Wall clock time and date at job start Mon Mar 30 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47161 * 2 1 4 4 O 1.42894 * 109.46797 * 239.99643 * 2 1 3 5 5 C 1.53003 * 109.46703 * 119.99798 * 2 1 3 6 6 H 1.08997 * 110.88078 * 305.84396 * 5 2 1 7 7 C 1.55143 * 110.98639 * 181.99936 * 5 2 1 8 8 C 1.54315 * 103.01949 * 206.21779 * 7 5 2 9 9 N 1.47438 * 107.23473 * 22.28415 * 8 7 5 10 10 C 1.46908 * 111.00048 * 123.25634 * 9 8 7 11 11 C 1.53000 * 109.46884 * 69.16157 * 10 9 8 12 12 C 1.53003 * 109.46933 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.46836 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47135 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99701 * 359.97438 * 14 13 12 16 16 C 1.37868 * 120.00201 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47223 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47180 * 119.99845 * 18 16 14 21 21 H 1.48502 * 109.47183 * 239.99739 * 18 16 14 22 22 C 1.47844 * 108.56503 * 0.99175 * 9 8 7 23 23 H 1.09007 * 109.46624 * 300.00022 * 1 2 3 24 24 H 1.08999 * 109.46653 * 59.99838 * 1 2 3 25 25 H 1.08997 * 109.47064 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46957 * 185.47911 * 3 2 1 27 27 H 1.09000 * 109.46848 * 305.47567 * 3 2 1 28 28 H 1.09002 * 109.47339 * 65.47423 * 3 2 1 29 29 H 0.96706 * 113.99745 * 180.02562 * 4 2 1 30 30 H 1.08996 * 110.71042 * 324.60626 * 7 5 2 31 31 H 1.09002 * 110.70656 * 87.83583 * 7 5 2 32 32 H 1.09004 * 109.89004 * 141.69338 * 8 7 5 33 33 H 1.09009 * 109.89022 * 262.87849 * 8 7 5 34 34 H 1.08998 * 109.46824 * 189.16176 * 10 9 8 35 35 H 1.09000 * 109.46726 * 309.15738 * 10 9 8 36 36 H 1.09002 * 109.46921 * 299.99617 * 11 10 9 37 37 H 1.08999 * 109.47057 * 60.00058 * 11 10 9 38 38 H 1.08998 * 109.46761 * 300.00011 * 12 11 10 39 39 H 1.09005 * 109.46848 * 59.99999 * 12 11 10 40 40 H 1.08998 * 109.47654 * 299.99708 * 13 12 11 41 41 H 1.09000 * 109.47630 * 60.00333 * 13 12 11 42 42 H 0.97001 * 120.00257 * 180.02562 * 17 16 14 43 43 H 1.09009 * 110.37214 * 217.07267 * 22 9 8 44 44 H 1.09001 * 110.47365 * 94.78159 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.6072 -0.2888 2.1514 7 6 3.5900 -0.6982 1.3105 8 6 3.9237 -1.9527 2.1448 9 7 2.7691 -2.8641 2.0442 10 6 3.1777 -4.1762 1.5250 11 6 4.0323 -4.8949 2.5710 12 6 4.4584 -6.2612 2.0299 13 6 5.3134 -6.9796 3.0756 14 6 5.7337 -8.3252 2.5425 15 1 5.4216 -8.6368 1.5566 16 6 6.5155 -9.1586 3.3137 17 7 6.8951 -8.7794 4.5145 18 14 7.0358 -10.8267 2.6532 19 1 6.4825 -11.0130 1.2878 20 1 8.5182 -10.8976 2.5999 21 1 6.5209 -11.8954 3.5466 22 6 1.7527 -2.2413 1.1697 23 1 -0.3633 0.5139 0.8901 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1257 1.4440 -0.0981 27 1 1.5989 1.9838 -0.8369 28 1 1.7590 1.9273 0.9349 29 1 2.9704 -0.7122 -1.2326 30 1 4.0164 -0.7758 0.3104 31 1 3.9426 0.2031 1.8119 32 1 4.8147 -2.4375 1.7455 33 1 4.0861 -1.6733 3.1859 34 1 2.2917 -4.7727 1.3074 35 1 3.7579 -4.0410 0.6122 36 1 4.9182 -4.2983 2.7885 37 1 3.4520 -5.0300 3.4837 38 1 3.5726 -6.8579 1.8120 39 1 5.0388 -6.1256 1.1173 40 1 6.1991 -6.3827 3.2931 41 1 4.7334 -7.1152 3.9885 42 1 7.4455 -9.3657 5.0570 43 1 0.7502 -2.4579 1.5390 44 1 1.8633 -2.5952 0.1447 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721875013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:26 Heat of formation + Delta-G solvation = -79.463746 kcal Electronic energy + Delta-G solvation = -19272.326269 eV Core-core repulsion = 16416.236018 eV Total energy + Delta-G solvation = -2856.090251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09298 -37.46058 -34.76102 -33.12877 -32.29119 -30.70241 -29.11817 -27.61553 -27.42552 -24.53162 -22.35044 -22.08944 -20.39098 -20.11224 -19.63844 -17.17451 -16.36010 -16.16251 -15.58998 -15.01511 -14.58279 -14.43955 -13.99587 -13.67834 -13.51213 -13.09844 -12.84091 -12.54146 -12.42237 -12.33983 -12.18740 -11.82242 -11.74081 -11.49996 -11.39303 -11.16641 -10.95716 -10.81523 -10.67653 -10.45479 -10.43268 -10.33400 -10.10243 -9.57906 -9.21480 -8.95266 -8.30291 -8.19917 -5.95150 -3.97199 3.33580 3.40767 3.45314 3.87608 3.98330 4.26906 4.47870 4.50543 4.57388 4.72589 4.88700 5.01560 5.23494 5.28389 5.32514 5.40048 5.41689 5.43843 5.53496 5.56012 5.59188 5.66948 5.68063 5.80280 5.86263 5.93547 5.96820 6.03173 6.10837 6.21561 6.31027 6.57298 6.86854 7.02670 7.08552 7.15022 7.31148 7.37009 7.74759 7.90850 8.06435 8.49381 9.10659 9.66597 11.16257 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.052340 B = 0.003042 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.838597 B = 9203.559630 C = 9353.106513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.135 3.865 3 C -0.177 4.177 4 O -0.557 6.557 5 C -0.123 4.123 6 H 0.090 0.910 7 C -0.138 4.138 8 C 0.042 3.958 9 N -0.531 5.531 10 C 0.053 3.947 11 C -0.112 4.112 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.049 3.951 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.373 0.627 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.075 0.925 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 21.188 -8.144 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.094 3.906 3 C -0.234 4.234 4 O -0.364 6.364 5 C -0.142 4.142 6 H 0.108 0.892 7 C -0.177 4.177 8 C -0.086 4.086 9 N -0.255 5.255 10 C -0.075 4.075 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.079 4.079 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.221 0.779 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.224 20.966 -7.609 24.969 hybrid contribution 1.382 -0.766 -0.872 1.805 sum -9.842 20.200 -8.482 24.018 Atomic orbital electron populations 1.21756 0.92524 1.03062 1.02256 1.21095 0.94824 0.90361 0.84326 1.22485 1.01612 0.96653 1.02657 1.86561 1.26646 1.79477 1.43748 1.23014 0.95872 0.96610 0.98750 0.89162 1.22848 0.95347 0.99235 1.00244 1.22829 0.93516 0.91886 1.00399 1.63616 1.10301 1.03037 1.48526 1.22398 0.99139 0.89438 0.96530 1.21647 0.98376 0.96828 0.98144 1.21602 0.99590 0.93711 0.99854 1.19089 0.94340 0.94492 0.93665 1.21340 1.31145 1.01582 1.01625 0.92731 1.25038 0.96256 0.98355 0.94940 1.69985 1.36988 1.36917 1.09721 0.86559 0.78261 0.84288 0.79035 1.19764 1.21061 1.21021 1.22996 0.96584 0.92046 0.96249 0.91152 0.92005 0.91612 0.92182 0.91943 0.91557 0.77870 0.91886 0.90720 0.92208 0.90571 0.91195 0.95083 0.92751 0.91770 0.93490 0.93769 0.96776 0.96615 0.93131 0.90682 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.72 37.16 0.32 -0.74 16 2 C 0.13 1.09 0.88 -90.62 -0.08 1.01 16 3 C -0.18 -1.17 8.46 37.16 0.31 -0.85 16 4 O -0.56 -5.31 11.76 -35.23 -0.41 -5.72 16 5 C -0.12 -1.10 2.42 -88.48 -0.21 -1.32 16 6 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.14 -1.23 5.23 -24.91 -0.13 -1.36 16 8 C 0.04 0.49 6.20 -2.84 -0.02 0.47 16 9 N -0.53 -7.13 5.16 -231.24 -1.19 -8.33 16 10 C 0.05 0.79 4.54 -3.82 -0.02 0.77 16 11 C -0.11 -2.01 5.23 -26.73 -0.14 -2.15 16 12 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 15 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.05 0.55 5.44 -2.30 -0.01 0.54 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 26 H 0.06 0.37 7.45 -51.93 -0.39 -0.02 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.37 2.72 7.25 45.56 0.33 3.05 16 30 H 0.06 0.51 6.35 -51.93 -0.33 0.18 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.75 6.88 -51.93 -0.36 0.40 16 33 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.03 0.46 7.98 -51.93 -0.41 0.05 16 36 H 0.05 0.98 7.09 -51.93 -0.37 0.61 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.85 8.10 -51.92 -0.42 0.43 16 44 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -31.50 340.12 -9.15 -40.65 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.72 Total: -2.34 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.66 Total: -19.60 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.46 Total: -35.18 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.41 Total: -5.72 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.50 -9.15 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721875013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.810 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds