Wall clock time and date at job start Mon Mar 30 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00239 * 2 1 4 4 C 1.52996 * 109.47610 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47451 * 303.02395 * 4 3 2 6 6 C 1.53001 * 109.47522 * 183.01919 * 4 3 2 7 7 N 1.46902 * 109.46625 * 63.89129 * 6 4 3 8 8 C 1.47886 * 111.01999 * 74.38491 * 7 6 4 9 9 C 1.54901 * 104.77798 * 146.32488 * 8 7 6 10 10 C 1.55143 * 101.69001 * 322.98390 * 9 8 7 11 11 H 1.09001 * 110.70205 * 277.25261 * 10 9 8 12 12 C 1.50692 * 110.70892 * 154.01731 * 10 9 8 13 13 H 1.08003 * 119.99804 * 266.36256 * 12 10 9 14 14 C 1.37875 * 120.00126 * 86.36468 * 12 10 9 15 15 N 1.31516 * 120.00008 * 185.66404 * 14 12 10 16 16 Si 1.86801 * 120.00115 * 5.66600 * 14 12 10 17 17 H 1.48507 * 109.46775 * 94.50995 * 16 14 12 18 18 H 1.48497 * 109.47441 * 214.50816 * 16 14 12 19 19 H 1.48494 * 109.46847 * 334.51391 * 16 14 12 20 20 C 1.47449 * 110.99637 * 195.25987 * 7 6 4 21 21 C 1.53005 * 109.47043 * 63.02046 * 4 3 2 22 22 C 1.53000 * 109.47170 * 66.00803 * 21 4 3 23 23 C 1.53001 * 109.47182 * 186.01408 * 21 4 3 24 24 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47159 * 299.99746 * 1 2 3 26 26 H 1.08998 * 109.47352 * 60.00071 * 1 2 3 27 27 H 1.09004 * 109.46685 * 60.00128 * 3 2 1 28 28 H 1.08996 * 109.47437 * 300.00622 * 3 2 1 29 29 H 1.08994 * 109.46757 * 303.89311 * 6 4 3 30 30 H 1.09000 * 109.47327 * 183.88994 * 6 4 3 31 31 H 1.09001 * 110.35193 * 27.51498 * 8 7 6 32 32 H 1.08997 * 110.41060 * 265.16267 * 8 7 6 33 33 H 1.08997 * 110.99198 * 204.86901 * 9 8 7 34 34 H 1.08998 * 110.98940 * 81.09298 * 9 8 7 35 35 H 0.97001 * 119.99935 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.88983 * 117.33569 * 20 7 6 37 37 H 1.09005 * 109.88539 * 356.14835 * 20 7 6 38 38 H 1.09008 * 109.46647 * 306.01334 * 21 4 3 39 39 H 1.09000 * 109.46586 * 64.12929 * 22 21 4 40 40 H 1.08996 * 109.46808 * 184.12343 * 22 21 4 41 41 H 1.09001 * 109.47404 * 304.13114 * 22 21 4 42 42 H 1.09001 * 109.47243 * 62.78289 * 23 21 4 43 43 H 1.09004 * 109.46449 * 182.78292 * 23 21 4 44 44 H 1.08998 * 109.46978 * 302.78503 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8531 0.5978 0.8625 6 6 4.1576 2.5804 0.0766 7 7 3.7941 3.2095 1.3534 8 6 4.5581 2.6178 2.4728 9 6 4.7823 3.7893 3.4611 10 6 5.0090 4.9793 2.4918 11 1 6.0437 5.0061 2.1500 12 6 4.6292 6.2813 3.1485 13 1 3.6358 6.6836 3.0155 14 6 5.5500 6.9591 3.9190 15 7 5.1874 8.0354 4.5821 16 14 7.3125 6.3487 4.0212 17 1 8.1421 7.0613 3.0165 18 1 7.8489 6.6100 5.3810 19 1 7.3476 4.8897 3.7470 20 6 4.0558 4.6603 1.3209 21 6 3.9927 0.4918 -1.2846 22 6 3.6799 1.3867 -2.4855 23 6 5.4997 0.2361 -1.2178 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.7857 3.1892 -0.7474 30 1 5.2423 2.4989 0.0075 31 1 5.5140 2.2327 2.1177 32 1 3.9818 1.8246 2.9490 33 1 5.6632 3.6158 4.0790 34 1 3.8999 3.9524 4.0798 35 1 5.8353 8.5125 5.1239 36 1 3.1217 5.2084 1.4433 37 1 4.5261 4.9311 0.3755 38 1 3.4676 -0.4574 -1.3922 39 1 4.2615 2.3058 -2.4149 40 1 3.9382 0.8630 -3.4059 41 1 2.6171 1.6288 -2.4912 42 1 5.7171 -0.4412 -0.3919 43 1 5.8339 -0.2125 -2.1533 44 1 6.0217 1.1800 -1.0605 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721746145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:27 Heat of formation + Delta-G solvation = -79.761225 kcal Electronic energy + Delta-G solvation = -20128.233692 eV Core-core repulsion = 17272.130541 eV Total energy + Delta-G solvation = -2856.103151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45319 -38.95430 -37.22508 -34.91973 -32.90544 -30.56280 -30.09353 -28.12408 -27.74183 -26.34861 -25.16208 -23.73453 -21.84509 -21.20515 -19.69119 -19.14359 -17.41785 -17.23898 -16.74385 -16.43421 -15.95075 -15.76673 -15.23812 -14.91285 -14.64712 -14.53442 -14.16062 -14.04820 -13.70093 -13.44265 -13.11543 -12.95319 -12.86122 -12.62088 -12.52757 -12.29847 -12.21327 -11.95043 -11.82959 -11.62844 -11.52914 -11.35766 -11.31144 -11.11502 -11.04681 -10.66743 -10.44915 -9.12233 -8.28760 -6.31278 1.33828 1.35660 1.46976 2.35200 2.92038 3.05762 3.12520 3.86079 3.94732 4.03210 4.12627 4.19380 4.30885 4.40976 4.45299 4.51473 4.54614 4.56806 4.61276 4.72929 4.76321 4.78522 4.82434 4.86009 4.87572 4.88850 5.02286 5.09595 5.11993 5.13434 5.24664 5.26708 5.34544 5.41958 5.47374 5.53206 5.56560 5.72619 6.13146 6.28301 6.33248 6.37178 6.74443 7.33235 8.88218 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028059 B = 0.005019 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.673779 B = 5576.968437 C = 6038.740924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.074 3.926 4 C -0.066 4.066 5 H 0.067 0.933 6 C 0.056 3.944 7 N -0.536 5.536 8 C 0.052 3.948 9 C -0.127 4.127 10 C -0.006 4.006 11 H 0.035 0.965 12 C -0.508 4.508 13 H 0.031 0.969 14 C 0.011 3.989 15 N -0.951 5.951 16 Si 0.941 3.059 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.239 1.239 20 C 0.064 3.936 21 C -0.083 4.083 22 C -0.149 4.149 23 C -0.148 4.148 24 H 0.098 0.902 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.265 0.735 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -17.968 -12.850 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.002 4.002 4 C -0.085 4.085 5 H 0.085 0.915 6 C -0.072 4.072 7 N -0.261 5.261 8 C -0.075 4.075 9 C -0.166 4.166 10 C -0.026 4.026 11 H 0.053 0.947 12 C -0.547 4.547 13 H 0.049 0.951 14 C -0.185 4.185 15 N -0.591 5.591 16 Si 0.765 3.235 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.162 1.162 20 C -0.063 4.063 21 C -0.102 4.102 22 C -0.206 4.206 23 C -0.205 4.205 24 H 0.116 0.884 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.757 -18.085 -12.679 22.258 hybrid contribution 1.123 0.952 0.468 1.545 sum -1.635 -17.134 -12.211 21.103 Atomic orbital electron populations 1.22852 0.80192 1.03498 1.00334 1.87784 1.20793 1.28850 1.95539 1.22483 0.93570 0.83786 1.00338 1.21041 0.93259 0.95371 0.98799 0.91498 1.22458 0.98310 0.94991 0.91441 1.63554 1.55451 1.03111 1.03944 1.23005 0.95998 0.96688 0.91853 1.22923 1.00341 0.95303 0.98020 1.20284 0.95413 0.93452 0.93449 0.94677 1.21203 0.98626 1.05418 1.29421 0.95051 1.25919 1.03397 0.94808 0.94416 1.70071 1.36562 1.20731 1.31759 0.85835 0.79591 0.80652 0.77441 1.19732 1.21370 1.16166 1.22638 0.98463 0.87670 0.97555 1.21020 0.96470 0.99024 0.93689 1.21924 1.01402 0.99686 0.97558 1.21892 0.95117 1.01494 1.02008 0.88364 0.94277 0.93447 0.93502 0.93027 0.90355 0.93572 0.93260 0.90220 0.92463 0.92936 0.92608 0.92815 0.93070 0.90792 0.92644 0.91847 0.92831 0.92912 0.91693 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -10.02 10.06 -148.98 -1.50 -11.52 16 3 C 0.07 1.84 5.10 71.98 0.37 2.21 16 4 C -0.07 -1.56 1.92 -10.79 -0.02 -1.58 16 5 H 0.07 1.73 7.59 -2.38 -0.02 1.71 16 6 C 0.06 1.48 3.27 86.30 0.28 1.76 16 7 N -0.54 -17.84 4.48 -885.43 -3.96 -21.80 16 8 C 0.05 1.72 6.00 86.76 0.52 2.24 16 9 C -0.13 -5.21 6.24 31.98 0.20 -5.01 16 10 C -0.01 -0.28 2.24 -10.36 -0.02 -0.31 16 11 H 0.04 1.58 5.93 -2.39 -0.01 1.57 16 12 C -0.51 -28.86 8.92 25.60 0.23 -28.63 16 13 H 0.03 1.99 7.78 -2.91 -0.02 1.97 16 14 C 0.01 0.66 5.47 84.65 0.46 1.12 16 15 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 16 Si 0.94 43.65 26.94 68.60 1.85 45.50 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.24 -10.07 5.66 99.48 0.56 -9.51 16 20 C 0.06 2.54 6.43 86.64 0.56 3.10 16 21 C -0.08 -1.65 2.64 -10.79 -0.03 -1.67 16 22 C -0.15 -2.66 8.40 71.98 0.60 -2.06 16 23 C -0.15 -2.68 9.03 71.98 0.65 -2.03 16 24 H 0.10 1.41 8.14 -2.38 -0.02 1.40 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 1.33 7.63 -2.38 -0.02 1.32 16 28 H 0.05 1.19 6.39 -2.39 -0.02 1.18 16 29 H 0.08 1.99 6.40 -2.39 -0.02 1.98 16 30 H 0.05 1.21 5.93 -2.39 -0.01 1.19 16 31 H 0.05 1.50 7.54 -2.39 -0.02 1.48 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.28 7.07 -2.39 -0.02 2.26 16 34 H 0.05 2.32 8.04 -2.39 -0.02 2.30 16 35 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 36 H 0.05 2.34 7.63 -2.39 -0.02 2.32 16 37 H 0.05 1.85 7.47 -2.38 -0.02 1.84 16 38 H 0.07 1.55 7.60 -2.38 -0.02 1.53 16 39 H 0.05 1.01 6.68 -2.39 -0.02 0.99 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.98 6.36 -2.39 -0.02 0.96 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.05 1.00 6.40 -2.39 -0.02 0.98 16 Total: -1.00 -63.81 329.70 2.53 -61.28 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.80 Total: 14.88 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 5.05 Total: -29.12 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.66 Total: -81.02 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.50 Total: -11.52 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.85 Total: 45.50 kcal Total: -63.81 2.53 -61.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721746145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.485 kcal (2) G-P(sol) polarization free energy of solvation -63.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds