Wall clock time and date at job start Mon Mar 30 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47547 * 2 1 4 4 O 1.42900 * 109.46991 * 239.99545 * 2 1 3 5 5 C 1.53004 * 109.46923 * 120.00053 * 2 1 3 6 6 H 1.08998 * 110.87782 * 303.83976 * 5 2 1 7 7 C 1.55143 * 111.02253 * 67.71150 * 5 2 1 8 8 C 1.54317 * 103.01847 * 153.75991 * 7 5 2 9 9 N 1.47725 * 107.26912 * 337.72503 * 8 7 5 10 10 C 1.46896 * 111.10061 * 236.76339 * 9 8 7 11 11 C 1.53008 * 109.47140 * 290.72403 * 10 9 8 12 12 C 1.52993 * 109.47133 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47199 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47295 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99966 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99910 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00036 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00067 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47293 * 59.99835 * 18 16 14 20 20 H 1.48503 * 109.47198 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47202 * 299.99961 * 18 16 14 22 22 C 1.47846 * 108.41728 * 358.99552 * 9 8 7 23 23 H 1.09003 * 109.46652 * 300.00132 * 1 2 3 24 24 H 1.08994 * 109.47088 * 59.99729 * 1 2 3 25 25 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47563 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47126 * 300.00563 * 3 2 1 28 28 H 1.09005 * 109.47344 * 59.99698 * 3 2 1 29 29 H 0.96698 * 113.99940 * 300.00726 * 4 2 1 30 30 H 1.08996 * 110.70802 * 272.13982 * 7 5 2 31 31 H 1.08997 * 110.70353 * 35.20228 * 7 5 2 32 32 H 1.08999 * 109.89395 * 97.11657 * 8 7 5 33 33 H 1.08999 * 109.88953 * 218.14868 * 8 7 5 34 34 H 1.08995 * 109.47491 * 50.72077 * 10 9 8 35 35 H 1.09002 * 109.47013 * 170.72554 * 10 9 8 36 36 H 1.09003 * 109.46748 * 300.00497 * 11 10 9 37 37 H 1.08992 * 109.47020 * 60.00001 * 11 10 9 38 38 H 1.09003 * 109.47435 * 299.99741 * 12 11 10 39 39 H 1.09002 * 109.47291 * 59.99986 * 12 11 10 40 40 H 1.09003 * 109.47012 * 300.00364 * 13 12 11 41 41 H 1.09002 * 109.46713 * 59.99996 * 13 12 11 42 42 H 0.97009 * 120.00289 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.37456 * 265.23586 * 22 9 8 44 44 H 1.08999 * 110.37254 * 143.00857 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.6347 -0.2664 2.1531 7 6 1.7076 -2.2356 1.1922 8 6 2.8056 -2.8660 2.0745 9 7 3.9339 -1.9134 2.1179 10 6 5.1761 -2.5435 1.6511 11 6 5.6342 -3.5864 2.6726 12 6 6.9283 -4.2421 2.1867 13 6 7.3867 -5.2846 3.2086 14 6 8.6610 -5.9310 2.7297 15 1 9.1003 -5.6282 1.7907 16 6 9.2661 -6.9088 3.4903 17 7 8.7309 -7.2779 4.6335 18 14 10.8461 -7.7095 2.8971 19 1 11.8983 -6.6732 2.7421 20 1 11.2902 -8.7222 3.8882 21 1 10.6054 -8.3701 1.5891 22 6 3.5885 -0.7419 1.2848 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.7209 -1.5953 -1.2328 30 1 0.7195 -2.4294 1.6096 31 1 1.7718 -2.6060 0.1691 32 1 2.4225 -3.0321 3.0814 33 1 3.1321 -3.8114 1.6414 34 1 4.9991 -3.0285 0.6912 35 1 5.9486 -1.7829 1.5370 36 1 5.8112 -3.1014 3.6326 37 1 4.8618 -4.3468 2.7868 38 1 6.7517 -4.7271 1.2267 39 1 7.7006 -3.4814 2.0729 40 1 7.5634 -4.7993 4.1685 41 1 6.6145 -6.0454 3.3228 42 1 9.1568 -7.9656 5.1689 43 1 3.9897 -0.8605 0.2783 44 1 3.9698 0.1725 1.7392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721875015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:28 Heat of formation + Delta-G solvation = -99.612014 kcal Electronic energy + Delta-G solvation = -19269.449821 eV Core-core repulsion = 16412.485875 eV Total energy + Delta-G solvation = -2856.963946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89007 -38.37672 -36.42780 -34.64220 -33.49932 -31.99532 -30.13373 -29.02697 -28.03956 -26.28837 -23.63746 -23.10373 -21.84150 -21.33363 -20.55930 -18.42667 -17.96359 -17.25292 -16.58068 -16.33702 -16.18146 -15.53982 -14.94313 -14.85331 -14.37782 -14.32468 -14.25869 -13.65967 -13.51044 -13.31736 -13.09552 -12.99492 -12.83655 -12.77391 -12.56342 -12.48193 -12.23203 -12.19498 -12.11098 -11.93109 -11.60664 -11.40010 -11.34040 -11.28427 -11.03463 -10.74114 -10.55753 -9.25866 -8.20390 -6.32311 1.38864 1.42575 1.50572 2.40490 2.97711 3.12028 3.30673 3.53027 3.68116 3.83777 4.05883 4.10198 4.17767 4.23855 4.37710 4.43240 4.53685 4.55061 4.61940 4.72686 4.76862 4.83338 4.85802 4.89334 4.91147 4.95383 5.02063 5.06112 5.13256 5.22158 5.25080 5.26025 5.33580 5.37025 5.39826 5.53591 5.75989 5.85485 6.06576 6.13526 6.25094 6.80848 6.84852 7.37004 8.91419 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.052324 B = 0.003040 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.000442 B = 9208.175850 C = 9359.203005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.136 3.864 3 C -0.142 4.142 4 O -0.576 6.576 5 C -0.113 4.113 6 H 0.096 0.904 7 C -0.132 4.132 8 C 0.036 3.964 9 N -0.543 5.543 10 C 0.064 3.936 11 C -0.100 4.100 12 C -0.097 4.097 13 C 0.025 3.975 14 C -0.547 4.547 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.049 3.951 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.381 0.619 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.050 0.950 40 H -0.012 1.012 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.046 0.954 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 15.719 -9.636 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.095 3.905 3 C -0.200 4.200 4 O -0.385 6.385 5 C -0.132 4.132 6 H 0.114 0.886 7 C -0.170 4.170 8 C -0.092 4.092 9 N -0.268 5.268 10 C -0.064 4.064 11 C -0.138 4.138 12 C -0.135 4.135 13 C -0.012 4.012 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.078 4.078 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.232 0.768 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.225 16.340 -9.087 26.110 hybrid contribution 0.634 -1.567 -0.497 1.762 sum -17.591 14.773 -9.584 24.890 Atomic orbital electron populations 1.22439 0.94214 1.03174 1.03221 1.21151 0.93444 0.92562 0.83351 1.21815 1.01598 0.93457 1.03085 1.86555 1.77826 1.29764 1.44351 1.22955 0.94659 0.96058 0.99563 0.88566 1.22819 0.99513 0.94511 1.00165 1.22912 0.91025 0.94809 1.00420 1.63653 1.02904 1.07760 1.52437 1.22156 0.92172 0.96423 0.95668 1.21455 0.96585 0.97037 0.98721 1.21410 0.96123 0.97493 0.98485 1.18997 0.94700 0.93409 0.94105 1.21719 1.09680 1.20812 1.06295 0.92200 1.26031 1.01511 0.97476 0.94994 1.70103 1.41685 1.31613 1.14088 0.85474 0.78982 0.78201 0.78240 1.19109 1.20681 1.19081 1.23019 0.95698 0.93583 0.95483 0.90529 0.91878 0.91535 0.92748 0.91941 0.89636 0.76845 0.88881 0.90766 0.90868 0.93305 0.94785 0.91068 0.92859 0.93084 0.93229 0.93111 0.99311 0.99283 0.92722 0.93602 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 8.68 71.98 0.62 -1.20 16 2 C 0.14 1.93 0.87 -10.79 -0.01 1.92 16 3 C -0.14 -1.99 8.62 71.98 0.62 -1.37 16 4 O -0.58 -10.11 12.13 -148.98 -1.81 -11.91 16 5 C -0.11 -1.80 2.42 -9.41 -0.02 -1.83 16 6 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 7 C -0.13 -2.07 5.56 31.78 0.18 -1.89 16 8 C 0.04 0.82 6.21 86.59 0.54 1.36 16 9 N -0.54 -14.26 5.17 -884.78 -4.58 -18.84 16 10 C 0.06 1.91 4.54 86.31 0.39 2.30 16 11 C -0.10 -3.63 5.24 30.59 0.16 -3.47 16 12 C -0.10 -4.19 5.15 30.59 0.16 -4.03 16 13 C 0.03 1.38 4.97 29.85 0.15 1.53 16 14 C -0.55 -32.36 9.11 25.60 0.23 -32.13 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.93 -58.54 13.29 21.45 0.28 -58.26 16 18 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 C 0.05 1.07 5.00 86.77 0.43 1.50 16 23 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.61 7.56 -2.39 -0.02 0.59 16 26 H 0.05 0.88 7.22 -2.39 -0.02 0.86 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.38 4.86 6.85 -74.06 -0.51 4.35 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.04 5.94 -2.39 -0.01 1.02 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.22 6.91 -2.39 -0.02 1.20 16 34 H 0.03 0.99 7.99 -2.39 -0.02 0.98 16 35 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.87 7.11 -2.39 -0.02 1.85 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 43 H 0.05 1.08 7.07 -2.39 -0.02 1.07 16 44 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 Total: -1.00 -67.78 339.79 0.27 -67.51 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.43 Total: 11.23 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.91 Total: -36.99 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -4.29 Total: -77.09 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.81 Total: -11.91 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -67.78 0.27 -67.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721875015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.102 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds