Wall clock time and date at job start Mon Mar 30 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00255 * 2 1 4 4 C 1.52999 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47787 * 52.83583 * 4 3 2 6 6 C 1.53000 * 109.46600 * 172.83734 * 4 3 2 7 7 N 1.46907 * 109.47008 * 183.43390 * 6 4 3 8 8 C 1.47843 * 110.99799 * 69.15469 * 7 6 4 9 9 C 1.54905 * 104.79880 * 146.36752 * 8 7 6 10 10 C 1.55148 * 101.65068 * 322.92919 * 9 8 7 11 11 H 1.09008 * 110.85254 * 277.20277 * 10 9 8 12 12 C 1.50693 * 110.70590 * 154.03698 * 10 9 8 13 13 H 1.07999 * 119.99870 * 246.39803 * 12 10 9 14 14 C 1.37876 * 120.00514 * 66.40066 * 12 10 9 15 15 N 1.31518 * 119.99674 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00551 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47134 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.46548 * 60.00009 * 16 14 12 19 19 H 1.48493 * 109.47018 * 300.00235 * 16 14 12 20 20 C 1.47440 * 111.00228 * 189.99398 * 7 6 4 21 21 C 1.52999 * 109.46852 * 292.83169 * 4 3 2 22 22 C 1.53002 * 109.47394 * 305.46903 * 21 4 3 23 23 C 1.53001 * 109.47191 * 65.47260 * 21 4 3 24 24 H 1.09000 * 109.47047 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46395 * 299.99659 * 1 2 3 26 26 H 1.08993 * 109.47308 * 59.99778 * 1 2 3 27 27 H 1.08998 * 109.46774 * 60.00148 * 3 2 1 28 28 H 1.09001 * 109.46953 * 300.00366 * 3 2 1 29 29 H 1.08997 * 109.47740 * 63.43967 * 6 4 3 30 30 H 1.08999 * 109.47412 * 303.43084 * 6 4 3 31 31 H 1.08998 * 110.37491 * 265.19430 * 8 7 6 32 32 H 1.09005 * 110.37550 * 27.53637 * 8 7 6 33 33 H 1.09005 * 110.99492 * 204.84307 * 9 8 7 34 34 H 1.09001 * 110.99237 * 81.01776 * 9 8 7 35 35 H 0.96997 * 120.00002 * 359.97438 * 15 14 12 36 36 H 1.09006 * 109.88669 * 117.33580 * 20 7 6 37 37 H 1.08997 * 109.88860 * 356.15178 * 20 7 6 38 38 H 1.09010 * 109.46817 * 185.47198 * 21 4 3 39 39 H 1.09001 * 109.47375 * 302.74715 * 22 21 4 40 40 H 1.08999 * 109.46980 * 62.74607 * 22 21 4 41 41 H 1.09000 * 109.47450 * 182.74453 * 22 21 4 42 42 H 1.08999 * 109.46573 * 50.61726 * 23 21 4 43 43 H 1.08997 * 109.47124 * 170.61643 * 23 21 4 44 44 H 1.08998 * 109.46931 * 290.61890 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8484 0.5372 -0.8198 6 6 4.1568 2.5712 -0.1805 7 7 5.6181 2.4459 -0.2636 8 6 6.0225 1.7852 -1.5228 9 6 7.3705 2.4475 -1.9019 10 6 7.1303 3.9176 -1.4681 11 1 6.5901 4.4665 -2.2395 12 6 8.4358 4.5986 -1.1476 13 1 8.6502 4.9059 -0.1347 14 6 9.3567 4.8295 -2.1474 15 7 9.0955 4.4558 -3.3810 16 14 10.9747 5.6744 -1.7503 17 1 11.7827 5.8039 -2.9894 18 1 11.7227 4.8673 -0.7530 19 1 10.7046 7.0239 -1.1927 20 6 6.2664 3.7685 -0.1982 21 6 4.0001 0.5861 1.3285 22 6 3.4456 1.4202 2.4851 23 6 3.4904 -0.8517 1.4464 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8939 3.2003 0.6699 30 1 3.7782 3.0228 -1.0974 31 1 6.1569 0.7153 -1.3639 32 1 5.2799 1.9639 -2.3006 33 1 7.5499 2.3815 -2.9751 34 1 8.1942 2.0048 -1.3419 35 1 8.2552 4.0175 -3.5874 36 1 6.8973 3.8288 0.6887 37 1 5.5090 4.5518 -0.1709 38 1 5.0895 0.5897 1.3676 39 1 3.7689 2.4553 2.3743 40 1 2.3565 1.3767 2.4750 41 1 3.8163 1.0230 3.4301 42 1 3.7449 -1.4027 0.5410 43 1 3.9551 -1.3325 2.3071 44 1 2.4080 -0.8440 1.5749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721746143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:24 Heat of formation + Delta-G solvation = -80.512700 kcal Electronic energy + Delta-G solvation = -20137.277608 eV Core-core repulsion = 17281.141871 eV Total energy + Delta-G solvation = -2856.135737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54635 -39.17668 -37.01479 -35.19692 -32.50145 -30.42433 -30.10455 -28.11627 -27.55080 -26.20779 -25.22124 -23.70360 -21.88746 -21.64779 -19.77488 -18.99626 -17.52582 -17.44209 -16.67474 -16.45148 -15.76564 -15.61576 -15.45802 -15.01377 -14.54247 -14.37352 -14.32358 -13.86930 -13.49143 -13.25439 -13.22888 -12.77380 -12.73434 -12.66021 -12.52152 -12.42382 -12.16318 -12.01111 -11.93381 -11.70446 -11.55030 -11.34251 -11.25745 -11.05538 -10.57666 -10.47878 -10.40775 -9.21284 -8.59185 -6.31549 1.53988 1.61648 1.80698 2.58091 2.70252 3.20162 3.24739 3.78500 3.92586 3.99080 4.08220 4.18202 4.29064 4.38690 4.41570 4.46962 4.49090 4.53412 4.61176 4.62954 4.64415 4.67430 4.76342 4.82234 4.89228 4.93126 5.02503 5.05092 5.16358 5.16931 5.19240 5.29331 5.35178 5.42808 5.50089 5.59688 5.75017 6.01888 6.11382 6.19063 6.23479 6.32688 6.65446 7.48234 8.79634 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.042423 B = 0.004234 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.863919 B = 6612.210214 C = 6801.957697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.067 3.933 4 C -0.069 4.069 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.523 5.523 8 C 0.054 3.946 9 C -0.112 4.112 10 C 0.008 3.992 11 H -0.006 1.006 12 C -0.604 4.604 13 H 0.047 0.953 14 C -0.030 4.030 15 N -0.938 5.938 16 Si 1.113 2.887 17 H -0.286 1.286 18 H -0.272 1.272 19 H -0.271 1.271 20 C 0.068 3.932 21 C -0.080 4.080 22 C -0.142 4.142 23 C -0.135 4.135 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.260 0.740 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 -7.799 9.033 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C -0.009 4.009 4 C -0.088 4.088 5 H 0.080 0.920 6 C -0.071 4.071 7 N -0.247 5.247 8 C -0.073 4.073 9 C -0.151 4.151 10 C -0.012 4.012 11 H 0.012 0.988 12 C -0.642 4.642 13 H 0.066 0.934 14 C -0.229 4.229 15 N -0.576 5.576 16 Si 0.935 3.065 17 H -0.211 1.211 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.059 4.059 21 C -0.098 4.098 22 C -0.199 4.199 23 C -0.192 4.192 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.745 -7.734 8.805 18.835 hybrid contribution -1.716 0.287 -0.497 1.809 sum -16.461 -7.447 8.308 19.886 Atomic orbital electron populations 1.22896 0.80315 1.03577 1.00554 1.87951 1.20626 1.27777 1.95269 1.22547 0.92725 0.84942 1.00723 1.21063 0.93144 0.95619 0.98994 0.91958 1.22313 0.87274 0.97058 1.00427 1.63539 1.07454 1.18954 1.34754 1.22961 0.95421 0.98895 0.90035 1.22658 0.96236 0.97556 0.98653 1.19976 0.95078 0.92797 0.93326 0.98811 1.22276 1.03421 1.41860 0.96661 0.93429 1.27205 1.06423 0.96451 0.92782 1.70915 1.26443 1.39532 1.20663 0.82974 0.71722 0.76119 0.75653 1.21120 1.19738 1.19631 1.22620 0.96005 0.88860 0.98456 1.20906 1.00090 0.95336 0.93474 1.21875 1.00823 0.99544 0.97659 1.21833 1.02170 0.95027 1.00165 0.88654 0.93188 0.93850 0.91531 0.93586 0.89767 0.95545 0.90156 0.94253 0.94005 0.93551 0.92946 0.92000 0.93789 0.92023 0.93158 0.91966 0.92677 0.94245 0.93529 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.57 16 2 O -0.40 -8.35 7.58 -148.98 -1.13 -9.48 16 3 C 0.07 1.41 4.99 71.98 0.36 1.77 16 4 C -0.07 -1.75 1.96 -10.79 -0.02 -1.77 16 5 H 0.06 1.77 7.37 -2.39 -0.02 1.75 16 6 C 0.06 1.67 3.81 86.30 0.33 2.00 16 7 N -0.52 -18.94 4.46 -885.55 -3.95 -22.89 16 8 C 0.05 2.07 5.73 86.77 0.50 2.57 16 9 C -0.11 -5.31 5.86 31.98 0.19 -5.13 16 10 C 0.01 0.39 2.43 -10.36 -0.03 0.36 16 11 H -0.01 -0.35 7.92 -2.38 -0.02 -0.36 16 12 C -0.60 -34.23 8.47 25.60 0.22 -34.02 16 13 H 0.05 2.66 7.53 -2.91 -0.02 2.64 16 14 C -0.03 -1.74 5.36 84.65 0.45 -1.29 16 15 N -0.94 -57.38 13.49 21.45 0.29 -57.09 16 16 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 C 0.07 2.88 6.45 86.65 0.56 3.44 16 21 C -0.08 -1.97 2.63 -10.79 -0.03 -1.99 16 22 C -0.14 -3.03 8.42 71.98 0.61 -2.42 16 23 C -0.13 -3.08 8.24 71.98 0.59 -2.49 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 1.22 6.00 -2.39 -0.01 1.21 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 2.26 6.26 -2.39 -0.01 2.25 16 30 H 0.03 0.79 7.85 -2.39 -0.02 0.77 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.04 1.44 7.62 -2.38 -0.02 1.42 16 33 H 0.04 2.08 6.77 -2.38 -0.02 2.07 16 34 H 0.05 2.32 8.04 -2.39 -0.02 2.30 16 35 H 0.26 15.96 5.59 -92.71 -0.52 15.44 16 36 H 0.06 2.73 7.63 -2.38 -0.02 2.71 16 37 H 0.04 1.73 7.55 -2.39 -0.02 1.72 16 38 H 0.06 1.83 7.55 -2.38 -0.02 1.81 16 39 H 0.05 1.13 6.39 -2.39 -0.02 1.12 16 40 H 0.06 1.15 6.35 -2.39 -0.02 1.14 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.60 6.01 -2.39 -0.01 1.58 16 Total: -1.00 -63.09 329.61 3.43 -59.67 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.19 Total: 14.61 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 4.97 Total: -37.40 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -3.66 Total: -79.98 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.13 Total: -9.48 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -63.09 3.43 -59.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721746143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.845 kcal (2) G-P(sol) polarization free energy of solvation -63.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds