06250 6.10359 6.13571 6.20689 6.21903 6.33887 6.40769 6.46487 6.59020 6.72314 6.78174 6.94385 6.99926 7.08669 7.26628 7.43290 7.71906 7.78738 8.24707 8.44692 8.89430 9.67413 11.05479 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.042423 B = 0.004234 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.863919 B = 6612.210214 C = 6801.957697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.379 6.379 3 C 0.062 3.938 4 C -0.075 4.075 5 H 0.077 0.923 6 C 0.057 3.943 7 N -0.525 5.525 8 C 0.041 3.959 9 C -0.119 4.119 10 C 0.018 3.982 11 H 0.019 0.981 12 C -0.590 4.590 13 H 0.050 0.950 14 C 0.019 3.981 15 N -0.913 5.913 16 Si 1.067 2.933 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.056 3.944 21 C -0.081 4.081 22 C -0.146 4.146 23 C -0.142 4.142 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.270 0.730 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.039 0.961 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.107 -7.521 7.662 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C -0.015 4.015 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.072 4.072 7 N -0.250 5.250 8 C -0.087 4.087 9 C -0.158 4.158 10 C -0.001 4.001 11 H 0.037 0.963 12 C -0.628 4.628 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.549 5.549 16 Si 0.896 3.104 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.071 4.071 21 C -0.099 4.099 22 C -0.204 4.204 23 C -0.199 4.199 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.423 -7.443 7.418 17.047 hybrid contribution -2.047 0.227 -0.071 2.061 sum -15.471 -7.216 7.346 18.585 Atomic orbital electron populations 1.22708 0.82051 1.02378 0.99700 1.87992 1.18762 1.27957 1.95111 1.22666 0.94319 0.84554 0.99920 1.21174 0.91571 0.97356 0.99333 0.90477 1.22232 0.89577 0.95419 0.99969 1.63544 1.05268 1.20749 1.35390 1.23087 0.97709 0.98366 0.89536 1.22869 0.94530 0.98283 1.00103 1.19967 0.95610 0.92360 0.92158 0.96251 1.21897 1.02181 1.41943 0.96783 0.93147 1.25792 1.03138 0.96312 0.93245 1.70804 1.26558 1.37972 1.19610 0.83563 0.75299 0.76012 0.75544 1.20868 1.21418 1.21534 1.22859 0.96203 0.87007 1.01013 1.20954 1.01517 0.94409 0.93039 1.21920 1.00017 1.00308 0.98111 1.21912 1.01847 0.95804 1.00386 0.89922 0.94382 0.94395 0.92823 0.93900 0.91053 0.95388 0.91797 0.95013 0.92289 0.91733 0.91818 0.91040 0.94938 0.89626 0.92538 0.93351 0.93203 0.93273 0.94141 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.46 7.58 -35.23 -0.27 -4.72 16 3 C 0.06 0.73 4.99 37.16 0.19 0.91 16 4 C -0.08 -1.02 1.96 -90.62 -0.18 -1.20 16 5 H 0.08 1.15 7.37 -51.93 -0.38 0.77 16 6 C 0.06 0.87 3.81 -3.82 -0.01 0.86 16 7 N -0.53 -9.73 4.46 -231.25 -1.03 -10.76 16 8 C 0.04 0.78 5.73 -2.30 -0.01 0.77 16 9 C -0.12 -2.75 5.86 -24.59 -0.14 -2.90 16 10 C 0.02 0.46 2.43 -89.95 -0.22 0.24 16 11 H 0.02 0.52 7.92 -51.92 -0.41 0.11 16 12 C -0.59 -16.46 8.47 -34.44 -0.29 -16.75 16 13 H 0.05 1.40 7.53 -52.49 -0.40 1.01 16 14 C 0.02 0.55 5.36 -17.82 -0.10 0.45 16 15 N -0.91 -27.33 13.49 55.43 0.75 -26.58 16 16 Si 1.07 25.14 29.90 -169.99 -5.08 20.06 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.06 1.19 6.45 -2.84 -0.02 1.18 16 21 C -0.08 -1.07 2.63 -90.62 -0.24 -1.31 16 22 C -0.15 -1.74 8.42 37.16 0.31 -1.43 16 23 C -0.14 -1.76 8.24 37.16 0.31 -1.45 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.58 6.00 -51.93 -0.31 0.27 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.04 6.26 -51.93 -0.33 0.71 16 30 H 0.03 0.44 7.85 -51.93 -0.41 0.04 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.03 0.59 7.62 -51.93 -0.40 0.19 16 33 H 0.06 1.42 6.77 -51.93 -0.35 1.07 16 34 H 0.06 1.58 8.04 -51.93 -0.42 1.16 16 35 H 0.27 8.00 5.59 -40.82 -0.23 7.77 16 36 H 0.07 1.59 7.63 -51.93 -0.40 1.19 16 37 H 0.03 0.65 7.55 -51.93 -0.39 0.26 16 38 H 0.09 1.32 7.55 -51.92 -0.39 0.92 16 39 H 0.06 0.70 6.39 -51.93 -0.33 0.37 16 40 H 0.05 0.53 6.35 -51.93 -0.33 0.20 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.82 6.01 -51.93 -0.31 0.51 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -29.27 329.61 -7.92 -37.18 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.95 Total: -0.88 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 0.70 Total: -19.27 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.28 Total: -37.34 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.27 Total: -4.72 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.27 -7.92 -37.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721746143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.295 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds