Wall clock time and date at job start Mon Mar 30 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.52996 * 109.47057 * 240.00355 * 2 1 3 5 5 C 1.52996 * 109.47277 * 119.99957 * 2 1 3 6 6 N 1.46903 * 109.47126 * 87.20082 * 5 2 1 7 7 C 1.46897 * 110.99982 * 78.13792 * 6 5 2 8 8 C 1.50692 * 109.47176 * 49.14766 * 7 6 5 9 9 H 1.08006 * 120.00435 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99863 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00233 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99742 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47132 * 60.00913 * 12 10 8 14 14 H 1.48503 * 109.46836 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47524 * 300.00490 * 12 10 8 16 16 C 1.46896 * 110.99701 * 314.18048 * 6 5 2 17 17 C 1.53002 * 109.47630 * 273.53509 * 16 6 5 18 18 H 1.08994 * 109.46913 * 307.11629 * 17 16 6 19 19 O 1.42902 * 109.46743 * 67.11749 * 17 16 6 20 20 C 1.53002 * 109.47231 * 187.11608 * 17 16 6 21 21 C 1.52996 * 117.49683 * 248.74808 * 20 17 16 22 22 C 1.53001 * 117.49711 * 180.08898 * 20 17 16 23 23 H 1.09000 * 109.46935 * 253.59407 * 1 2 3 24 24 H 1.08994 * 109.47034 * 13.59589 * 1 2 3 25 25 H 1.09003 * 109.46734 * 133.59420 * 1 2 3 26 26 H 1.08993 * 109.47363 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47087 * 300.00253 * 3 2 1 28 28 H 1.08996 * 109.47140 * 60.00015 * 3 2 1 29 29 H 1.08996 * 109.47208 * 302.31071 * 4 2 1 30 30 H 1.08999 * 109.47835 * 62.31100 * 4 2 1 31 31 H 1.09004 * 109.47010 * 182.31443 * 4 2 1 32 32 H 1.08994 * 109.46961 * 327.19588 * 5 2 1 33 33 H 1.09003 * 109.46994 * 207.19862 * 5 2 1 34 34 H 1.09008 * 109.46463 * 169.14675 * 7 6 5 35 35 H 1.08997 * 109.47232 * 289.14394 * 7 6 5 36 36 H 0.96993 * 120.00205 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.46938 * 153.53484 * 16 6 5 38 38 H 1.09005 * 109.46947 * 33.53621 * 16 6 5 39 39 H 0.96697 * 114.00278 * 79.14244 * 19 17 16 40 40 H 1.08998 * 115.54916 * 34.41446 * 20 17 16 41 41 H 1.09004 * 117.50254 * 359.97438 * 21 20 17 42 42 H 1.08995 * 117.50175 * 145.02296 * 21 20 17 43 43 H 1.08995 * 117.49531 * 214.97871 * 22 20 17 44 44 H 1.08998 * 117.49532 * 359.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 7 2.1395 -2.1614 0.9769 7 6 3.3461 -2.4675 0.1969 8 6 4.5390 -1.8046 0.8359 9 1 4.4135 -1.2151 1.7322 10 6 5.7909 -1.9514 0.2770 11 7 5.9438 -2.6696 -0.8140 12 14 7.2695 -1.1291 1.0688 13 1 7.4340 -1.6353 2.4552 14 1 8.4892 -1.4387 0.2804 15 1 7.0607 0.3409 1.1001 16 6 0.9340 -2.6529 0.2965 17 6 -0.1237 -3.0246 1.3378 18 1 0.3091 -3.7097 2.0666 19 8 -0.5729 -1.8425 2.0033 20 6 -1.3079 -3.7001 0.6433 21 6 -2.6317 -2.9343 0.5995 22 6 -2.4792 -4.1480 1.5198 23 1 -0.3633 -0.2903 0.9858 24 1 -0.3633 0.9988 -0.2416 25 1 -0.3633 -0.7087 -0.7443 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6433 -1.7361 -1.2703 30 1 1.7110 -0.1840 -2.1388 31 1 3.1293 -0.7572 -1.2287 32 1 1.3468 -0.5543 2.0735 33 1 3.0230 -0.3333 1.5168 34 1 3.4993 -3.5465 0.1733 35 1 3.2252 -2.0954 -0.8204 36 1 6.8244 -2.7726 -1.2073 37 1 1.1846 -3.5323 -0.2966 38 1 0.5422 -1.8734 -0.3570 39 1 -1.2151 -1.3262 1.4974 40 1 -1.0567 -4.3207 -0.2168 41 1 -2.6592 -1.9495 1.0658 42 1 -3.2518 -3.0515 -0.2892 43 1 -2.9989 -5.0631 1.2361 44 1 -2.4059 -3.9617 2.5913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838853575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:47 Heat of formation + Delta-G solvation = 14.371755 kcal Electronic energy + Delta-G solvation = -21154.791299 eV Core-core repulsion = 18302.770060 eV Total energy + Delta-G solvation = -2852.021239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42231 -39.14086 -35.79987 -35.50301 -34.24484 -30.90461 -29.23720 -28.40615 -27.78903 -26.43397 -24.23441 -23.29529 -21.69728 -21.29369 -19.87058 -18.39312 -18.01968 -17.23128 -16.82629 -16.14103 -15.91883 -15.72933 -15.33952 -14.82866 -14.64126 -14.20793 -13.98943 -13.68599 -13.11430 -13.01603 -12.82988 -12.72060 -12.47481 -12.39880 -12.32117 -12.22587 -12.05730 -11.96203 -11.88659 -11.49218 -11.44705 -11.25060 -11.15072 -11.06858 -10.88299 -10.55802 -10.27895 -8.44797 -8.15279 -6.20710 1.39101 1.41313 1.48722 2.41765 2.87266 3.17915 3.33087 3.56049 3.93619 3.99614 4.04525 4.08632 4.11056 4.19676 4.43383 4.43896 4.56932 4.65448 4.78683 4.80200 4.81060 4.87926 4.93990 5.00273 5.02010 5.06264 5.16240 5.24030 5.27347 5.28676 5.31699 5.38275 5.42881 5.49811 5.60487 5.65217 5.70663 5.74090 6.15419 6.54012 6.82926 6.93348 6.99415 7.46554 8.95628 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.006423 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.822228 B = 4358.062237 C = 4850.812859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.162 4.162 5 C 0.072 3.928 6 N -0.539 5.539 7 C 0.170 3.830 8 C -0.516 4.516 9 H 0.059 0.941 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.955 3.045 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.004 4.004 17 C 0.154 3.846 18 H 0.075 0.925 19 O -0.562 6.562 20 C -0.201 4.201 21 C -0.170 4.170 22 C -0.169 4.169 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.054 0.946 34 H -0.020 1.020 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.376 0.624 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.247 3.652 0.559 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.092 4.092 3 C -0.188 4.188 4 C -0.219 4.219 5 C -0.056 4.056 6 N -0.262 5.262 7 C 0.044 3.956 8 C -0.554 4.554 9 H 0.077 0.923 10 C -0.192 4.192 11 N -0.573 5.573 12 Si 0.781 3.219 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.132 4.132 17 C 0.094 3.906 18 H 0.093 0.907 19 O -0.375 6.375 20 C -0.220 4.220 21 C -0.206 4.206 22 C -0.206 4.206 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.072 0.928 34 H -0.002 1.002 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.231 0.769 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.674 3.131 1.341 17.019 hybrid contribution 1.168 0.393 -1.031 1.606 sum -15.507 3.524 0.310 15.905 Atomic orbital electron populations 1.22693 0.93362 1.02128 1.03400 1.21053 0.96814 0.95919 0.95452 1.21826 0.99885 0.95144 1.01966 1.22832 1.01184 1.00502 0.97369 1.22417 1.00422 0.86795 0.96012 1.62040 1.01852 1.15248 1.47029 1.20288 0.87304 0.93650 0.94336 1.21526 0.92894 1.30448 1.10564 0.92331 1.25743 1.01640 0.96205 0.95601 1.70064 1.23909 1.41555 1.21774 0.85647 0.78631 0.79174 0.78443 1.19898 1.20956 1.19370 1.23524 0.92268 1.00705 0.96687 1.21230 0.90692 0.85551 0.93081 0.90709 1.86722 1.64235 1.37618 1.48945 1.23049 0.90181 1.05679 1.03105 1.23100 0.97962 0.96865 1.02690 1.22984 1.00662 0.99318 0.97611 0.89578 0.91565 0.92131 0.94986 0.91921 0.91611 0.91477 0.93107 0.93526 0.90790 0.92788 1.00230 0.95347 0.93018 0.93420 0.88586 0.76867 0.87177 0.87787 0.86973 0.87620 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 7.64 71.98 0.55 -3.36 16 2 C -0.09 -2.99 0.77 -52.18 -0.04 -3.03 16 3 C -0.13 -3.99 8.04 71.98 0.58 -3.41 16 4 C -0.16 -6.12 6.15 71.98 0.44 -5.68 16 5 C 0.07 2.85 4.65 86.30 0.40 3.25 16 6 N -0.54 -23.55 4.71 -900.81 -4.24 -27.79 16 7 C 0.17 9.02 4.01 85.56 0.34 9.37 16 8 C -0.52 -29.47 8.07 25.60 0.21 -29.27 16 9 H 0.06 3.34 6.05 -2.91 -0.02 3.32 16 10 C 0.01 0.34 5.46 84.66 0.46 0.80 16 11 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 12 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 C 0.00 -0.15 3.02 86.30 0.26 0.11 16 17 C 0.15 4.51 3.62 30.60 0.11 4.62 16 18 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 19 O -0.56 -15.48 9.75 -148.98 -1.45 -16.93 16 20 C -0.20 -4.45 5.70 -10.79 -0.06 -4.52 16 21 C -0.17 -2.78 9.69 30.62 0.30 -2.49 16 22 C -0.17 -3.12 10.19 30.62 0.31 -2.81 16 23 H 0.09 2.02 3.04 -2.39 -0.01 2.02 16 24 H 0.07 1.36 7.65 -2.39 -0.02 1.34 16 25 H 0.06 1.40 6.18 -2.39 -0.01 1.39 16 26 H 0.03 1.13 8.11 -2.39 -0.02 1.11 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 2.56 3.67 -2.39 -0.01 2.55 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 2.20 5.84 -2.38 -0.01 2.19 16 32 H 0.07 2.77 6.19 -2.39 -0.01 2.76 16 33 H 0.05 2.49 5.04 -2.39 -0.01 2.47 16 34 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 35 H 0.03 1.57 3.54 -2.39 -0.01 1.56 16 36 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.05 1.78 7.76 -2.39 -0.02 1.77 16 38 H 0.10 3.02 1.77 -2.38 0.00 3.01 16 39 H 0.38 7.89 3.82 -74.06 -0.28 7.60 16 40 H 0.11 2.43 8.10 -2.39 -0.02 2.41 16 41 H 0.10 1.53 5.95 -2.39 -0.01 1.52 16 42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.72 311.75 1.20 -63.52 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.72 Total: 26.47 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 3.86 Total: -36.40 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -3.95 Total: -83.97 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -1.45 Total: -16.93 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -64.72 1.20 -63.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838853575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.890 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds