Wall clock time and date at job start Mon Mar 30 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47547 * 2 1 4 4 O 1.42900 * 109.46991 * 239.99545 * 2 1 3 5 5 C 1.53004 * 109.46923 * 120.00053 * 2 1 3 6 6 H 1.08998 * 110.87782 * 303.83976 * 5 2 1 7 7 C 1.55143 * 111.02253 * 67.71150 * 5 2 1 8 8 C 1.54317 * 103.01847 * 153.75991 * 7 5 2 9 9 N 1.47725 * 107.26912 * 337.72503 * 8 7 5 10 10 C 1.46896 * 111.10061 * 236.76339 * 9 8 7 11 11 C 1.53008 * 109.47140 * 290.72403 * 10 9 8 12 12 C 1.52993 * 109.47133 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47199 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47295 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99966 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99910 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00036 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47293 * 59.99835 * 18 16 14 20 20 H 1.48503 * 109.47198 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47202 * 299.99961 * 18 16 14 22 22 C 1.47846 * 108.41728 * 358.99552 * 9 8 7 23 23 H 1.09003 * 109.46652 * 300.00132 * 1 2 3 24 24 H 1.08994 * 109.47088 * 59.99729 * 1 2 3 25 25 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47563 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47126 * 300.00563 * 3 2 1 28 28 H 1.09005 * 109.47344 * 59.99698 * 3 2 1 29 29 H 0.96698 * 113.99940 * 300.00726 * 4 2 1 30 30 H 1.08996 * 110.70802 * 272.13982 * 7 5 2 31 31 H 1.08997 * 110.70353 * 35.20228 * 7 5 2 32 32 H 1.08999 * 109.89395 * 97.11657 * 8 7 5 33 33 H 1.08999 * 109.88953 * 218.14868 * 8 7 5 34 34 H 1.08995 * 109.47491 * 50.72077 * 10 9 8 35 35 H 1.09002 * 109.47013 * 170.72554 * 10 9 8 36 36 H 1.09003 * 109.46748 * 300.00497 * 11 10 9 37 37 H 1.08992 * 109.47020 * 60.00001 * 11 10 9 38 38 H 1.09003 * 109.47435 * 299.99741 * 12 11 10 39 39 H 1.09002 * 109.47291 * 59.99986 * 12 11 10 40 40 H 1.09003 * 109.47012 * 300.00364 * 13 12 11 41 41 H 1.09002 * 109.46713 * 59.99996 * 13 12 11 42 42 H 0.97009 * 120.00289 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.37456 * 265.23586 * 22 9 8 44 44 H 1.08999 * 110.37254 * 143.00857 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.6347 -0.2664 2.1531 7 6 1.7076 -2.2356 1.1922 8 6 2.8056 -2.8660 2.0745 9 7 3.9339 -1.9134 2.1179 10 6 5.1761 -2.5435 1.6511 11 6 5.6342 -3.5864 2.6726 12 6 6.9283 -4.2421 2.1867 13 6 7.3867 -5.2846 3.2086 14 6 8.6610 -5.9310 2.7297 15 1 9.1003 -5.6282 1.7907 16 6 9.2661 -6.9088 3.4903 17 7 8.7309 -7.2779 4.6335 18 14 10.8461 -7.7095 2.8971 19 1 11.8983 -6.6732 2.7421 20 1 11.2902 -8.7222 3.8882 21 1 10.6054 -8.3701 1.5891 22 6 3.5885 -0.7419 1.2848 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.7209 -1.5953 -1.2328 30 1 0.7195 -2.4294 1.6096 31 1 1.7718 -2.6060 0.1691 32 1 2.4225 -3.0321 3.0814 33 1 3.1321 -3.8114 1.6414 34 1 4.9991 -3.0285 0.6912 35 1 5.9486 -1.7829 1.5370 36 1 5.8112 -3.1014 3.6326 37 1 4.8618 -4.3468 2.7868 38 1 6.7517 -4.7271 1.2267 39 1 7.7006 -3.4814 2.0729 40 1 7.5634 -4.7993 4.1685 41 1 6.6145 -6.0454 3.3228 42 1 9.1568 -7.9656 5.1689 43 1 3.9897 -0.8605 0.2783 44 1 3.9698 0.1725 1.7392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721875015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:28 Heat of formation + Delta-G solvation = -78.537401 kcal Electronic energy + Delta-G solvation = -19268.535957 eV Core-core repulsion = 16412.485875 eV Total energy + Delta-G solvation = -2856.050082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08755 -37.45218 -34.75385 -33.10724 -32.31152 -30.74762 -29.09255 -27.60212 -27.41363 -24.53939 -22.35660 -22.10706 -20.37567 -20.11489 -19.63625 -17.21449 -16.36295 -16.15543 -15.56071 -14.99949 -14.63070 -14.44410 -13.98139 -13.73056 -13.44120 -13.09627 -12.82349 -12.54194 -12.45520 -12.30367 -12.18084 -11.84315 -11.69436 -11.49519 -11.40952 -11.17296 -10.93161 -10.80147 -10.69031 -10.49462 -10.43201 -10.32717 -10.10641 -9.57254 -9.21140 -8.96998 -8.29450 -8.20622 -5.94610 -3.96808 3.36282 3.40260 3.43046 3.88349 3.98133 4.24884 4.47080 4.50483 4.57590 4.72398 4.88931 5.00881 5.24420 5.28876 5.31696 5.40434 5.42393 5.43988 5.52559 5.56531 5.58072 5.65966 5.68262 5.80337 5.86650 5.93809 5.97169 6.02194 6.10301 6.21639 6.31142 6.57494 6.86950 7.02867 7.07522 7.14917 7.31274 7.37288 7.74543 7.91200 8.06805 8.49693 9.10601 9.66796 11.16735 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.052324 B = 0.003040 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.000442 B = 9208.175850 C = 9359.203005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.135 3.865 3 C -0.140 4.140 4 O -0.558 6.558 5 C -0.122 4.122 6 H 0.090 0.910 7 C -0.140 4.140 8 C 0.042 3.958 9 N -0.530 5.530 10 C 0.052 3.948 11 C -0.112 4.112 12 C -0.110 4.110 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.049 3.951 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.373 0.627 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.055 0.945 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 15.144 -8.478 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.094 3.906 3 C -0.197 4.197 4 O -0.366 6.366 5 C -0.142 4.142 6 H 0.108 0.892 7 C -0.178 4.178 8 C -0.086 4.086 9 N -0.254 5.254 10 C -0.075 4.075 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.078 4.078 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.222 0.778 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.654 15.754 -7.918 24.951 hybrid contribution 0.479 -1.393 -0.903 1.727 sum -17.175 14.361 -8.820 24.063 Atomic orbital electron populations 1.22483 0.95748 1.02520 1.02714 1.21094 0.92367 0.92822 0.84323 1.21765 1.02324 0.93308 1.02276 1.86569 1.77344 1.28929 1.43742 1.23000 0.96635 0.95800 0.98747 0.89168 1.22846 0.99796 0.95014 1.00163 1.22855 0.90522 0.95294 0.99888 1.63716 1.03028 1.06914 1.51766 1.22396 0.91073 0.97256 0.96798 1.21643 0.98362 0.96535 0.98439 1.21603 0.94441 0.98766 0.99963 1.19078 0.95731 0.92889 0.93797 1.21266 1.08651 1.20149 1.05809 0.92834 1.25031 0.97573 0.96925 0.94998 1.69963 1.39857 1.31009 1.12791 0.86670 0.83840 0.79127 0.78427 1.20256 1.21305 1.20298 1.23007 0.93752 0.94619 0.96461 0.91528 0.91872 0.92237 0.91549 0.92009 0.91122 0.77809 0.90757 0.91710 0.90561 0.92187 0.95054 0.91197 0.91774 0.92746 0.93764 0.93496 0.96629 0.96788 0.93012 0.92704 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 8.68 37.16 0.32 -0.85 16 2 C 0.13 1.10 0.87 -90.62 -0.08 1.02 16 3 C -0.14 -1.09 8.62 37.15 0.32 -0.77 16 4 O -0.56 -5.36 12.13 -35.23 -0.43 -5.79 16 5 C -0.12 -1.10 2.42 -88.48 -0.21 -1.32 16 6 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.14 -1.25 5.56 -24.91 -0.14 -1.39 16 8 C 0.04 0.50 6.21 -2.68 -0.02 0.49 16 9 N -0.53 -7.16 5.17 -231.01 -1.19 -8.35 16 10 C 0.05 0.79 4.54 -3.82 -0.02 0.78 16 11 C -0.11 -2.01 5.24 -26.73 -0.14 -2.15 16 12 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 18 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.05 0.56 5.00 -2.30 -0.01 0.55 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 26 H 0.07 0.57 7.22 -51.93 -0.37 0.20 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.37 2.72 6.85 45.56 0.31 3.03 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.53 5.94 -51.93 -0.31 0.22 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 34 H 0.03 0.47 7.99 -51.93 -0.41 0.06 16 35 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.98 7.11 -51.93 -0.37 0.61 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.05 0.67 7.07 -51.93 -0.37 0.31 16 44 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -31.55 339.79 -9.17 -40.72 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.72 Total: -2.25 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.66 Total: -19.65 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.46 Total: -35.25 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.43 Total: -5.79 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.55 -9.17 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721875015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.813 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds